RNA–Protein interactions for RNA: ENST00000398510.7

CHD9-202, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best) BASIC

Gene CHD9, Length 11,337 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-202ENST00000398510 KIF3AQ9Y496 699 aa3.51□□□□□ -1.85
CHD9-202ENST00000398510 MIA2Q96PC5 1412 aa3.51□□□□□ -1.85
CHD9-202ENST00000398510 KNSTRNQ9Y448 316 aa3.51□□□□□ -1.85
CHD9-202ENST00000398510 BIVM-ERCC5R4GMW8 1640 aa3.51□□□□□ -1.85
CHD9-202ENST00000398510 IQGAP2Q13576 1575 aa3.51□□□□□ -1.85
CHD9-202ENST00000398510 HMGB1P09429 215 aaKnown RBP3.51□□□□□ -1.85
CHD9-202ENST00000398510 HTATSF1O43719 755 aaKnown RBP3.51□□□□□ -1.85
CHD9-202ENST00000398510 STAC3Q96MF2 364 aa3.51□□□□□ -1.85
CHD9-202ENST00000398510 ZNF777Q9ULD5 760 aaPredicted RBP3.51□□□□□ -1.85
CHD9-202ENST00000398510 KCNA4P22459 653 aa3.51□□□□□ -1.85
CHD9-202ENST00000398510 RRBP1Q9P2E9 1410 aaKnown RBP3.51□□□□□ -1.85
CHD9-202ENST00000398510 SYNJ2O15056 1496 aa3.51□□□□□ -1.85
CHD9-202ENST00000398510 SNAPC4Q5SXM2 1469 aa3.5□□□□□ -1.85
CHD9-202ENST00000398510 ERICH6BQ5W0A0 696 aa3.5□□□□□ -1.85
CHD9-202ENST00000398510 ROCK1Q13464 1354 aa3.5□□□□□ -1.85
CHD9-202ENST00000398510 SMG6Q86US8 1419 aaKnown RBP3.5□□□□□ -1.85
CHD9-202ENST00000398510 SHROOM2Q13796 1616 aa3.5□□□□□ -1.85
CHD9-202ENST00000398510 FYCO1Q9BQS8 1478 aa3.5□□□□□ -1.85
CHD9-202ENST00000398510 MAPK8IP3Q9UPT6 1336 aa3.5□□□□□ -1.85
CHD9-202ENST00000398510 EIF2AK4Q9P2K8 1649 aaKnown RBP3.5□□□□□ -1.85
CHD9-202ENST00000398510 TRIM44Q96DX7 344 aaPredicted RBP3.5□□□□□ -1.85
CHD9-202ENST00000398510 CFDP1Q9UEE9 299 aaPredicted RBP3.5□□□□□ -1.85
CHD9-202ENST00000398510 EPRSP07814 1512 aaKnown RBP3.5□□□□□ -1.85
CHD9-202ENST00000398510 BCL11AQ9H165 835 aa3.5□□□□□ -1.85
CHD9-202ENST00000398510 EID1Q9Y6B2 187 aa3.5□□□□□ -1.85
CHD9-202ENST00000398510 PEG3Q9GZU2 1588 aa3.5□□□□□ -1.85
CHD9-202ENST00000398510 TEX14Q8IWB6 1497 aa3.49□□□□□ -1.85
CHD9-202ENST00000398510 HMGB3O15347 200 aaKnown RBP3.49□□□□□ -1.85
CHD9-202ENST00000398510 CUX2O14529 1486 aa3.49□□□□□ -1.85
CHD9-202ENST00000398510 GPATCH3Q96I76 525 aa3.49□□□□□ -1.85
CHD9-202ENST00000398510 MAGI1Q96QZ7 1491 aaPredicted RBP3.49□□□□□ -1.85
CHD9-202ENST00000398510 FHOD3Q2V2M9 1422 aa3.49□□□□□ -1.85
CHD9-202ENST00000398510 RAPGEF2Q9Y4G8 1499 aa3.49□□□□□ -1.85
CHD9-202ENST00000398510 ANKRD30AQ9BXX3 1397 aa3.49□□□□□ -1.85
CHD9-202ENST00000398510 CFAP43Q8NDM7 1665 aa3.49□□□□□ -1.85
CHD9-202ENST00000398510 IFT140Q96RY7 1462 aa3.49□□□□□ -1.85
CHD9-202ENST00000398510 FAM135AQ9P2D6 1515 aa3.49□□□□□ -1.85
CHD9-202ENST00000398510 MCCP23508 829 aa3.49□□□□□ -1.85
CHD9-202ENST00000398510 TIMELESSQ9UNS1 1208 aa3.49□□□□□ -1.85
CHD9-202ENST00000398510 GRIN2BQ13224 1484 aa3.48□□□□□ -1.85
CHD9-202ENST00000398510 NCOA2Q15596 1464 aa3.48□□□□□ -1.85
CHD9-202ENST00000398510 FANCD2Q9BXW9 1451 aa3.48□□□□□ -1.85
CHD9-202ENST00000398510 DIEXFQ68CQ4 756 aaKnown RBP3.48□□□□□ -1.85
CHD9-202ENST00000398510 DDRGK1Q96HY6 314 aa3.48□□□□□ -1.85
CHD9-202ENST00000398510 AMOTL1Q8IY63 956 aa3.48□□□□□ -1.85
CHD9-202ENST00000398510 TMC1Q8TDI8 760 aa3.48□□□□□ -1.85
CHD9-202ENST00000398510 CCDC141Q6ZP82 1450 aa3.48□□□□□ -1.85
CHD9-202ENST00000398510 GAPVD1Q14C86 1478 aa3.48□□□□□ -1.85
CHD9-202ENST00000398510 CFAP65Q6ZU64 1925 aaKnown RBP3.48□□□□□ -1.85
CHD9-202ENST00000398510 FTSJ3Q8IY81 847 aaKnown RBP3.48□□□□□ -1.85
CHD9-202ENST00000398510 LMOD3Q0VAK6 560 aa3.47□□□□□ -1.85
CHD9-202ENST00000398510 ARHGAP5Q13017 1502 aa3.47□□□□□ -1.85
CHD9-202ENST00000398510 SOGA1O94964 1423 aa3.47□□□□□ -1.85
CHD9-202ENST00000398510 SMC4Q9NTJ3 1288 aa3.47□□□□□ -1.85
CHD9-202ENST00000398510 POGKQ9P215 609 aa3.47□□□□□ -1.85
CHD9-202ENST00000398510 GRWD1Q9BQ67 446 aaKnown RBP eCLIP3.46□□□□□ -1.851e-7■■■■□ 23.5
CHD9-202ENST00000398510 CACNA1FO60840 1977 aa3.46□□□□□ -1.86
CHD9-202ENST00000398510 TERF2IPQ9NYB0 399 aa3.46□□□□□ -1.86
CHD9-202ENST00000398510 DHX37Q8IY37 1157 aaKnown RBP3.46□□□□□ -1.86
CHD9-202ENST00000398510 ANKRD30BQ9BXX2 1392 aa3.46□□□□□ -1.86
CHD9-202ENST00000398510 TNNT2P45379 298 aaPredicted RBP3.46□□□□□ -1.86
CHD9-202ENST00000398510 NGEFQ8N5V2 710 aa3.46□□□□□ -1.86
CHD9-202ENST00000398510 TNIKQ9UKE5 1360 aa3.46□□□□□ -1.86
CHD9-202ENST00000398510 TRIM21P19474 475 aaKnown RBP3.46□□□□□ -1.86
CHD9-202ENST00000398510 EIF4G3O43432 1585 aaKnown RBP3.46□□□□□ -1.86
CHD9-202ENST00000398510 CADPSQ9ULU8 1353 aa3.46□□□□□ -1.86
CHD9-202ENST00000398510 WASHC2CQ9Y4E1 1318 aa3.46□□□□□ -1.86
CHD9-202ENST00000398510 RDXP35241 583 aaKnown RBP3.46□□□□□ -1.86
CHD9-202ENST00000398510 CCDC144AA2RUR9 1427 aa3.45□□□□□ -1.86
CHD9-202ENST00000398510 CHGAP10645 457 aaKnown RBP3.45□□□□□ -1.86
CHD9-202ENST00000398510 SRPK2P78362 688 aaKnown RBP3.45□□□□□ -1.86
CHD9-202ENST00000398510 CSPP1Q1MSJ5 1256 aa3.45□□□□□ -1.86
CHD9-202ENST00000398510 HDGFL2Q7Z4V5 671 aaPredicted RBP3.45□□□□□ -1.86
CHD9-202ENST00000398510 KTN1Q86UP2 1357 aaKnown RBP3.45□□□□□ -1.86
CHD9-202ENST00000398510 E9PSI1 815 aa3.45□□□□□ -1.86
CHD9-202ENST00000398510 CCDC7Q96M83 1385 aa3.45□□□□□ -1.86
CHD9-202ENST00000398510 SYAP1Q96A49 352 aaPredicted RBP3.45□□□□□ -1.86
CHD9-202ENST00000398510 VPS8Q8N3P4 1428 aa3.45□□□□□ -1.86
CHD9-202ENST00000398510 TCEAL9Q9UHQ7 104 aa3.45□□□□□ -1.86
CHD9-202ENST00000398510 HMGB1P1B2RPK0 211 aaPredicted RBP3.45□□□□□ -1.86
CHD9-202ENST00000398510 DNAI2Q9GZS0 605 aa3.45□□□□□ -1.86
CHD9-202ENST00000398510 GNL2Q13823 731 aaKnown RBP3.44□□□□□ -1.86
CHD9-202ENST00000398510 EFCAB2Q5VUJ9 269 aa3.44□□□□□ -1.86
CHD9-202ENST00000398510 TRHP20396 242 aaPredicted RBP3.44□□□□□ -1.86
CHD9-202ENST00000398510 HRCP23327 699 aa3.44□□□□□ -1.86
CHD9-202ENST00000398510 CARMIL1Q5VZK9 1371 aa3.44□□□□□ -1.86
CHD9-202ENST00000398510 ABCF1Q8NE71 845 aaKnown RBP eCLIP3.44□□□□□ -1.86
CHD9-202ENST00000398510 IPO8O15397 1037 aaKnown RBP3.44□□□□□ -1.86
CHD9-202ENST00000398510 PHF14O94880 888 aa3.44□□□□□ -1.86
CHD9-202ENST00000398510 A0A0G2JS52 829 aa3.44□□□□□ -1.86
CHD9-202ENST00000398510 RTF1Q92541 710 aaKnown RBP3.44□□□□□ -1.86
CHD9-202ENST00000398510 POLR1AO95602 1720 aaPredicted RBP3.44□□□□□ -1.86
CHD9-202ENST00000398510 G3V3G9 751 aa3.43□□□□□ -1.86
CHD9-202ENST00000398510 DCAF8Q5TAQ9 597 aa3.43□□□□□ -1.86
CHD9-202ENST00000398510 GOLGA6L1Q8N7Z2 621 aa3.43□□□□□ -1.86
CHD9-202ENST00000398510 WDHD1O75717 1129 aaPredicted RBP3.43□□□□□ -1.86
CHD9-202ENST00000398510 ABCA5Q8WWZ7 1642 aa3.43□□□□□ -1.86
CHD9-202ENST00000398510 NCAPD3P42695 1498 aa3.43□□□□□ -1.86
CHD9-202ENST00000398510 FANCAO15360 1455 aa3.43□□□□□ -1.86
CHD9-202ENST00000398510 HMMRO75330 724 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms