RNA–Protein interactions for RNA: ENST00000378078.4

RGP1-201, Transcript of RGP1 homolog, RAB6A GEF complex partner 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RGP1, Length 7,018 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RGP1-201ENST00000378078 SIN3AQ96ST3 1273 aa20.83■□□□□ 0.92
RGP1-201ENST00000378078 A0A0U1RQG5 324 aaPredicted RBP20.82■□□□□ 0.92
RGP1-201ENST00000378078 CDCA8Q53HL2 280 aa20.82■□□□□ 0.92
RGP1-201ENST00000378078 NUTM2FA1L443 756 aa20.82■□□□□ 0.92
RGP1-201ENST00000378078 TAF7LQ5H9L4 462 aa20.81■□□□□ 0.92
RGP1-201ENST00000378078 KLHL34Q8N239 644 aa20.81■□□□□ 0.92
RGP1-201ENST00000378078 GORABQ5T7V8 394 aa20.81■□□□□ 0.92
RGP1-201ENST00000378078 FOXD4L1Q9NU39 408 aa20.81■□□□□ 0.92
RGP1-201ENST00000378078 NRDCO43847 1150 aa20.8■□□□□ 0.92
RGP1-201ENST00000378078 CHAF1AQ13111 956 aaPredicted RBP20.8■□□□□ 0.92
RGP1-201ENST00000378078 DCAF11Q8TEB1 546 aa20.8■□□□□ 0.92
RGP1-201ENST00000378078 RAD21O60216 631 aa20.8■□□□□ 0.92
RGP1-201ENST00000378078 GGT6Q6P531 493 aa20.8■□□□□ 0.92
RGP1-201ENST00000378078 ERCC6Q03468 1493 aa20.8■□□□□ 0.92
RGP1-201ENST00000378078 MSNP26038 577 aaKnown RBP20.79■□□□□ 0.92
RGP1-201ENST00000378078 MCCP23508 829 aa20.79■□□□□ 0.92
RGP1-201ENST00000378078 LTV1Q96GA3 475 aaPredicted RBP20.78■□□□□ 0.92
RGP1-201ENST00000378078 MORC1Q86VD1 984 aa20.77■□□□□ 0.92
RGP1-201ENST00000378078 RASSF8Q8NHQ8 419 aa20.77■□□□□ 0.91
RGP1-201ENST00000378078 FOXD4L5Q5VV16 416 aaPredicted RBP20.76■□□□□ 0.91
RGP1-201ENST00000378078 FOXD4L4Q8WXT5 416 aaPredicted RBP20.76■□□□□ 0.91
RGP1-201ENST00000378078 EIF4G1Q04637 1599 aaKnown RBP20.75■□□□□ 0.91
RGP1-201ENST00000378078 KIAA1211Q6ZU35 1233 aa20.74■□□□□ 0.91
RGP1-201ENST00000378078 TOMM22Q9NS69 142 aa20.74■□□□□ 0.91
RGP1-201ENST00000378078 FRAT2O75474 233 aaPredicted RBP20.74■□□□□ 0.91
RGP1-201ENST00000378078 NOP58Q9Y2X3 529 aaKnown RBP20.72■□□□□ 0.91
RGP1-201ENST00000378078 TRIM6-TRIM34B2RNG4 842 aa20.71■□□□□ 0.91
RGP1-201ENST00000378078 ITPRIPQ8IWB1 547 aa20.7■□□□□ 0.9
RGP1-201ENST00000378078 L1TD1Q5T7N2 865 aaKnown RBP20.7■□□□□ 0.9
RGP1-201ENST00000378078 FOXD1Q16676 465 aa20.69■□□□□ 0.9
RGP1-201ENST00000378078 SLC4A10Q6U841 1118 aa20.69■□□□□ 0.9
RGP1-201ENST00000378078 FBXW7Q969H0 707 aa20.69■□□□□ 0.9
RGP1-201ENST00000378078 PES1O00541 588 aaKnown RBP20.67■□□□□ 0.9
RGP1-201ENST00000378078 MARCH6O60337 910 aa20.67■□□□□ 0.9
RGP1-201ENST00000378078 SAMD1Q6SPF0 538 aaPredicted RBP20.67■□□□□ 0.9
RGP1-201ENST00000378078 PHF23Q9BUL5 403 aaPredicted RBP20.67■□□□□ 0.9
RGP1-201ENST00000378078 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.66■□□□□ 0.9
RGP1-201ENST00000378078 PATL2C9JE40 543 aaKnown RBP20.66■□□□□ 0.9
RGP1-201ENST00000378078 CLIP1P30622 1438 aa20.65■□□□□ 0.9
RGP1-201ENST00000378078 GTF2E1P29083 439 aaPredicted RBP20.65■□□□□ 0.9
RGP1-201ENST00000378078 NGEFQ8N5V2 710 aa20.64■□□□□ 0.89
RGP1-201ENST00000378078 CNKSR2Q8WXI2 1034 aa20.64■□□□□ 0.89
RGP1-201ENST00000378078 TMF1P82094 1093 aa20.63■□□□□ 0.89
RGP1-201ENST00000378078 SLKQ9H2G2 1235 aaPredicted RBP20.62■□□□□ 0.89
RGP1-201ENST00000378078 RSF1Q96T23 1441 aaPredicted RBP20.61■□□□□ 0.89
RGP1-201ENST00000378078 FOXD4L6Q3SYB3 417 aaPredicted RBP20.61■□□□□ 0.89
RGP1-201ENST00000378078 FOXD4L3Q6VB84 417 aaPredicted RBP20.61■□□□□ 0.89
RGP1-201ENST00000378078 CHMP4BQ9H444 224 aaKnown RBP20.59■□□□□ 0.89
RGP1-201ENST00000378078 CCDC146Q8IYE0 955 aa20.59■□□□□ 0.89
RGP1-201ENST00000378078 MFAP1P55081 439 aaKnown RBP20.59■□□□□ 0.89
RGP1-201ENST00000378078 MEX3CQ5U5Q3 659 aaKnown RBP20.58■□□□□ 0.89
RGP1-201ENST00000378078 KANK1Q14678 1352 aa20.58■□□□□ 0.89
RGP1-201ENST00000378078 HDGFL2Q7Z4V5 671 aaPredicted RBP20.58■□□□□ 0.88
RGP1-201ENST00000378078 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.58■□□□□ 0.88
RGP1-201ENST00000378078 U2AF1L5P0DN76 240 aaPredicted RBP20.57■□□□□ 0.88
RGP1-201ENST00000378078 U2AF1Q01081 240 aaKnown RBP eCLIP20.57■□□□□ 0.88
RGP1-201ENST00000378078 HDGFP51858 240 aaKnown RBP20.56■□□□□ 0.88
RGP1-201ENST00000378078 PPP4R2Q9NY27 417 aa20.56■□□□□ 0.88
RGP1-201ENST00000378078 MS4A1P11836 297 aa20.56■□□□□ 0.88
RGP1-201ENST00000378078 AEBP2Q6ZN18 517 aaPredicted RBP20.54■□□□□ 0.88
RGP1-201ENST00000378078 CEP89Q96ST8 783 aa20.53■□□□□ 0.88
RGP1-201ENST00000378078 EVA1CP58658 441 aa20.51■□□□□ 0.87
RGP1-201ENST00000378078 SYTL4Q96C24 671 aaPredicted RBP20.51■□□□□ 0.87
RGP1-201ENST00000378078 TCEAL9Q9UHQ7 104 aa20.49■□□□□ 0.87
RGP1-201ENST00000378078 CWC22Q9HCG8 908 aaKnown RBP20.49■□□□□ 0.87
RGP1-201ENST00000378078 CLUAP1Q96AJ1 413 aa20.49■□□□□ 0.87
RGP1-201ENST00000378078 TPM4P67936 248 aa20.48■□□□□ 0.87
RGP1-201ENST00000378078 NGDNQ8NEJ9 315 aaKnown RBP20.48■□□□□ 0.87
RGP1-201ENST00000378078 BCL11BQ9C0K0 894 aaPredicted RBP20.48■□□□□ 0.87
RGP1-201ENST00000378078 NECTIN2Q92692 538 aa20.47■□□□□ 0.87
RGP1-201ENST00000378078 GPATCH3Q96I76 525 aa20.47■□□□□ 0.87
RGP1-201ENST00000378078 CTDP1Q9Y5B0 961 aaPredicted RBP20.47■□□□□ 0.87
RGP1-201ENST00000378078 TRIM34Q9BYJ4 488 aa20.46■□□□□ 0.87
RGP1-201ENST00000378078 DEKP35659 375 aaKnown RBP20.46■□□□□ 0.87
RGP1-201ENST00000378078 TPD52L1Q16890 204 aaPredicted RBP20.45■□□□□ 0.86
RGP1-201ENST00000378078 AMPHP49418 695 aa20.45■□□□□ 0.86
RGP1-201ENST00000378078 CCAR2Q8N163 923 aaKnown RBP20.45■□□□□ 0.86
RGP1-201ENST00000378078 TNNT3P45378 269 aaPredicted RBP20.44■□□□□ 0.86
RGP1-201ENST00000378078 CCNB3Q8WWL7 1395 aa20.44■□□□□ 0.86
RGP1-201ENST00000378078 STK31Q9BXU1 1019 aa20.44■□□□□ 0.86
RGP1-201ENST00000378078 KDM4AO75164 1064 aa20.43■□□□□ 0.86
RGP1-201ENST00000378078 SPAG9O60271 1321 aaKnown RBP20.43■□□□□ 0.86
RGP1-201ENST00000378078 FOSBP53539 338 aa20.43■□□□□ 0.86
RGP1-201ENST00000378078 GOLGA6L1Q8N7Z2 621 aa20.42■□□□□ 0.86
RGP1-201ENST00000378078 SMC4Q9NTJ3 1288 aa20.42■□□□□ 0.86
RGP1-201ENST00000378078 RILPL2Q969X0 211 aa20.42■□□□□ 0.86
RGP1-201ENST00000378078 RRP7AQ9Y3A4 280 aaKnown RBP20.4■□□□□ 0.86
RGP1-201ENST00000378078 SF3A1Q15459 793 aaKnown RBP20.39■□□□□ 0.85
RGP1-201ENST00000378078 ELL2O00472 640 aaPredicted RBP20.38■□□□□ 0.85
RGP1-201ENST00000378078 IPO8O15397 1037 aaKnown RBP20.38■□□□□ 0.85
RGP1-201ENST00000378078 DHX16O60231 1041 aaKnown RBP20.37■□□□□ 0.85
RGP1-201ENST00000378078 MTMR7Q9Y216 660 aa20.37■□□□□ 0.85
RGP1-201ENST00000378078 ROCK2O75116 1388 aaKnown RBP20.37■□□□□ 0.85
RGP1-201ENST00000378078 PCMTD1Q96MG8 357 aaPredicted RBP20.36■□□□□ 0.85
RGP1-201ENST00000378078 PPP1R1BQ9UD71 204 aaPredicted RBP20.36■□□□□ 0.85
RGP1-201ENST00000378078 GBP4Q96PP9 640 aa20.36■□□□□ 0.85
RGP1-201ENST00000378078 H3BQV1 296 aa20.35■□□□□ 0.85
RGP1-201ENST00000378078 FYB1O15117 783 aa20.35■□□□□ 0.85
RGP1-201ENST00000378078 IFFO2Q5TF58 517 aa20.35■□□□□ 0.85
RGP1-201ENST00000378078 CEP162Q5TB80 1403 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms