RNA–Protein interactions for RNA: ENST00000381089.7

VCX3A-201, Transcript of variable charge X-linked 3A, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VCX3A, Length 995 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-201ENST00000381089 YEATS2Q9ULM3 1422 aa26.45■■□□□ 1.82
VCX3A-201ENST00000381089 EHMT2Q96KQ7 1210 aa26.44■■□□□ 1.82
VCX3A-201ENST00000381089 EFCAB2Q5VUJ9 269 aa26.43■■□□□ 1.82
VCX3A-201ENST00000381089 PLPPR3Q6T4P5 718 aa26.41■■□□□ 1.82
VCX3A-201ENST00000381089 MYO5CQ9NQX4 1742 aa26.41■■□□□ 1.82
VCX3A-201ENST00000381089 ARHGAP35Q9NRY4 1499 aa26.39■■□□□ 1.82
VCX3A-201ENST00000381089 MLECQ14165 292 aa26.39■■□□□ 1.82
VCX3A-201ENST00000381089 KIF14Q15058 1648 aa26.37■■□□□ 1.81
VCX3A-201ENST00000381089 FER1L4A9Z1Z3 1794 aa26.36■■□□□ 1.81
VCX3A-201ENST00000381089 CLIP1P30622 1438 aa26.36■■□□□ 1.81
VCX3A-201ENST00000381089 ATP10AO60312 1499 aa26.36■■□□□ 1.81
VCX3A-201ENST00000381089 SIGLEC1Q9BZZ2 1709 aa26.34■■□□□ 1.81
VCX3A-201ENST00000381089 C9orf84Q5VXU9 1444 aa26.34■■□□□ 1.81
VCX3A-201ENST00000381089 TROQ12816 1431 aaPredicted RBP26.33■■□□□ 1.81
VCX3A-201ENST00000381089 HSPA2P54652 639 aa26.32■■□□□ 1.8
VCX3A-201ENST00000381089 ZNF518AQ6AHZ1 1483 aa26.31■■□□□ 1.8
VCX3A-201ENST00000381089 ARHGAP5Q13017 1502 aa26.31■■□□□ 1.8
VCX3A-201ENST00000381089 ARHGEF12Q9NZN5 1544 aa26.28■■□□□ 1.8
VCX3A-201ENST00000381089 MYT1LQ9UL68 1186 aa26.27■■□□□ 1.8
VCX3A-201ENST00000381089 CHIC1Q5VXU3 224 aa26.26■■□□□ 1.79
VCX3A-201ENST00000381089 KDM5CP41229 1560 aa26.23■■□□□ 1.79
VCX3A-201ENST00000381089 AFAP1Q8N556 730 aa26.21■■□□□ 1.79
VCX3A-201ENST00000381089 CCDC18Q5T9S5 1454 aa26.2■■□□□ 1.78
VCX3A-201ENST00000381089 PREX1Q8TCU6 1659 aa26.19■■□□□ 1.78
VCX3A-201ENST00000381089 LRRIQ1Q96JM4 1722 aa26.18■■□□□ 1.78
VCX3A-201ENST00000381089 CASKIN1Q8WXD9 1431 aa26.15■■□□□ 1.78
VCX3A-201ENST00000381089 CDC42BPBQ9Y5S2 1711 aa26.15■■□□□ 1.78
VCX3A-201ENST00000381089 DIP2CQ9Y2E4 1556 aa26.15■■□□□ 1.78
VCX3A-201ENST00000381089 CEBPAP49715 358 aaPredicted RBP26.14■■□□□ 1.78
VCX3A-201ENST00000381089 MLH3Q9UHC1 1453 aa26.14■■□□□ 1.78
VCX3A-201ENST00000381089 REREQ9P2R6 1566 aa26.14■■□□□ 1.78
VCX3A-201ENST00000381089 PREX2Q70Z35 1606 aa26.14■■□□□ 1.77
VCX3A-201ENST00000381089 CERKQ8TCT0 537 aa26.13■■□□□ 1.77
VCX3A-201ENST00000381089 ESF1Q9H501 851 aaKnown RBP26.13■■□□□ 1.77
VCX3A-201ENST00000381089 DMRT2Q9Y5R5 561 aa26.11■■□□□ 1.77
VCX3A-201ENST00000381089 UHRF1BP1Q6BDS2 1440 aa26.11■■□□□ 1.77
VCX3A-201ENST00000381089 ABCC1P33527 1531 aa26.1■■□□□ 1.77
VCX3A-201ENST00000381089 ABCA6Q8N139 1617 aa26.09■■□□□ 1.77
VCX3A-201ENST00000381089 SETD1BQ9UPS6 1966 aaKnown RBP26.09■■□□□ 1.77
VCX3A-201ENST00000381089 TRAPPC8Q9Y2L5 1435 aa26.06■■□□□ 1.76
VCX3A-201ENST00000381089 ITSN2Q9NZM3 1697 aa26.06■■□□□ 1.76
VCX3A-201ENST00000381089 AGLP35573 1532 aa26.06■■□□□ 1.76
VCX3A-201ENST00000381089 FYCO1Q9BQS8 1478 aa26.05■■□□□ 1.76
VCX3A-201ENST00000381089 CDC42BPAQ5VT25 1732 aa26.02■■□□□ 1.76
VCX3A-201ENST00000381089 C3P01024 1663 aa25.99■■□□□ 1.75
VCX3A-201ENST00000381089 CNTLNQ9NXG0 1405 aa25.99■■□□□ 1.75
VCX3A-201ENST00000381089 ZNF777Q9ULD5 760 aaPredicted RBP25.99■■□□□ 1.75
VCX3A-201ENST00000381089 KIDINS220Q9ULH0 1771 aa25.98■■□□□ 1.75
VCX3A-201ENST00000381089 STRCQ7RTU9 1775 aa25.97■■□□□ 1.75
VCX3A-201ENST00000381089 SAMD9LQ8IVG5 1584 aa25.94■■□□□ 1.74
VCX3A-201ENST00000381089 SPAG9O60271 1321 aaKnown RBP25.93■■□□□ 1.74
VCX3A-201ENST00000381089 SYCP2Q9BX26 1530 aa25.92■■□□□ 1.74
VCX3A-201ENST00000381089 GPATCH8Q9UKJ3 1502 aaKnown RBP25.92■■□□□ 1.74
VCX3A-201ENST00000381089 PTPRTO14522 1441 aa25.91■■□□□ 1.74
VCX3A-201ENST00000381089 PLEKHH2Q8IVE3 1493 aa25.91■■□□□ 1.74
VCX3A-201ENST00000381089 CFDP1Q9UEE9 299 aaPredicted RBP25.89■■□□□ 1.74
VCX3A-201ENST00000381089 CCNB3Q8WWL7 1395 aa25.87■■□□□ 1.73
VCX3A-201ENST00000381089 HNRNPMP52272 730 aaKnown RBP eCLIP25.87■■□□□ 1.73
VCX3A-201ENST00000381089 KIAA1107Q9UPP5 1409 aa25.87■■□□□ 1.73
VCX3A-201ENST00000381089 NPATQ14207 1427 aa25.86■■□□□ 1.73
VCX3A-201ENST00000381089 MROH2AA6NES4 1674 aa25.86■■□□□ 1.73
VCX3A-201ENST00000381089 MTUS2Q5JR59 1369 aa25.84■■□□□ 1.73
VCX3A-201ENST00000381089 ATP7AQ04656 1500 aa25.84■■□□□ 1.73
VCX3A-201ENST00000381089 SUPT6HQ7KZ85 1726 aaKnown RBP25.83■■□□□ 1.72
VCX3A-201ENST00000381089 ZMYM3Q14202 1370 aa25.82■■□□□ 1.72
VCX3A-201ENST00000381089 NCOA1Q15788 1441 aa25.81■■□□□ 1.72
VCX3A-201ENST00000381089 A2MP01023 1474 aa25.8■■□□□ 1.72
VCX3A-201ENST00000381089 INO80Q9ULG1 1556 aaPredicted RBP25.79■■□□□ 1.72
VCX3A-201ENST00000381089 PLXNC1O60486 1568 aa25.77■■□□□ 1.72
VCX3A-201ENST00000381089 CAMSAP1Q5T5Y3 1602 aa25.76■■□□□ 1.71
VCX3A-201ENST00000381089 CLTCQ00610 1675 aaKnown RBP25.75■■□□□ 1.71
VCX3A-201ENST00000381089 GGT6Q6P531 493 aa25.74■■□□□ 1.71
VCX3A-201ENST00000381089 IQSEC2Q5JU85 1478 aa25.73■■□□□ 1.71
VCX3A-201ENST00000381089 PPP6R1Q9UPN7 881 aa25.73■■□□□ 1.71
VCX3A-201ENST00000381089 ADGBQ8N7X0 1667 aa25.72■■□□□ 1.71
VCX3A-201ENST00000381089 LTBP4Q8N2S1 1624 aa25.72■■□□□ 1.71
VCX3A-201ENST00000381089 EHBP1L1Q8N3D4 1523 aa25.72■■□□□ 1.71
VCX3A-201ENST00000381089 DISP3Q9P2K9 1392 aa25.7■■□□□ 1.71
VCX3A-201ENST00000381089 TIAM1Q13009 1591 aa25.69■■□□□ 1.7
VCX3A-201ENST00000381089 MYO3AQ8NEV4 1616 aa25.68■■□□□ 1.7
VCX3A-201ENST00000381089 PKD2Q13563 968 aa25.68■■□□□ 1.7
VCX3A-201ENST00000381089 ZNF142P52746 1687 aaPredicted RBP25.68■■□□□ 1.7
VCX3A-201ENST00000381089 PTPRKQ15262 1439 aa25.67■■□□□ 1.7
VCX3A-201ENST00000381089 PLA2R1Q13018 1463 aa25.66■■□□□ 1.7
VCX3A-201ENST00000381089 NCKAP5LQ9HCH0 1330 aa25.65■■□□□ 1.7
VCX3A-201ENST00000381089 CEP170BQ9Y4F5 1589 aaPredicted RBP25.65■■□□□ 1.7
VCX3A-201ENST00000381089 RTEL1-TNFRSF6BF6WH68 1400 aa25.65■■□□□ 1.7
VCX3A-201ENST00000381089 CEP162Q5TB80 1403 aa25.65■■□□□ 1.7
VCX3A-201ENST00000381089 ZNF644Q9H582 1327 aaPredicted RBP25.64■■□□□ 1.7
VCX3A-201ENST00000381089 MBD5Q9P267 1494 aa25.63■■□□□ 1.69
VCX3A-201ENST00000381089 DHX29Q7Z478 1369 aaKnown RBP25.6■■□□□ 1.69
VCX3A-201ENST00000381089 TCOF1Q13428 1488 aaKnown RBP25.59■■□□□ 1.69
VCX3A-201ENST00000381089 RSPH4AQ5TD94 716 aa25.58■■□□□ 1.69
VCX3A-201ENST00000381089 ZNF335Q9H4Z2 1342 aaPredicted RBP25.58■■□□□ 1.69
VCX3A-201ENST00000381089 CCDC141Q6ZP82 1450 aa25.57■■□□□ 1.68
VCX3A-201ENST00000381089 A2ML1A8K2U0 1454 aa25.56■■□□□ 1.68
VCX3A-201ENST00000381089 SPATA31D1Q6ZQQ2 1576 aa25.55■■□□□ 1.68
VCX3A-201ENST00000381089 FAM135AQ9P2D6 1515 aa25.54■■□□□ 1.68
VCX3A-201ENST00000381089 KIF3BO15066 747 aa25.54■■□□□ 1.68
VCX3A-201ENST00000381089 CAMSAP2Q08AD1 1489 aa25.53■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms