RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 CCER2I3L3R5 266 aa14.02□□□□□ -0.16
MSH2-202ENST00000406134 CHIC2Q9UKJ5 165 aa14.02□□□□□ -0.16
MSH2-202ENST00000406134 RPRD2Q5VT52 1461 aaKnown RBP14.02□□□□□ -0.17
MSH2-202ENST00000406134 PZPP20742 1482 aa14.02□□□□□ -0.17
MSH2-202ENST00000406134 MAGI1Q96QZ7 1491 aaPredicted RBP14.01□□□□□ -0.17
MSH2-202ENST00000406134 CAMSAP2Q08AD1 1489 aa14.01□□□□□ -0.17
MSH2-202ENST00000406134 ANKRD30BQ9BXX2 1392 aa14□□□□□ -0.17
MSH2-202ENST00000406134 PLB1Q6P1J6 1458 aa14□□□□□ -0.17
MSH2-202ENST00000406134 WASHC2AQ641Q2 1341 aa14□□□□□ -0.17
MSH2-202ENST00000406134 ZNF644Q9H582 1327 aaPredicted RBP14□□□□□ -0.17
MSH2-202ENST00000406134 MBD5Q9P267 1494 aa14□□□□□ -0.17
MSH2-202ENST00000406134 PRG4Q92954 1404 aaPredicted RBP13.99□□□□□ -0.17
MSH2-202ENST00000406134 ABCA8O94911 1581 aa13.98□□□□□ -0.17
MSH2-202ENST00000406134 SPATA31E1Q6ZUB1 1445 aa13.98□□□□□ -0.17
MSH2-202ENST00000406134 ARID3CA6NKF2 412 aa13.98□□□□□ -0.17
MSH2-202ENST00000406134 MPHOSPH9Q99550 1183 aa13.98□□□□□ -0.17
MSH2-202ENST00000406134 GPATCH8Q9UKJ3 1502 aaKnown RBP13.98□□□□□ -0.17
MSH2-202ENST00000406134 SYNJ2O15056 1496 aa13.98□□□□□ -0.17
MSH2-202ENST00000406134 ADGRL2O95490 1459 aa13.98□□□□□ -0.17
MSH2-202ENST00000406134 NUP160Q12769 1436 aa13.98□□□□□ -0.17
MSH2-202ENST00000406134 BCORL1Q5H9F3 1711 aa13.97□□□□□ -0.17
MSH2-202ENST00000406134 FOXD1Q16676 465 aa13.97□□□□□ -0.17
MSH2-202ENST00000406134 TROQ12816 1431 aaPredicted RBP13.96□□□□□ -0.17
MSH2-202ENST00000406134 NCOA1Q15788 1441 aa13.96□□□□□ -0.17
MSH2-202ENST00000406134 C11orf95C9JLR9 678 aaPredicted RBP13.95□□□□□ -0.18
MSH2-202ENST00000406134 TSHZ2Q9NRE2 1034 aa13.95□□□□□ -0.18
MSH2-202ENST00000406134 HSPA5P11021 654 aaKnown RBP13.94□□□□□ -0.18
MSH2-202ENST00000406134 ABCC10Q5T3U5 1492 aa13.94□□□□□ -0.18
MSH2-202ENST00000406134 NBPF8Q3BBV2 869 aa13.93□□□□□ -0.18
MSH2-202ENST00000406134 L3MBTL2Q969R5 705 aa13.92□□□□□ -0.18
MSH2-202ENST00000406134 CNTLNQ9NXG0 1405 aa13.92□□□□□ -0.18
MSH2-202ENST00000406134 CDC42BPBQ9Y5S2 1711 aa13.91□□□□□ -0.18
MSH2-202ENST00000406134 ANP32CO43423 234 aa13.91□□□□□ -0.18
MSH2-202ENST00000406134 KDM5CP41229 1560 aa13.9□□□□□ -0.18
MSH2-202ENST00000406134 TRIM52Q96A61 297 aa13.9□□□□□ -0.18
MSH2-202ENST00000406134 KDM5DQ9BY66 1539 aa13.88□□□□□ -0.19
MSH2-202ENST00000406134 CCDC184Q52MB2 194 aa13.88□□□□□ -0.19
MSH2-202ENST00000406134 CCDC7Q96M83 1385 aa13.87□□□□□ -0.19
MSH2-202ENST00000406134 ATP10BO94823 1461 aa13.86□□□□□ -0.19
MSH2-202ENST00000406134 SHANK2Q9UPX8 1470 aa13.86□□□□□ -0.19
MSH2-202ENST00000406134 PREX2Q70Z35 1606 aa13.85□□□□□ -0.19
MSH2-202ENST00000406134 FKBP8Q14318 412 aa13.85□□□□□ -0.19
MSH2-202ENST00000406134 E9PCH4 1651 aa13.85□□□□□ -0.19
MSH2-202ENST00000406134 SAMD9LQ8IVG5 1584 aa13.84□□□□□ -0.19
MSH2-202ENST00000406134 CHD1O14646 1710 aa13.84□□□□□ -0.19
MSH2-202ENST00000406134 ERCC6Q03468 1493 aa13.84□□□□□ -0.19
MSH2-202ENST00000406134 ARHGEF5Q12774 1597 aa13.84□□□□□ -0.19
MSH2-202ENST00000406134 KIAA1107Q9UPP5 1409 aa13.83□□□□□ -0.2
MSH2-202ENST00000406134 SHROOM2Q13796 1616 aa13.82□□□□□ -0.2
MSH2-202ENST00000406134 BCANQ96GW7 911 aa13.82□□□□□ -0.2
MSH2-202ENST00000406134 EIF4G2P78344 907 aaKnown RBP eCLIP13.82□□□□□ -0.2
MSH2-202ENST00000406134 PTPRGP23470 1445 aa13.8□□□□□ -0.2
MSH2-202ENST00000406134 DHX29Q7Z478 1369 aaKnown RBP13.8□□□□□ -0.2
MSH2-202ENST00000406134 KIF7Q2M1P5 1343 aa13.8□□□□□ -0.2
MSH2-202ENST00000406134 UHRF1BP1Q6BDS2 1440 aa13.79□□□□□ -0.2
MSH2-202ENST00000406134 TTC37Q6PGP7 1564 aa13.78□□□□□ -0.2
MSH2-202ENST00000406134 MYO5CQ9NQX4 1742 aa13.78□□□□□ -0.2
MSH2-202ENST00000406134 JPH4Q96JJ6 628 aa13.77□□□□□ -0.2
MSH2-202ENST00000406134 C9orf84Q5VXU9 1444 aa13.77□□□□□ -0.2
MSH2-202ENST00000406134 CARMIL2Q6F5E8 1435 aa13.77□□□□□ -0.2
MSH2-202ENST00000406134 SLC4A1APQ9BWU0 796 aaKnown RBP13.77□□□□□ -0.21
MSH2-202ENST00000406134 PRKRIP1Q9H875 184 aaPredicted RBP13.77□□□□□ -0.21
MSH2-202ENST00000406134 ARHGEF12Q9NZN5 1544 aa13.77□□□□□ -0.21
MSH2-202ENST00000406134 ANKRD50Q9ULJ7 1429 aa13.77□□□□□ -0.21
MSH2-202ENST00000406134 CFDP1Q9UEE9 299 aaPredicted RBP13.76□□□□□ -0.21
MSH2-202ENST00000406134 UNC13BO14795 1591 aa13.76□□□□□ -0.21
MSH2-202ENST00000406134 RALGAPBQ86X10 1494 aa13.76□□□□□ -0.21
MSH2-202ENST00000406134 TRPM1Q7Z4N2 1603 aa13.76□□□□□ -0.21
MSH2-202ENST00000406134 CHMP7Q8WUX9 453 aaPredicted RBP13.76□□□□□ -0.21
MSH2-202ENST00000406134 MAST1Q9Y2H9 1570 aa13.75□□□□□ -0.21
MSH2-202ENST00000406134 CDK11AQ9UQ88 783 aaPredicted RBP13.74□□□□□ -0.21
MSH2-202ENST00000406134 ERCC6L2Q5T890 1561 aa13.74□□□□□ -0.21
MSH2-202ENST00000406134 ANKRD30AQ9BXX3 1397 aa13.73□□□□□ -0.21
MSH2-202ENST00000406134 HNRNPUQ00839 825 aaKnown RBP eCLIP13.72□□□□□ -0.21
MSH2-202ENST00000406134 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.71□□□□□ -0.212e-10■■□□□ 13.9
MSH2-202ENST00000406134 FAM135AQ9P2D6 1515 aa13.71□□□□□ -0.21
MSH2-202ENST00000406134 USP47Q96K76 1375 aa13.7□□□□□ -0.22
MSH2-202ENST00000406134 PLXNC1O60486 1568 aa13.7□□□□□ -0.22
MSH2-202ENST00000406134 SYCP2Q9BX26 1530 aa13.69□□□□□ -0.22
MSH2-202ENST00000406134 IQGAP3Q86VI3 1631 aa13.69□□□□□ -0.22
MSH2-202ENST00000406134 PKD2Q13563 968 aa13.69□□□□□ -0.22
MSH2-202ENST00000406134 CCDC141Q6ZP82 1450 aa13.68□□□□□ -0.22
MSH2-202ENST00000406134 ZNF777Q9ULD5 760 aaPredicted RBP13.68□□□□□ -0.22
MSH2-202ENST00000406134 PLA2R1Q13018 1463 aa13.67□□□□□ -0.22
MSH2-202ENST00000406134 LAMC1P11047 1609 aa13.67□□□□□ -0.22
MSH2-202ENST00000406134 FBLN2P98095 1184 aa13.66□□□□□ -0.22
MSH2-202ENST00000406134 KIF15Q9NS87 1388 aa13.66□□□□□ -0.22
MSH2-202ENST00000406134 MAGI2Q86UL8 1455 aa13.66□□□□□ -0.22
MSH2-202ENST00000406134 ZBED9Q6R2W3 1325 aa13.65□□□□□ -0.22
MSH2-202ENST00000406134 NUP155O75694 1391 aa13.64□□□□□ -0.23
MSH2-202ENST00000406134 RNF17Q9BXT8 1623 aaKnown RBP13.64□□□□□ -0.23
MSH2-202ENST00000406134 ZCCHC11Q5TAX3 1644 aaKnown RBP13.63□□□□□ -0.23
MSH2-202ENST00000406134 IRX6P78412 446 aaPredicted RBP13.63□□□□□ -0.23
MSH2-202ENST00000406134 RBM19Q9Y4C8 960 aaKnown RBP13.63□□□□□ -0.23
MSH2-202ENST00000406134 ABCC2Q92887 1545 aa13.62□□□□□ -0.23
MSH2-202ENST00000406134 HNRNPMP52272 730 aaKnown RBP eCLIP13.62□□□□□ -0.23
MSH2-202ENST00000406134 PRDM15P57071 1507 aaPredicted RBP13.62□□□□□ -0.23
MSH2-202ENST00000406134 PLEKHD1A6NEE1 506 aa13.61□□□□□ -0.23
MSH2-202ENST00000406134 PRAG1Q86YV5 1406 aa13.6□□□□□ -0.23
MSH2-202ENST00000406134 MRS2Q9HD23 443 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms