RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 HDGFL2Q7Z4V5 671 aaPredicted RBP14.63□□□□□ -0.07
TTC28-201ENST00000397906 PKD2Q13563 968 aa14.63□□□□□ -0.07
TTC28-201ENST00000397906 TRIM44Q96DX7 344 aaPredicted RBP14.62□□□□□ -0.07
TTC28-201ENST00000397906 PTMAP06454 111 aaKnown RBP14.62□□□□□ -0.07
TTC28-201ENST00000397906 ARHGAP35Q9NRY4 1499 aa14.61□□□□□ -0.07
TTC28-201ENST00000397906 PDS5BQ9NTI5 1447 aa14.61□□□□□ -0.07
TTC28-201ENST00000397906 KIF3BO15066 747 aa14.59□□□□□ -0.07
TTC28-201ENST00000397906 HNRNPMP52272 730 aaKnown RBP eCLIP14.58□□□□□ -0.084e-7■■■■□ 24.4
TTC28-201ENST00000397906 ROCK2O75116 1388 aaKnown RBP14.57□□□□□ -0.08
TTC28-201ENST00000397906 HSP90AB1P08238 724 aaKnown RBP14.57□□□□□ -0.08
TTC28-201ENST00000397906 CHMP3Q9Y3E7 222 aa14.56□□□□□ -0.08
TTC28-201ENST00000397906 TMX4Q9H1E5 349 aaPredicted RBP14.56□□□□□ -0.08
TTC28-201ENST00000397906 EID1Q9Y6B2 187 aa14.55□□□□□ -0.08
TTC28-201ENST00000397906 DNTTIP2Q5QJE6 756 aaKnown RBP14.55□□□□□ -0.08
TTC28-201ENST00000397906 EFCAB2Q5VUJ9 269 aa14.55□□□□□ -0.08
TTC28-201ENST00000397906 AMER1Q5JTC6 1135 aaPredicted RBP14.55□□□□□ -0.08
TTC28-201ENST00000397906 CHMP4BQ9H444 224 aaKnown RBP14.54□□□□□ -0.08
TTC28-201ENST00000397906 NUP155O75694 1391 aa14.54□□□□□ -0.08
TTC28-201ENST00000397906 NGDNQ8NEJ9 315 aaKnown RBP14.54□□□□□ -0.08
TTC28-201ENST00000397906 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.54□□□□□ -0.08
TTC28-201ENST00000397906 WASHC2CQ9Y4E1 1318 aa14.54□□□□□ -0.08
TTC28-201ENST00000397906 AEBP2Q6ZN18 517 aaPredicted RBP14.53□□□□□ -0.08
TTC28-201ENST00000397906 LTV1Q96GA3 475 aaPredicted RBP14.53□□□□□ -0.08
TTC28-201ENST00000397906 SPRYD3Q8NCJ5 442 aa14.53□□□□□ -0.08
TTC28-201ENST00000397906 CYB5RLQ6IPT4 315 aa14.53□□□□□ -0.08
TTC28-201ENST00000397906 SMARCA2P51531 1590 aa14.52□□□□□ -0.08
TTC28-201ENST00000397906 CCDC88BA6NC98 1476 aa14.52□□□□□ -0.08
TTC28-201ENST00000397906 U2AF1L5P0DN76 240 aaPredicted RBP14.52□□□□□ -0.08
TTC28-201ENST00000397906 U2AF1Q01081 240 aaKnown RBP eCLIP14.52□□□□□ -0.08
TTC28-201ENST00000397906 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.52□□□□□ -0.088e-7■■■□□ 15.8
TTC28-201ENST00000397906 MS4A1P11836 297 aa14.51□□□□□ -0.09
TTC28-201ENST00000397906 G3V3G9 751 aa14.51□□□□□ -0.09
TTC28-201ENST00000397906 DCAF8Q5TAQ9 597 aa14.51□□□□□ -0.09
TTC28-201ENST00000397906 GNL2Q13823 731 aaKnown RBP14.5□□□□□ -0.09
TTC28-201ENST00000397906 HSPA5P11021 654 aaKnown RBP14.5□□□□□ -0.09
TTC28-201ENST00000397906 KANK4Q5T7N3 995 aaPredicted RBP14.49□□□□□ -0.09
TTC28-201ENST00000397906 B4GALNT3Q6L9W6 998 aa14.48□□□□□ -0.09
TTC28-201ENST00000397906 KTN1Q86UP2 1357 aaKnown RBP14.48□□□□□ -0.09
TTC28-201ENST00000397906 MROH2BQ7Z745 1585 aa14.48□□□□□ -0.09
TTC28-201ENST00000397906 GOLGA6L4A6NEF3 574 aa14.47□□□□□ -0.09
TTC28-201ENST00000397906 SETD5Q9C0A6 1442 aa14.47□□□□□ -0.09
TTC28-201ENST00000397906 GORABQ5T7V8 394 aa14.46□□□□□ -0.09
TTC28-201ENST00000397906 SPAG9O60271 1321 aaKnown RBP14.46□□□□□ -0.09
TTC28-201ENST00000397906 MSH5O43196 834 aa14.46□□□□□ -0.09
TTC28-201ENST00000397906 ITPRIPQ8IWB1 547 aa14.46□□□□□ -0.1
TTC28-201ENST00000397906 AMPHP49418 695 aa14.46□□□□□ -0.1
TTC28-201ENST00000397906 TAF7LQ5H9L4 462 aa14.46□□□□□ -0.1
TTC28-201ENST00000397906 ANKRD30AQ9BXX3 1397 aa14.45□□□□□ -0.1
TTC28-201ENST00000397906 WIZO95785 1651 aa14.44□□□□□ -0.1
TTC28-201ENST00000397906 MCCP23508 829 aa14.44□□□□□ -0.1
TTC28-201ENST00000397906 EIF3AQ14152 1382 aaKnown RBP14.44□□□□□ -0.1
TTC28-201ENST00000397906 MPHOSPH9Q99550 1183 aa14.43□□□□□ -0.1
TTC28-201ENST00000397906 GLIPR1L2Q4G1C9 344 aa14.43□□□□□ -0.1
TTC28-201ENST00000397906 MEX3CQ5U5Q3 659 aaKnown RBP14.43□□□□□ -0.1
TTC28-201ENST00000397906 ANP32EQ9BTT0 268 aa14.43□□□□□ -0.1
TTC28-201ENST00000397906 FHOD3Q2V2M9 1422 aa14.43□□□□□ -0.1
TTC28-201ENST00000397906 GOLGA6L6A8MZA4 724 aa14.42□□□□□ -0.1
TTC28-201ENST00000397906 SLC4A10Q6U841 1118 aa14.42□□□□□ -0.1
TTC28-201ENST00000397906 FMN1Q68DA7 1419 aa14.41□□□□□ -0.1
TTC28-201ENST00000397906 GTF2E1P29083 439 aaPredicted RBP14.41□□□□□ -0.1
TTC28-201ENST00000397906 HSCBQ8IWL3 235 aa14.41□□□□□ -0.1
TTC28-201ENST00000397906 CCDC146Q8IYE0 955 aa14.41□□□□□ -0.1
TTC28-201ENST00000397906 EVA1CP58658 441 aa14.4□□□□□ -0.1
TTC28-201ENST00000397906 TRAK1Q9UPV9 953 aa14.4□□□□□ -0.1
TTC28-201ENST00000397906 TERF2IPQ9NYB0 399 aa14.4□□□□□ -0.1
TTC28-201ENST00000397906 KIAA1211Q6ZU35 1233 aa14.4□□□□□ -0.1
TTC28-201ENST00000397906 PPP4R2Q9NY27 417 aa14.4□□□□□ -0.1
TTC28-201ENST00000397906 STK31Q9BXU1 1019 aa14.4□□□□□ -0.1
TTC28-201ENST00000397906 FRAT2O75474 233 aaPredicted RBP14.39□□□□□ -0.11
TTC28-201ENST00000397906 IPO8O15397 1037 aaKnown RBP14.37□□□□□ -0.11
TTC28-201ENST00000397906 CALD1Q05682 793 aaKnown RBP14.37□□□□□ -0.11
TTC28-201ENST00000397906 JPH4Q96JJ6 628 aa14.36□□□□□ -0.11
TTC28-201ENST00000397906 DRC7Q8IY82 874 aa14.36□□□□□ -0.11
TTC28-201ENST00000397906 CCDC18Q5T9S5 1454 aa14.36□□□□□ -0.11
TTC28-201ENST00000397906 SYTL4Q96C24 671 aaPredicted RBP14.36□□□□□ -0.11
TTC28-201ENST00000397906 VPS8Q8N3P4 1428 aa14.36□□□□□ -0.11
TTC28-201ENST00000397906 TRIM6-TRIM34B2RNG4 842 aa14.35□□□□□ -0.11
TTC28-201ENST00000397906 KLHL34Q8N239 644 aa14.35□□□□□ -0.11
TTC28-201ENST00000397906 SMC4Q9NTJ3 1288 aa14.35□□□□□ -0.11
TTC28-201ENST00000397906 RAB3GAP2Q9H2M9 1393 aa14.34□□□□□ -0.11
TTC28-201ENST00000397906 HSP90B1P14625 803 aaKnown RBP14.34□□□□□ -0.11
TTC28-201ENST00000397906 PHF23Q9BUL5 403 aaPredicted RBP14.34□□□□□ -0.11
TTC28-201ENST00000397906 CLUAP1Q96AJ1 413 aa14.33□□□□□ -0.12
TTC28-201ENST00000397906 TOMM22Q9NS69 142 aa14.32□□□□□ -0.12
TTC28-201ENST00000397906 NGEFQ8N5V2 710 aa14.32□□□□□ -0.12
TTC28-201ENST00000397906 VPS53Q5VIR6 699 aa14.31□□□□□ -0.12
TTC28-201ENST00000397906 OSCARQ8IYS5 282 aa14.31□□□□□ -0.12
TTC28-201ENST00000397906 NOL8Q76FK4 1167 aaKnown RBP14.31□□□□□ -0.12
TTC28-201ENST00000397906 RTN4Q9NQC3 1192 aaKnown RBP14.31□□□□□ -0.12
TTC28-201ENST00000397906 RRP7AQ9Y3A4 280 aaKnown RBP14.31□□□□□ -0.12
TTC28-201ENST00000397906 CADPSQ9ULU8 1353 aa14.3□□□□□ -0.12
TTC28-201ENST00000397906 RAPGEF2Q9Y4G8 1499 aa14.3□□□□□ -0.12
TTC28-201ENST00000397906 ANO8Q9HCE9 1232 aaPredicted RBP14.3□□□□□ -0.12
TTC28-201ENST00000397906 ERICH6BQ5W0A0 696 aa14.3□□□□□ -0.12
TTC28-201ENST00000397906 GPATCH3Q96I76 525 aa14.3□□□□□ -0.12
TTC28-201ENST00000397906 PRDM2Q13029 1718 aa14.29□□□□□ -0.12
TTC28-201ENST00000397906 PDE4CQ08493 712 aa14.29□□□□□ -0.12
TTC28-201ENST00000397906 NRDCO43847 1150 aa14.28□□□□□ -0.12
TTC28-201ENST00000397906 FAM69CQ0P6D2 419 aa14.28□□□□□ -0.12
TTC28-201ENST00000397906 C1orf141Q5JVX7 400 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms