RNA–Protein interactions for RNA: ENST00000407019.6

NUP50-203, Transcript of nucleoporin 50, humanhuman

TSL 1 (best) BASIC

Gene NUP50, Length 2,059 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-203ENST00000407019 HIRIP3Q9BW71 556 aaPredicted RBP23.9■■□□□ 1.42
NUP50-203ENST00000407019 PLB1Q6P1J6 1458 aa23.9■■□□□ 1.42
NUP50-203ENST00000407019 PRG4Q92954 1404 aaPredicted RBP23.88■■□□□ 1.41
NUP50-203ENST00000407019 MPHOSPH9Q99550 1183 aa23.87■■□□□ 1.41
NUP50-203ENST00000407019 ITSN2Q9NZM3 1697 aa23.86■■□□□ 1.41
NUP50-203ENST00000407019 ADCY10Q96PN6 1610 aa23.86■■□□□ 1.41
NUP50-203ENST00000407019 JPH4Q96JJ6 628 aa23.85■■□□□ 1.41
NUP50-203ENST00000407019 ZNF644Q9H582 1327 aaPredicted RBP23.85■■□□□ 1.41
NUP50-203ENST00000407019 KCNH8Q96L42 1107 aa23.83■■□□□ 1.41
NUP50-203ENST00000407019 CAMSAP2Q08AD1 1489 aa23.82■■□□□ 1.4
NUP50-203ENST00000407019 KIF14Q15058 1648 aa23.8■■□□□ 1.4
NUP50-203ENST00000407019 GPATCH8Q9UKJ3 1502 aaKnown RBP23.79■■□□□ 1.4
NUP50-203ENST00000407019 CFDP1Q9UEE9 299 aaPredicted RBP23.78■■□□□ 1.4
NUP50-203ENST00000407019 ANP32CO43423 234 aa23.77■■□□□ 1.4
NUP50-203ENST00000407019 ABCA8O94911 1581 aa23.77■■□□□ 1.4
NUP50-203ENST00000407019 ADGBQ8N7X0 1667 aa23.76■■□□□ 1.39
NUP50-203ENST00000407019 CCER2I3L3R5 266 aa23.75■■□□□ 1.39
NUP50-203ENST00000407019 ANKRD30BQ9BXX2 1392 aa23.73■■□□□ 1.39
NUP50-203ENST00000407019 CROCC2H7BZ55 1655 aa23.72■■□□□ 1.39
NUP50-203ENST00000407019 FOXD1Q16676 465 aa23.72■■□□□ 1.39
NUP50-203ENST00000407019 ADGRL2O95490 1459 aa23.72■■□□□ 1.39
NUP50-203ENST00000407019 RPRD2Q5VT52 1461 aaKnown RBP23.72■■□□□ 1.39
NUP50-203ENST00000407019 NCOA1Q15788 1441 aa23.7■■□□□ 1.38
NUP50-203ENST00000407019 L3MBTL2Q969R5 705 aa23.69■■□□□ 1.38
NUP50-203ENST00000407019 SLC4A1APQ9BWU0 796 aaKnown RBP23.68■■□□□ 1.38
NUP50-203ENST00000407019 ATP10BO94823 1461 aa23.68■■□□□ 1.38
NUP50-203ENST00000407019 PLEKHD1A6NEE1 506 aa23.68■■□□□ 1.38
NUP50-203ENST00000407019 HSPA5P11021 654 aaKnown RBP23.68■■□□□ 1.38
NUP50-203ENST00000407019 ZNF777Q9ULD5 760 aaPredicted RBP23.67■■□□□ 1.38
NUP50-203ENST00000407019 ABCC10Q5T3U5 1492 aa23.66■■□□□ 1.38
NUP50-203ENST00000407019 PZPP20742 1482 aa23.65■■□□□ 1.38
NUP50-203ENST00000407019 TEX14Q8IWB6 1497 aa23.65■■□□□ 1.38
NUP50-203ENST00000407019 EIF4G2P78344 907 aaKnown RBP eCLIP23.64■■□□□ 1.38
NUP50-203ENST00000407019 SUPT16HQ9Y5B9 1047 aaKnown RBP23.64■■□□□ 1.38
NUP50-203ENST00000407019 CDC42BPAQ5VT25 1732 aa23.64■■□□□ 1.38
NUP50-203ENST00000407019 ANKRD30AQ9BXX3 1397 aa23.63■■□□□ 1.37
NUP50-203ENST00000407019 SHANK2Q9UPX8 1470 aa23.6■■□□□ 1.37
NUP50-203ENST00000407019 WASHC2AQ641Q2 1341 aa23.59■■□□□ 1.37
NUP50-203ENST00000407019 PTPRGP23470 1445 aa23.58■■□□□ 1.37
NUP50-203ENST00000407019 KIAA1107Q9UPP5 1409 aa23.56■■□□□ 1.36
NUP50-203ENST00000407019 ANKRD50Q9ULJ7 1429 aa23.55■■□□□ 1.36
NUP50-203ENST00000407019 C9orf84Q5VXU9 1444 aa23.54■■□□□ 1.36
NUP50-203ENST00000407019 NBPF8Q3BBV2 869 aa23.54■■□□□ 1.36
NUP50-203ENST00000407019 CHD1O14646 1710 aa23.53■■□□□ 1.36
NUP50-203ENST00000407019 CNTLNQ9NXG0 1405 aa23.51■■□□□ 1.35
NUP50-203ENST00000407019 ARHGEF5Q12774 1597 aa23.5■■□□□ 1.35
NUP50-203ENST00000407019 CCDC7Q96M83 1385 aa23.48■■□□□ 1.35
NUP50-203ENST00000407019 MBD5Q9P267 1494 aa23.48■■□□□ 1.35
NUP50-203ENST00000407019 PKD2Q13563 968 aa23.47■■□□□ 1.35
NUP50-203ENST00000407019 SHROOM2Q13796 1616 aa23.47■■□□□ 1.35
NUP50-203ENST00000407019 TSPY4P0CV99 314 aa23.47■■□□□ 1.35
NUP50-203ENST00000407019 TSPY10P0CW01 314 aa23.47■■□□□ 1.35
NUP50-203ENST00000407019 SPATA31E1Q6ZUB1 1445 aa23.45■■□□□ 1.35
NUP50-203ENST00000407019 KDM5DQ9BY66 1539 aa23.45■■□□□ 1.34
NUP50-203ENST00000407019 PREX2Q70Z35 1606 aa23.45■■□□□ 1.34
NUP50-203ENST00000407019 SAMD9LQ8IVG5 1584 aa23.42■■□□□ 1.34
NUP50-203ENST00000407019 NUP155O75694 1391 aa23.42■■□□□ 1.34
NUP50-203ENST00000407019 KIF15Q9NS87 1388 aa23.42■■□□□ 1.34
NUP50-203ENST00000407019 C11orf95C9JLR9 678 aaPredicted RBP23.42■■□□□ 1.34
NUP50-203ENST00000407019 CCDC141Q6ZP82 1450 aa23.41■■□□□ 1.34
NUP50-203ENST00000407019 POLR1AO95602 1720 aaPredicted RBP23.41■■□□□ 1.34
NUP50-203ENST00000407019 CDC42BPBQ9Y5S2 1711 aa23.41■■□□□ 1.34
NUP50-203ENST00000407019 HNRNPMP52272 730 aaKnown RBP eCLIP23.4■■□□□ 1.34
NUP50-203ENST00000407019 RSPH4AQ5TD94 716 aa23.36■■□□□ 1.33
NUP50-203ENST00000407019 KIF7Q2M1P5 1343 aa23.36■■□□□ 1.33
NUP50-203ENST00000407019 ABCC2Q92887 1545 aa23.35■■□□□ 1.33
NUP50-203ENST00000407019 TTC37Q6PGP7 1564 aa23.33■■□□□ 1.33
NUP50-203ENST00000407019 ARHGEF12Q9NZN5 1544 aa23.33■■□□□ 1.33
NUP50-203ENST00000407019 FKBP8Q14318 412 aa23.32■■□□□ 1.32
NUP50-203ENST00000407019 UHRF1BP1Q6BDS2 1440 aa23.32■■□□□ 1.32
NUP50-203ENST00000407019 ARHGAP5Q13017 1502 aa23.32■■□□□ 1.32
NUP50-203ENST00000407019 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.32■■□□□ 1.32
NUP50-203ENST00000407019 ERCC6L2Q5T890 1561 aa23.31■■□□□ 1.32
NUP50-203ENST00000407019 NEFLP07196 543 aa23.31■■□□□ 1.32
NUP50-203ENST00000407019 SYCP2Q9BX26 1530 aa23.31■■□□□ 1.32
NUP50-203ENST00000407019 MAST1Q9Y2H9 1570 aa23.3■■□□□ 1.32
NUP50-203ENST00000407019 USP47Q96K76 1375 aa23.3■■□□□ 1.32
NUP50-203ENST00000407019 PRKRIP1Q9H875 184 aaPredicted RBP23.3■■□□□ 1.32
NUP50-203ENST00000407019 HNRNPUQ00839 825 aaKnown RBP eCLIP23.29■■□□□ 1.32
NUP50-203ENST00000407019 ZNF326Q5BKZ1 582 aaKnown RBP23.29■■□□□ 1.32
NUP50-203ENST00000407019 RALGAPBQ86X10 1494 aa23.29■■□□□ 1.32
NUP50-203ENST00000407019 KDM5CP41229 1560 aa23.28■■□□□ 1.32
NUP50-203ENST00000407019 FAM135AQ9P2D6 1515 aa23.27■■□□□ 1.32
NUP50-203ENST00000407019 MYO5CQ9NQX4 1742 aa23.26■■□□□ 1.31
NUP50-203ENST00000407019 PLEKHH2Q8IVE3 1493 aa23.25■■□□□ 1.31
NUP50-203ENST00000407019 BCANQ96GW7 911 aa23.24■■□□□ 1.31
NUP50-203ENST00000407019 BCORL1Q5H9F3 1711 aa23.24■■□□□ 1.31
NUP50-203ENST00000407019 UNC13BO14795 1591 aa23.22■■□□□ 1.31
NUP50-203ENST00000407019 CLASP1Q7Z460 1538 aa23.22■■□□□ 1.31
NUP50-203ENST00000407019 CCDC184Q52MB2 194 aa23.22■■□□□ 1.31
NUP50-203ENST00000407019 PLXNC1O60486 1568 aa23.21■■□□□ 1.31
NUP50-203ENST00000407019 ARID4BQ4LE39 1312 aaPredicted RBP23.21■■□□□ 1.31
NUP50-203ENST00000407019 MRS2Q9HD23 443 aa23.19■■□□□ 1.3
NUP50-203ENST00000407019 UHRF1BP1LA0JNW5 1464 aa23.18■■□□□ 1.3
NUP50-203ENST00000407019 ZCCHC11Q5TAX3 1644 aaKnown RBP23.18■■□□□ 1.3
NUP50-203ENST00000407019 CARD11Q9BXL7 1154 aa23.17■■□□□ 1.3
NUP50-203ENST00000407019 DHX29Q7Z478 1369 aaKnown RBP23.16■■□□□ 1.3
NUP50-203ENST00000407019 DCAF11Q8TEB1 546 aa23.14■■□□□ 1.29
NUP50-203ENST00000407019 CCDC144AA2RUR9 1427 aa23.14■■□□□ 1.29
NUP50-203ENST00000407019 PLCH2O75038 1416 aa23.14■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms