RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 SETD5Q9C0A6 1442 aa25.31■■□□□ 1.64
SHANK1-203ENST00000391813 CCDC18Q5T9S5 1454 aa25.3■■□□□ 1.64
SHANK1-203ENST00000391813 MS4A1P11836 297 aa25.3■■□□□ 1.64
SHANK1-203ENST00000391813 MSNP26038 577 aaKnown RBP25.3■■□□□ 1.64
SHANK1-203ENST00000391813 CFAP53Q96M91 514 aa25.3■■□□□ 1.64
SHANK1-203ENST00000391813 CASC1Q6TDU7 716 aa25.29■■□□□ 1.64
SHANK1-203ENST00000391813 CYB5RLQ6IPT4 315 aa25.29■■□□□ 1.64
SHANK1-203ENST00000391813 FHOD3Q2V2M9 1422 aa25.29■■□□□ 1.64
SHANK1-203ENST00000391813 POGKQ9P215 609 aa25.28■■□□□ 1.64
SHANK1-203ENST00000391813 HSP90AB1P08238 724 aaKnown RBP25.27■■□□□ 1.64
SHANK1-203ENST00000391813 ANKRD30AQ9BXX3 1397 aa25.26■■□□□ 1.64
SHANK1-203ENST00000391813 HSCBQ8IWL3 235 aa25.26■■□□□ 1.63
SHANK1-203ENST00000391813 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.26■■□□□ 1.63
SHANK1-203ENST00000391813 CDK11BP21127 795 aaKnown RBP25.25■■□□□ 1.63
SHANK1-203ENST00000391813 CHMP4BQ9H444 224 aaKnown RBP25.25■■□□□ 1.63
SHANK1-203ENST00000391813 MRC2Q9UBG0 1479 aa25.25■■□□□ 1.63
SHANK1-203ENST00000391813 IGF1RP08069 1367 aa25.24■■□□□ 1.63
SHANK1-203ENST00000391813 HAP1P54257 671 aaPredicted RBP25.23■■□□□ 1.63
SHANK1-203ENST00000391813 SENP3Q9H4L4 574 aaPredicted RBP25.23■■□□□ 1.63
SHANK1-203ENST00000391813 RAD54L2Q9Y4B4 1467 aa25.22■■□□□ 1.63
SHANK1-203ENST00000391813 PTMSP20962 102 aa25.21■■□□□ 1.63
SHANK1-203ENST00000391813 SPAG9O60271 1321 aaKnown RBP25.21■■□□□ 1.63
SHANK1-203ENST00000391813 RSPH6AQ9H0K4 717 aa25.21■■□□□ 1.63
SHANK1-203ENST00000391813 HSPA5P11021 654 aaKnown RBP25.21■■□□□ 1.63
SHANK1-203ENST00000391813 GRIN2BQ13224 1484 aa25.19■■□□□ 1.62
SHANK1-203ENST00000391813 RCAN3Q9UKA8 241 aa25.18■■□□□ 1.62
SHANK1-203ENST00000391813 NUDCQ9Y266 331 aa25.18■■□□□ 1.62
SHANK1-203ENST00000391813 KANK4Q5T7N3 995 aaPredicted RBP25.17■■□□□ 1.62
SHANK1-203ENST00000391813 CHAF1AQ13111 956 aaPredicted RBP25.16■■□□□ 1.62
SHANK1-203ENST00000391813 FRAT1Q92837 279 aaPredicted RBP25.15■■□□□ 1.62
SHANK1-203ENST00000391813 IFT140Q96RY7 1462 aa25.15■■□□□ 1.62
SHANK1-203ENST00000391813 AQRO60306 1485 aaKnown RBP eCLIP25.14■■□□□ 1.61
SHANK1-203ENST00000391813 ZRSR1Q15695 479 aaKnown RBP25.12■■□□□ 1.61
SHANK1-203ENST00000391813 KIF3BO15066 747 aa25.11■■□□□ 1.61
SHANK1-203ENST00000391813 GBP4Q96PP9 640 aa25.11■■□□□ 1.61
SHANK1-203ENST00000391813 RAB3GAP2Q9H2M9 1393 aa25.1■■□□□ 1.61
SHANK1-203ENST00000391813 GOLGA6L3A6NEY3 463 aa25.1■■□□□ 1.61
SHANK1-203ENST00000391813 CFAP44Q96MT7 982 aa25.1■■□□□ 1.61
SHANK1-203ENST00000391813 ZBTB7CA1YPR0 619 aa25.09■■□□□ 1.61
SHANK1-203ENST00000391813 PKD2Q13563 968 aa25.09■■□□□ 1.61
SHANK1-203ENST00000391813 NESP48681 1621 aa25.08■■□□□ 1.6
SHANK1-203ENST00000391813 DCAF11Q8TEB1 546 aa25.07■■□□□ 1.6
SHANK1-203ENST00000391813 NUP155O75694 1391 aa25.07■■□□□ 1.6
SHANK1-203ENST00000391813 HNRNPMP52272 730 aaKnown RBP eCLIP25.06■■□□□ 1.6
SHANK1-203ENST00000391813 BICRAQ9NZM4 1560 aa25.05■■□□□ 1.6
SHANK1-203ENST00000391813 PDE3BQ13370 1112 aa25.04■■□□□ 1.6
SHANK1-203ENST00000391813 RALBP1Q15311 655 aa25.04■■□□□ 1.6
SHANK1-203ENST00000391813 PLCB2Q00722 1185 aa25.04■■□□□ 1.6
SHANK1-203ENST00000391813 GSE1Q14687 1217 aa25.04■■□□□ 1.6
SHANK1-203ENST00000391813 NEUROD2Q15784 382 aa25.04■■□□□ 1.6
SHANK1-203ENST00000391813 NRDCO43847 1150 aa25.03■■□□□ 1.6
SHANK1-203ENST00000391813 CC2D1BQ5T0F9 858 aaKnown RBP25.03■■□□□ 1.6
SHANK1-203ENST00000391813 MAPK8IP3Q9UPT6 1336 aa25.02■■□□□ 1.6
SHANK1-203ENST00000391813 HSP90AA2PQ14568 343 aaPredicted RBP25.01■■□□□ 1.59
SHANK1-203ENST00000391813 TMF1P82094 1093 aa25.01■■□□□ 1.59
SHANK1-203ENST00000391813 GOLGA6L6A8MZA4 724 aa25.01■■□□□ 1.59
SHANK1-203ENST00000391813 SLKQ9H2G2 1235 aaPredicted RBP25.01■■□□□ 1.59
SHANK1-203ENST00000391813 RUSC2Q8N2Y8 1516 aa25.01■■□□□ 1.59
SHANK1-203ENST00000391813 WASHC2CQ9Y4E1 1318 aa25■■□□□ 1.59
SHANK1-203ENST00000391813 A0A0G2JS52 829 aa24.99■■□□□ 1.59
SHANK1-203ENST00000391813 KTN1Q86UP2 1357 aaKnown RBP24.99■■□□□ 1.59
SHANK1-203ENST00000391813 PLEKHG5O94827 1062 aa24.99■■□□□ 1.59
SHANK1-203ENST00000391813 LMOD2Q6P5Q4 547 aa24.98■■□□□ 1.59
SHANK1-203ENST00000391813 DHX57Q6P158 1386 aaKnown RBP24.97■■□□□ 1.59
SHANK1-203ENST00000391813 EID1Q9Y6B2 187 aa24.97■■□□□ 1.59
SHANK1-203ENST00000391813 TOPBP1Q92547 1522 aa24.97■■□□□ 1.59
SHANK1-203ENST00000391813 GZF1Q9H116 711 aaPredicted RBP24.95■■□□□ 1.58
SHANK1-203ENST00000391813 KIAA2012Q0VF49 1180 aa24.94■■□□□ 1.58
SHANK1-203ENST00000391813 FAM69CQ0P6D2 419 aa24.93■■□□□ 1.58
SHANK1-203ENST00000391813 MPHOSPH9Q99550 1183 aa24.93■■□□□ 1.58
SHANK1-203ENST00000391813 SPRYD3Q8NCJ5 442 aa24.93■■□□□ 1.58
SHANK1-203ENST00000391813 PDE4AP27815 886 aa24.92■■□□□ 1.58
SHANK1-203ENST00000391813 LAMC3Q9Y6N6 1575 aa24.92■■□□□ 1.58
SHANK1-203ENST00000391813 RWDD1Q9H446 243 aaPredicted RBP24.92■■□□□ 1.58
SHANK1-203ENST00000391813 DNAJC5BQ9UF47 199 aa24.91■■□□□ 1.58
SHANK1-203ENST00000391813 ZBED9Q6R2W3 1325 aa24.9■■□□□ 1.58
SHANK1-203ENST00000391813 SRPK2P78362 688 aaKnown RBP24.87■■□□□ 1.57
SHANK1-203ENST00000391813 PMFBP1Q8TBY8 1022 aa24.87■■□□□ 1.57
SHANK1-203ENST00000391813 POLA1P09884 1462 aaPredicted RBP24.85■■□□□ 1.57
SHANK1-203ENST00000391813 MCCP23508 829 aa24.84■■□□□ 1.57
SHANK1-203ENST00000391813 VSIG10Q8N0Z9 540 aa24.84■■□□□ 1.57
SHANK1-203ENST00000391813 GOLGA6L4A6NEF3 574 aa24.84■■□□□ 1.57
SHANK1-203ENST00000391813 ROCK2O75116 1388 aaKnown RBP24.84■■□□□ 1.57
SHANK1-203ENST00000391813 DNMBPQ6XZF7 1577 aa24.83■■□□□ 1.57
SHANK1-203ENST00000391813 TPRNQ4KMQ1 711 aa24.83■■□□□ 1.57
SHANK1-203ENST00000391813 NLRP13Q86W25 1043 aa24.83■■□□□ 1.57
SHANK1-203ENST00000391813 SYAP1Q96A49 352 aaPredicted RBP24.82■■□□□ 1.56
SHANK1-203ENST00000391813 PRG4Q92954 1404 aaPredicted RBP24.82■■□□□ 1.56
SHANK1-203ENST00000391813 FAM161AQ3B820 660 aa24.81■■□□□ 1.56
SHANK1-203ENST00000391813 DDX11L8A8MPP1 907 aa24.8■■□□□ 1.56
SHANK1-203ENST00000391813 IPO8O15397 1037 aaKnown RBP24.8■■□□□ 1.56
SHANK1-203ENST00000391813 CENPQQ7L2Z9 268 aaPredicted RBP24.8■■□□□ 1.56
SHANK1-203ENST00000391813 PHLDB1Q86UU1 1377 aa24.79■■□□□ 1.56
SHANK1-203ENST00000391813 STK26Q9P289 416 aa24.77■■□□□ 1.56
SHANK1-203ENST00000391813 HDGFL2Q7Z4V5 671 aaPredicted RBP24.77■■□□□ 1.56
SHANK1-203ENST00000391813 PRKRIP1Q9H875 184 aaPredicted RBP24.76■■□□□ 1.55
SHANK1-203ENST00000391813 GOLGA2Q08379 1002 aa24.76■■□□□ 1.55
SHANK1-203ENST00000391813 CALD1Q05682 793 aaKnown RBP24.76■■□□□ 1.55
SHANK1-203ENST00000391813 SYNJ2O15056 1496 aa24.76■■□□□ 1.55
SHANK1-203ENST00000391813 MYOM3Q5VTT5 1437 aa24.75■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms