RNA–Protein interactions for RNA: ENST00000361198.9

LDB1-201, Transcript of LIM domain binding 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDB1, Length 2,285 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-201ENST00000361198 ABCC5O15440 1437 aa32.5■■■□□ 2.79
LDB1-201ENST00000361198 PPP1R15AO75807 674 aaPredicted RBP32.49■■■□□ 2.79
LDB1-201ENST00000361198 GPATCH8Q9UKJ3 1502 aaKnown RBP32.46■■■□□ 2.79
LDB1-201ENST00000361198 ATP10BO94823 1461 aa32.45■■■□□ 2.79
LDB1-201ENST00000361198 CFDP1Q9UEE9 299 aaPredicted RBP32.45■■■□□ 2.79
LDB1-201ENST00000361198 ROCK1Q13464 1354 aa32.45■■■□□ 2.79
LDB1-201ENST00000361198 ITSN2Q9NZM3 1697 aa32.45■■■□□ 2.78
LDB1-201ENST00000361198 TONSLQ96HA7 1378 aa32.43■■■□□ 2.78
LDB1-201ENST00000361198 TRIM52Q96A61 297 aa32.43■■■□□ 2.78
LDB1-201ENST00000361198 DENND4BO75064 1496 aaPredicted RBP32.42■■■□□ 2.78
LDB1-201ENST00000361198 CAMSAP2Q08AD1 1489 aa32.41■■■□□ 2.78
LDB1-201ENST00000361198 PLEKHD1A6NEE1 506 aa32.41■■■□□ 2.78
LDB1-201ENST00000361198 PTPRGP23470 1445 aa32.41■■■□□ 2.78
LDB1-201ENST00000361198 ZNF777Q9ULD5 760 aaPredicted RBP32.34■■■□□ 2.77
LDB1-201ENST00000361198 MPHOSPH9Q99550 1183 aa32.33■■■□□ 2.77
LDB1-201ENST00000361198 SHROOM2Q13796 1616 aa32.32■■■□□ 2.76
LDB1-201ENST00000361198 ABCC10Q5T3U5 1492 aa32.31■■■□□ 2.76
LDB1-201ENST00000361198 CDC42BPAQ5VT25 1732 aa32.29■■■□□ 2.76
LDB1-201ENST00000361198 KDM5BQ9UGL1 1544 aa32.25■■■□□ 2.75
LDB1-201ENST00000361198 NCOA1Q15788 1441 aa32.24■■■□□ 2.75
LDB1-201ENST00000361198 CROCC2H7BZ55 1655 aa32.22■■■□□ 2.75
LDB1-201ENST00000361198 ADGBQ8N7X0 1667 aa32.22■■■□□ 2.75
LDB1-201ENST00000361198 FOXD1Q16676 465 aa32.21■■■□□ 2.75
LDB1-201ENST00000361198 ERCC6L2Q5T890 1561 aa32.2■■■□□ 2.74
LDB1-201ENST00000361198 HIRIP3Q9BW71 556 aaPredicted RBP32.19■■■□□ 2.74
LDB1-201ENST00000361198 ADGRL2O95490 1459 aa32.19■■■□□ 2.74
LDB1-201ENST00000361198 DDX10Q13206 875 aaKnown RBP32.12■■■□□ 2.73
LDB1-201ENST00000361198 ANKRD30AQ9BXX3 1397 aa32.12■■■□□ 2.73
LDB1-201ENST00000361198 SLC4A1APQ9BWU0 796 aaKnown RBP32.11■■■□□ 2.73
LDB1-201ENST00000361198 ANKRD30BQ9BXX2 1392 aa32.11■■■□□ 2.73
LDB1-201ENST00000361198 CLASP1Q7Z460 1538 aa32.07■■■□□ 2.72
LDB1-201ENST00000361198 PZPP20742 1482 aa32.06■■■□□ 2.72
LDB1-201ENST00000361198 SHANK2Q9UPX8 1470 aa32.06■■■□□ 2.72
LDB1-201ENST00000361198 ABCC2Q92887 1545 aa32.06■■■□□ 2.72
LDB1-201ENST00000361198 C9orf84Q5VXU9 1444 aa32.05■■■□□ 2.72
LDB1-201ENST00000361198 CDC42BPBQ9Y5S2 1711 aa32.04■■■□□ 2.72
LDB1-201ENST00000361198 L3MBTL2Q969R5 705 aa32.02■■■□□ 2.72
LDB1-201ENST00000361198 ANKRD50Q9ULJ7 1429 aa32.02■■■□□ 2.72
LDB1-201ENST00000361198 RPRD2Q5VT52 1461 aaKnown RBP32.02■■■□□ 2.72
LDB1-201ENST00000361198 HNRNPMP52272 730 aaKnown RBP eCLIP32.02■■■□□ 2.72
LDB1-201ENST00000361198 PREX2Q70Z35 1606 aa32.01■■■□□ 2.72
LDB1-201ENST00000361198 TSPY4P0CV99 314 aa32■■■□□ 2.71
LDB1-201ENST00000361198 TSPY10P0CW01 314 aa32■■■□□ 2.71
LDB1-201ENST00000361198 MBD5Q9P267 1494 aa31.99■■■□□ 2.71
LDB1-201ENST00000361198 ARHGEF5Q12774 1597 aa31.98■■■□□ 2.71
LDB1-201ENST00000361198 SAMD9LQ8IVG5 1584 aa31.98■■■□□ 2.71
LDB1-201ENST00000361198 TTC37Q6PGP7 1564 aa31.95■■■□□ 2.71
LDB1-201ENST00000361198 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.94■■■□□ 2.72e-7■■□□□ 11.5
LDB1-201ENST00000361198 TEX14Q8IWB6 1497 aa31.92■■■□□ 2.7
LDB1-201ENST00000361198 CCDC141Q6ZP82 1450 aa31.9■■■□□ 2.7
LDB1-201ENST00000361198 KIAA1107Q9UPP5 1409 aa31.9■■■□□ 2.7
LDB1-201ENST00000361198 KIF15Q9NS87 1388 aa31.88■■■□□ 2.69
LDB1-201ENST00000361198 PKD2Q13563 968 aa31.87■■■□□ 2.69
LDB1-201ENST00000361198 ARHGAP5Q13017 1502 aa31.87■■■□□ 2.69
LDB1-201ENST00000361198 KCNH8Q96L42 1107 aa31.86■■■□□ 2.69
LDB1-201ENST00000361198 UHRF1BP1LA0JNW5 1464 aa31.85■■■□□ 2.69
LDB1-201ENST00000361198 HSPA5P11021 654 aaKnown RBP31.85■■■□□ 2.69
LDB1-201ENST00000361198 RSPH4AQ5TD94 716 aa31.85■■■□□ 2.69
LDB1-201ENST00000361198 ZCCHC11Q5TAX3 1644 aaKnown RBP31.85■■■□□ 2.69
LDB1-201ENST00000361198 NUP155O75694 1391 aa31.84■■■□□ 2.69
LDB1-201ENST00000361198 SYCP2Q9BX26 1530 aa31.83■■■□□ 2.69
LDB1-201ENST00000361198 NBPF8Q3BBV2 869 aa31.82■■■□□ 2.68
LDB1-201ENST00000361198 MYO5CQ9NQX4 1742 aa31.82■■■□□ 2.68
LDB1-201ENST00000361198 EIF4G2P78344 907 aaKnown RBP eCLIP31.8■■■□□ 2.681e-10■■■□□ 17
LDB1-201ENST00000361198 KDM5DQ9BY66 1539 aa31.78■■■□□ 2.68
LDB1-201ENST00000361198 ANP32CO43423 234 aa31.73■■■□□ 2.67
LDB1-201ENST00000361198 SUPT16HQ9Y5B9 1047 aaKnown RBP31.73■■■□□ 2.67
LDB1-201ENST00000361198 WASHC2AQ641Q2 1341 aa31.72■■■□□ 2.67
LDB1-201ENST00000361198 MAST1Q9Y2H9 1570 aa31.72■■■□□ 2.67
LDB1-201ENST00000361198 PLCH2O75038 1416 aa31.71■■■□□ 2.67
LDB1-201ENST00000361198 PLEKHH2Q8IVE3 1493 aa31.7■■■□□ 2.67
LDB1-201ENST00000361198 ARHGEF12Q9NZN5 1544 aa31.67■■■□□ 2.66
LDB1-201ENST00000361198 CCER2I3L3R5 266 aa31.64■■■□□ 2.66
LDB1-201ENST00000361198 EFCAB2Q5VUJ9 269 aa31.63■■■□□ 2.65
LDB1-201ENST00000361198 FAM135AQ9P2D6 1515 aa31.61■■■□□ 2.65
LDB1-201ENST00000361198 PLXNC1O60486 1568 aa31.6■■■□□ 2.65
LDB1-201ENST00000361198 SPATA31E1Q6ZUB1 1445 aa31.6■■■□□ 2.65
LDB1-201ENST00000361198 C11orf95C9JLR9 678 aaPredicted RBP31.59■■■□□ 2.65
LDB1-201ENST00000361198 ABCC1P33527 1531 aa31.56■■■□□ 2.64
LDB1-201ENST00000361198 UNC13BO14795 1591 aa31.55■■■□□ 2.64
LDB1-201ENST00000361198 ZNF326Q5BKZ1 582 aaKnown RBP31.54■■■□□ 2.64
LDB1-201ENST00000361198 CCDC7Q96M83 1385 aa31.53■■■□□ 2.64
LDB1-201ENST00000361198 TRAPPC8Q9Y2L5 1435 aa31.52■■■□□ 2.64
LDB1-201ENST00000361198 WDR7Q9Y4E6 1490 aa31.51■■■□□ 2.64
LDB1-201ENST00000361198 DUOX2Q9NRD8 1548 aa31.51■■■□□ 2.63
LDB1-201ENST00000361198 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.49■■■□□ 2.631e-6■■■□□ 17.7
LDB1-201ENST00000361198 UHRF1BP1Q6BDS2 1440 aa31.48■■■□□ 2.63
LDB1-201ENST00000361198 ARAP3Q8WWN8 1544 aa31.48■■■□□ 2.63
LDB1-201ENST00000361198 CNTLNQ9NXG0 1405 aa31.48■■■□□ 2.63
LDB1-201ENST00000361198 ERBINQ96RT1 1412 aa31.45■■■□□ 2.62
LDB1-201ENST00000361198 POLR1AO95602 1720 aaPredicted RBP31.43■■■□□ 2.62
LDB1-201ENST00000361198 IQGAP3Q86VI3 1631 aa31.43■■■□□ 2.62
LDB1-201ENST00000361198 KIF7Q2M1P5 1343 aa31.43■■■□□ 2.62
LDB1-201ENST00000361198 USP47Q96K76 1375 aa31.42■■■□□ 2.62
LDB1-201ENST00000361198 OSCARQ8IYS5 282 aa31.41■■■□□ 2.62
LDB1-201ENST00000361198 AFAP1Q8N556 730 aa31.4■■■□□ 2.62
LDB1-201ENST00000361198 MAGI2Q86UL8 1455 aa31.4■■■□□ 2.62
LDB1-201ENST00000361198 RALGAPBQ86X10 1494 aa31.4■■■□□ 2.62
LDB1-201ENST00000361198 DCAF11Q8TEB1 546 aa31.4■■■□□ 2.62
LDB1-201ENST00000361198 KDM2AQ9Y2K7 1162 aa31.4■■■□□ 2.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms