RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 PBRM1Q86U86 1689 aa17.59■□□□□ 0.41
SHMT1-205ENST00000395684 CCDC7Q96M83 1385 aa17.58■□□□□ 0.41
SHMT1-205ENST00000395684 PRKRIP1Q9H875 184 aaPredicted RBP17.58■□□□□ 0.4
SHMT1-205ENST00000395684 ADAMTS12P58397 1594 aa17.56■□□□□ 0.4
SHMT1-205ENST00000395684 DAPK1P53355 1430 aa17.56■□□□□ 0.4
SHMT1-205ENST00000395684 ZNF644Q9H582 1327 aaPredicted RBP17.56■□□□□ 0.4
SHMT1-205ENST00000395684 RPRD2Q5VT52 1461 aaKnown RBP17.56■□□□□ 0.4
SHMT1-205ENST00000395684 ROCK1Q13464 1354 aa17.56■□□□□ 0.4
SHMT1-205ENST00000395684 ABCC5O15440 1437 aa17.55■□□□□ 0.4
SHMT1-205ENST00000395684 TEX14Q8IWB6 1497 aa17.53■□□□□ 0.4
SHMT1-205ENST00000395684 FAM9BQ8IZU0 186 aa17.53■□□□□ 0.4
SHMT1-205ENST00000395684 SPATA31E1Q6ZUB1 1445 aa17.51■□□□□ 0.39
SHMT1-205ENST00000395684 SLC4A1APQ9BWU0 796 aaKnown RBP17.51■□□□□ 0.39
SHMT1-205ENST00000395684 MSH5O43196 834 aa17.51■□□□□ 0.39
SHMT1-205ENST00000395684 MRS2Q9HD23 443 aa17.51■□□□□ 0.39
SHMT1-205ENST00000395684 KIF7Q2M1P5 1343 aa17.51■□□□□ 0.39
SHMT1-205ENST00000395684 DNMT1P26358 1616 aaKnown RBP17.49■□□□□ 0.39
SHMT1-205ENST00000395684 CDK11AQ9UQ88 783 aaPredicted RBP17.49■□□□□ 0.39
SHMT1-205ENST00000395684 ERICH6BQ5W0A0 696 aa17.48■□□□□ 0.39
SHMT1-205ENST00000395684 DISP1Q96F81 1524 aa17.48■□□□□ 0.39
SHMT1-205ENST00000395684 NUP153P49790 1475 aaKnown RBP17.48■□□□□ 0.39
SHMT1-205ENST00000395684 ZBED9Q6R2W3 1325 aa17.46■□□□□ 0.39
SHMT1-205ENST00000395684 PPP4R2Q9NY27 417 aa17.46■□□□□ 0.39
SHMT1-205ENST00000395684 ZNF608Q9ULD9 1512 aaPredicted RBP17.45■□□□□ 0.38
SHMT1-205ENST00000395684 KIAA0556O60303 1618 aa17.45■□□□□ 0.38
SHMT1-205ENST00000395684 KIAA0586Q9BVV6 1533 aa17.44■□□□□ 0.38
SHMT1-205ENST00000395684 MRC2Q9UBG0 1479 aa17.44■□□□□ 0.38
SHMT1-205ENST00000395684 FANCIQ9NVI1 1328 aa17.43■□□□□ 0.38
SHMT1-205ENST00000395684 PZPP20742 1482 aa17.43■□□□□ 0.38
SHMT1-205ENST00000395684 PRG4Q92954 1404 aaPredicted RBP17.4■□□□□ 0.38
SHMT1-205ENST00000395684 RAPGEF6Q8TEU7 1601 aa17.4■□□□□ 0.38
SHMT1-205ENST00000395684 ERCC6Q03468 1493 aa17.39■□□□□ 0.38
SHMT1-205ENST00000395684 CFDP1Q9UEE9 299 aaPredicted RBP17.39■□□□□ 0.37
SHMT1-205ENST00000395684 B4GALNT3Q6L9W6 998 aa17.38■□□□□ 0.37
SHMT1-205ENST00000395684 POLR1AO95602 1720 aaPredicted RBP17.38■□□□□ 0.37
SHMT1-205ENST00000395684 CAMSAP2Q08AD1 1489 aa17.37■□□□□ 0.37
SHMT1-205ENST00000395684 DHX29Q7Z478 1369 aaKnown RBP17.37■□□□□ 0.37
SHMT1-205ENST00000395684 IFT140Q96RY7 1462 aa17.37■□□□□ 0.37
SHMT1-205ENST00000395684 TROQ12816 1431 aaPredicted RBP17.37■□□□□ 0.37
SHMT1-205ENST00000395684 MBD5Q9P267 1494 aa17.36■□□□□ 0.37
SHMT1-205ENST00000395684 GPATCH8Q9UKJ3 1502 aaKnown RBP17.35■□□□□ 0.37
SHMT1-205ENST00000395684 GRIN2AQ12879 1464 aa17.35■□□□□ 0.37
SHMT1-205ENST00000395684 CNGB1Q14028 1251 aaPredicted RBP17.34■□□□□ 0.37
SHMT1-205ENST00000395684 ZNF326Q5BKZ1 582 aaKnown RBP17.34■□□□□ 0.37
SHMT1-205ENST00000395684 ZNF777Q9ULD5 760 aaPredicted RBP17.34■□□□□ 0.37
SHMT1-205ENST00000395684 KIAA1107Q9UPP5 1409 aa17.34■□□□□ 0.37
SHMT1-205ENST00000395684 USP47Q96K76 1375 aa17.34■□□□□ 0.37
SHMT1-205ENST00000395684 PKD2Q13563 968 aa17.34■□□□□ 0.37
SHMT1-205ENST00000395684 BCORL1Q5H9F3 1711 aa17.32■□□□□ 0.36
SHMT1-205ENST00000395684 POLR3GLQ9BT43 218 aa17.32■□□□□ 0.36
SHMT1-205ENST00000395684 PLB1Q6P1J6 1458 aa17.32■□□□□ 0.36
SHMT1-205ENST00000395684 ADGRL2O95490 1459 aa17.31■□□□□ 0.36
SHMT1-205ENST00000395684 KIF14Q15058 1648 aa17.3■□□□□ 0.36
SHMT1-205ENST00000395684 SMG6Q86US8 1419 aaKnown RBP17.29■□□□□ 0.36
SHMT1-205ENST00000395684 ADGBQ8N7X0 1667 aa17.28■□□□□ 0.36
SHMT1-205ENST00000395684 ANKRD30AQ9BXX3 1397 aa17.28■□□□□ 0.36
SHMT1-205ENST00000395684 ITSN2Q9NZM3 1697 aa17.27■□□□□ 0.36
SHMT1-205ENST00000395684 ANKRD50Q9ULJ7 1429 aa17.27■□□□□ 0.35
SHMT1-205ENST00000395684 KDM5CP41229 1560 aa17.27■□□□□ 0.35
SHMT1-205ENST00000395684 ARID4BQ4LE39 1312 aaPredicted RBP17.26■□□□□ 0.35
SHMT1-205ENST00000395684 NUDCQ9Y266 331 aa17.26■□□□□ 0.35
SHMT1-205ENST00000395684 EIF4G3O43432 1585 aaKnown RBP17.26■□□□□ 0.35
SHMT1-205ENST00000395684 SENP3-EIF4A1A0A087X0R7 540 aa17.24■□□□□ 0.35
SHMT1-205ENST00000395684 BCL11AQ9H165 835 aa17.24■□□□□ 0.35
SHMT1-205ENST00000395684 CROCC2H7BZ55 1655 aa17.24■□□□□ 0.35
SHMT1-205ENST00000395684 ADCY10Q96PN6 1610 aa17.24■□□□□ 0.35
SHMT1-205ENST00000395684 PNISRQ8TF01 805 aaKnown RBP17.24■□□□□ 0.35
SHMT1-205ENST00000395684 CHMP7Q8WUX9 453 aaPredicted RBP17.24■□□□□ 0.35
SHMT1-205ENST00000395684 UHRF1BP1Q6BDS2 1440 aa17.24■□□□□ 0.35
SHMT1-205ENST00000395684 RNF123Q5XPI4 1314 aa17.24■□□□□ 0.35
SHMT1-205ENST00000395684 ERICH6Q7L0X2 663 aa17.24■□□□□ 0.35
SHMT1-205ENST00000395684 NUP155O75694 1391 aa17.23■□□□□ 0.35
SHMT1-205ENST00000395684 CEP170Q5SW79 1584 aa17.22■□□□□ 0.35
SHMT1-205ENST00000395684 CARD11Q9BXL7 1154 aa17.22■□□□□ 0.35
SHMT1-205ENST00000395684 RALGAPBQ86X10 1494 aa17.21■□□□□ 0.35
SHMT1-205ENST00000395684 JPH4Q96JJ6 628 aa17.2■□□□□ 0.34
SHMT1-205ENST00000395684 FBLN2P98095 1184 aa17.2■□□□□ 0.34
SHMT1-205ENST00000395684 ROCK2O75116 1388 aaKnown RBP17.19■□□□□ 0.34
SHMT1-205ENST00000395684 TMC1Q8TDI8 760 aa17.19■□□□□ 0.34
SHMT1-205ENST00000395684 KDM2AQ9Y2K7 1162 aa17.19■□□□□ 0.34
SHMT1-205ENST00000395684 MAGI1Q96QZ7 1491 aaPredicted RBP17.18■□□□□ 0.34
SHMT1-205ENST00000395684 ST20-MTHFSA0A0A6YYL1 179 aa17.18■□□□□ 0.34
SHMT1-205ENST00000395684 PLEKHD1A6NEE1 506 aa17.18■□□□□ 0.34
SHMT1-205ENST00000395684 C9orf84Q5VXU9 1444 aa17.18■□□□□ 0.34
SHMT1-205ENST00000395684 CARMIL2Q6F5E8 1435 aa17.17■□□□□ 0.34
SHMT1-205ENST00000395684 SYNJ2O15056 1496 aa17.17■□□□□ 0.34
SHMT1-205ENST00000395684 ABCC10Q5T3U5 1492 aa17.16■□□□□ 0.34
SHMT1-205ENST00000395684 ARHGEF12Q9NZN5 1544 aa17.16■□□□□ 0.34
SHMT1-205ENST00000395684 CCDC136Q96JN2 1154 aa17.15■□□□□ 0.34
SHMT1-205ENST00000395684 KIF15Q9NS87 1388 aa17.15■□□□□ 0.34
SHMT1-205ENST00000395684 SHANK2Q9UPX8 1470 aa17.15■□□□□ 0.34
SHMT1-205ENST00000395684 CDC42BPAQ5VT25 1732 aa17.15■□□□□ 0.34
SHMT1-205ENST00000395684 DCAF11Q8TEB1 546 aa17.15■□□□□ 0.34
SHMT1-205ENST00000395684 TSPY4P0CV99 314 aa17.14■□□□□ 0.34
SHMT1-205ENST00000395684 TSPY10P0CW01 314 aa17.14■□□□□ 0.34
SHMT1-205ENST00000395684 ATP10BO94823 1461 aa17.14■□□□□ 0.33
SHMT1-205ENST00000395684 LRPPRCP42704 1394 aaKnown RBP17.14■□□□□ 0.33
SHMT1-205ENST00000395684 HNRNPMP52272 730 aaKnown RBP eCLIP17.13■□□□□ 0.33
SHMT1-205ENST00000395684 KDM5DQ9BY66 1539 aa17.13■□□□□ 0.33
SHMT1-205ENST00000395684 NUP160Q12769 1436 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms