RNA–Protein interactions for RNA: ENST00000364739.1

RNU4-28P-201, Transcript of RNA, U4 small nuclear 28, pseudogene, humanhuman

BASIC

Gene RNU4-28P, Length 141 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-28P-201ENST00000364739 G3V3G9 751 aa12.55□□□□□ -0.4
RNU4-28P-201ENST00000364739 EMP3P54852 163 aa12.54□□□□□ -0.4
RNU4-28P-201ENST00000364739 SPNS2Q8IVW8 549 aa12.54□□□□□ -0.4
RNU4-28P-201ENST00000364739 BOLA1Q9Y3E2 137 aa12.54□□□□□ -0.4
RNU4-28P-201ENST00000364739 MMRN1Q13201 1228 aa12.51□□□□□ -0.41
RNU4-28P-201ENST00000364739 MICALL2Q8IY33 904 aa12.5□□□□□ -0.41
RNU4-28P-201ENST00000364739 CFAP44Q96MT7 982 aa12.5□□□□□ -0.41
RNU4-28P-201ENST00000364739 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.5□□□□□ -0.41
RNU4-28P-201ENST00000364739 PAXIP1Q6ZW49 1069 aaPredicted RBP12.49□□□□□ -0.41
RNU4-28P-201ENST00000364739 SPRYD3Q8NCJ5 442 aa12.46□□□□□ -0.41
RNU4-28P-201ENST00000364739 HS3ST6Q96QI5 342 aa12.46□□□□□ -0.41
RNU4-28P-201ENST00000364739 FAM205CA6NFA0 338 aa12.43□□□□□ -0.42
RNU4-28P-201ENST00000364739 HOXB3P14651 431 aaPredicted RBP12.43□□□□□ -0.42
RNU4-28P-201ENST00000364739 RYDENQ9NUL5 291 aaKnown RBP12.43□□□□□ -0.42
RNU4-28P-201ENST00000364739 POTEB3A0JP26 581 aa12.41□□□□□ -0.42
RNU4-28P-201ENST00000364739 POTEBQ6S5H4 581 aa12.41□□□□□ -0.42
RNU4-28P-201ENST00000364739 TMEM92Q6UXU6 159 aa12.4□□□□□ -0.42
RNU4-28P-201ENST00000364739 KRTAP3-3Q9BYR6 98 aa12.4□□□□□ -0.42
RNU4-28P-201ENST00000364739 KRTAP3-2Q9BYR7 98 aa12.4□□□□□ -0.42
RNU4-28P-201ENST00000364739 DOK7Q18PE1 504 aa12.39□□□□□ -0.43
RNU4-28P-201ENST00000364739 HOXB1P14653 301 aaPredicted RBP12.38□□□□□ -0.43
RNU4-28P-201ENST00000364739 ZNF710Q8N1W2 664 aa12.38□□□□□ -0.43
RNU4-28P-201ENST00000364739 CADPS2Q86UW7 1296 aa12.33□□□□□ -0.44
RNU4-28P-201ENST00000364739 RIMBP2O15034 1052 aa12.32□□□□□ -0.44
RNU4-28P-201ENST00000364739 C2orf72A6NCS6 295 aa12.29□□□□□ -0.44
RNU4-28P-201ENST00000364739 PLCB2Q00722 1185 aa12.28□□□□□ -0.44
RNU4-28P-201ENST00000364739 ERBB3P21860 1342 aa12.28□□□□□ -0.44
RNU4-28P-201ENST00000364739 ZSWIM6Q9HCJ5 1215 aa12.27□□□□□ -0.45
RNU4-28P-201ENST00000364739 TSHZ2Q9NRE2 1034 aa12.27□□□□□ -0.45
RNU4-28P-201ENST00000364739 TMC2Q8TDI7 906 aa12.25□□□□□ -0.45
RNU4-28P-201ENST00000364739 KIF3CO14782 793 aa12.24□□□□□ -0.45
RNU4-28P-201ENST00000364739 NCKAP5LQ9HCH0 1330 aa12.24□□□□□ -0.45
RNU4-28P-201ENST00000364739 GPHNQ9NQX3 736 aaPredicted RBP12.21□□□□□ -0.45
RNU4-28P-201ENST00000364739 LARP6Q9BRS8 491 aaKnown RBP12.2□□□□□ -0.46
RNU4-28P-201ENST00000364739 CRISPLD2Q9H0B8 497 aa12.2□□□□□ -0.46
RNU4-28P-201ENST00000364739 DSG2Q14126 1118 aa12.19□□□□□ -0.46
RNU4-28P-201ENST00000364739 VARS2Q5ST30 1063 aaKnown RBP12.19□□□□□ -0.46
RNU4-28P-201ENST00000364739 PDE4AP27815 886 aa12.18□□□□□ -0.46
RNU4-28P-201ENST00000364739 GPR153Q6NV75 609 aa12.17□□□□□ -0.46
RNU4-28P-201ENST00000364739 HAP1P54257 671 aaPredicted RBP12.16□□□□□ -0.46
RNU4-28P-201ENST00000364739 FOXK1P85037 733 aa12.14□□□□□ -0.47
RNU4-28P-201ENST00000364739 PLPP6Q8IY26 295 aa12.14□□□□□ -0.47
RNU4-28P-201ENST00000364739 ZNF687Q8N1G0 1237 aa12.14□□□□□ -0.47
RNU4-28P-201ENST00000364739 PPP1R15BQ5SWA1 713 aa12.11□□□□□ -0.47
RNU4-28P-201ENST00000364739 DDX27Q96GQ7 796 aaKnown RBP12.1□□□□□ -0.47
RNU4-28P-201ENST00000364739 RNF166Q96A37 237 aaPredicted RBP12.09□□□□□ -0.47
RNU4-28P-201ENST00000364739 MFSD10Q14728 455 aa12.07□□□□□ -0.48
RNU4-28P-201ENST00000364739 ARSIQ5FYB1 569 aa12.06□□□□□ -0.48
RNU4-28P-201ENST00000364739 KHSRPQ92945 711 aaKnown RBP eCLIP12.06□□□□□ -0.48
RNU4-28P-201ENST00000364739 PTGER2P43116 358 aa12.05□□□□□ -0.48
RNU4-28P-201ENST00000364739 MYT1LQ9UL68 1186 aa12.04□□□□□ -0.48
RNU4-28P-201ENST00000364739 UPF1Q92900 1129 aaKnown RBP eCLIP12.03□□□□□ -0.48
RNU4-28P-201ENST00000364739 ZNF316A6NFI3 1004 aaPredicted RBP12.02□□□□□ -0.49
RNU4-28P-201ENST00000364739 WDR70Q9NW82 654 aa12.01□□□□□ -0.49
RNU4-28P-201ENST00000364739 KDM2AQ9Y2K7 1162 aa12□□□□□ -0.49
RNU4-28P-201ENST00000364739 EMILIN3Q9NT22 766 aa11.99□□□□□ -0.49
RNU4-28P-201ENST00000364739 PCDHGA4Q9Y5G9 962 aa11.99□□□□□ -0.49
RNU4-28P-201ENST00000364739 SLC34A2O95436 690 aa11.98□□□□□ -0.49
RNU4-28P-201ENST00000364739 PTCD2Q8WV60 388 aaKnown RBP11.96□□□□□ -0.49
RNU4-28P-201ENST00000364739 NUDT7P0C024 238 aa11.95□□□□□ -0.5
RNU4-28P-201ENST00000364739 OXER1Q8TDS5 423 aa11.95□□□□□ -0.5
RNU4-28P-201ENST00000364739 CAMK2BQ13554 666 aa11.93□□□□□ -0.5
RNU4-28P-201ENST00000364739 E2F4Q16254 413 aa11.93□□□□□ -0.5
RNU4-28P-201ENST00000364739 PBX2P40425 430 aa11.92□□□□□ -0.5
RNU4-28P-201ENST00000364739 LSM11P83369 360 aaKnown RBP eCLIP11.92□□□□□ -0.5
RNU4-28P-201ENST00000364739 ANKRD13DQ6ZTN6 518 aa11.92□□□□□ -0.5
RNU4-28P-201ENST00000364739 MAP3K9P80192 1104 aa11.9□□□□□ -0.5
RNU4-28P-201ENST00000364739 DPYSL4O14531 572 aa11.89□□□□□ -0.51
RNU4-28P-201ENST00000364739 TBC1D12O60347 775 aa11.89□□□□□ -0.51
RNU4-28P-201ENST00000364739 VSIG10Q8N0Z9 540 aa11.87□□□□□ -0.51
RNU4-28P-201ENST00000364739 KDM4FA0A1W2PPD8 638 aa11.86□□□□□ -0.51
RNU4-28P-201ENST00000364739 LHX6Q9UPM6 363 aa11.86□□□□□ -0.51
RNU4-28P-201ENST00000364739 KCNV2Q8TDN2 545 aa11.85□□□□□ -0.51
RNU4-28P-201ENST00000364739 EVI5O60447 810 aa11.84□□□□□ -0.51
RNU4-28P-201ENST00000364739 PSDA5PKW4 1024 aaPredicted RBP11.81□□□□□ -0.52
RNU4-28P-201ENST00000364739 POTEEQ6S8J3 1075 aa11.81□□□□□ -0.52
RNU4-28P-201ENST00000364739 ANO8Q9HCE9 1232 aaPredicted RBP11.77□□□□□ -0.53
RNU4-28P-201ENST00000364739 AXIN2Q9Y2T1 843 aa11.77□□□□□ -0.53
RNU4-28P-201ENST00000364739 ARHGAP33O14559 1287 aa11.75□□□□□ -0.53
RNU4-28P-201ENST00000364739 ARIH1Q9Y4X5 557 aaPredicted RBP11.74□□□□□ -0.53
RNU4-28P-201ENST00000364739 DDX12PQ92771 950 aa11.73□□□□□ -0.53
RNU4-28P-201ENST00000364739 ARHGEF1Q92888 912 aaKnown RBP11.73□□□□□ -0.53
RNU4-28P-201ENST00000364739 SLC24A1O60721 1099 aa11.72□□□□□ -0.53
RNU4-28P-201ENST00000364739 PDIA6Q15084 440 aa11.72□□□□□ -0.53
RNU4-28P-201ENST00000364739 ZNF454Q8N9F8 522 aa11.72□□□□□ -0.53
RNU4-28P-201ENST00000364739 ADGRD1Q6QNK2 874 aa11.71□□□□□ -0.53
RNU4-28P-201ENST00000364739 P3H3Q8IVL6 736 aa11.71□□□□□ -0.53
RNU4-28P-201ENST00000364739 TK2O00142 265 aa11.69□□□□□ -0.54
RNU4-28P-201ENST00000364739 HCSTQ9UBK5 93 aa11.69□□□□□ -0.54
RNU4-28P-201ENST00000364739 SPDYE16A6NNV3 312 aaPredicted RBP11.68□□□□□ -0.54
RNU4-28P-201ENST00000364739 FOSBP53539 338 aa11.68□□□□□ -0.54
RNU4-28P-201ENST00000364739 PCDHGA10Q9Y5H3 936 aa11.68□□□□□ -0.54
RNU4-28P-201ENST00000364739 GRXCR2A6NFK2 248 aa11.67□□□□□ -0.54
RNU4-28P-201ENST00000364739 SEMA3EO15041 775 aa11.66□□□□□ -0.54
RNU4-28P-201ENST00000364739 MLLT3P42568 568 aaPredicted RBP11.65□□□□□ -0.54
RNU4-28P-201ENST00000364739 PPP4R3BQ5MIZ7 849 aa11.65□□□□□ -0.54
RNU4-28P-201ENST00000364739 JPH4Q96JJ6 628 aa11.65□□□□□ -0.54
RNU4-28P-201ENST00000364739 ADAM33Q9BZ11 813 aa11.63□□□□□ -0.55
RNU4-28P-201ENST00000364739 PLA2G2EQ9NZK7 142 aa11.63□□□□□ -0.55
RNU4-28P-201ENST00000364739 HRO43593 1189 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms