RNA–Protein interactions for RNA: ENST00000352393.8

CPNE1-202, Transcript of copine 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE1, Length 2,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-202ENST00000352393 ANKRD30BQ9BXX2 1392 aa34.12■■■■□ 3.05
CPNE1-202ENST00000352393 ABCC5O15440 1437 aa34.12■■■■□ 3.05
CPNE1-202ENST00000352393 POLR1AO95602 1720 aaPredicted RBP34.12■■■■□ 3.05
CPNE1-202ENST00000352393 RAPGEF6Q8TEU7 1601 aa34.11■■■■□ 3.05
CPNE1-202ENST00000352393 NUP153P49790 1475 aaKnown RBP34.11■■■■□ 3.05
CPNE1-202ENST00000352393 HNRNPUQ00839 825 aaKnown RBP eCLIP34.11■■■■□ 3.05
CPNE1-202ENST00000352393 KIAA0586Q9BVV6 1533 aa34.11■■■■□ 3.05
CPNE1-202ENST00000352393 ANP32EQ9BTT0 268 aa34.1■■■■□ 3.05
CPNE1-202ENST00000352393 IFT140Q96RY7 1462 aa34.1■■■■□ 3.05
CPNE1-202ENST00000352393 CCDC7Q96M83 1385 aa34.07■■■■□ 3.04
CPNE1-202ENST00000352393 ARID3CA6NKF2 412 aa34.05■■■■□ 3.04
CPNE1-202ENST00000352393 ZNF608Q9ULD9 1512 aaPredicted RBP34.05■■■■□ 3.04
CPNE1-202ENST00000352393 FOXD1Q16676 465 aa34.04■■■■□ 3.04
CPNE1-202ENST00000352393 RBM19Q9Y4C8 960 aaKnown RBP33.99■■■■□ 3.03
CPNE1-202ENST00000352393 ADGBQ8N7X0 1667 aa33.98■■■■□ 3.03
CPNE1-202ENST00000352393 C11orf95C9JLR9 678 aaPredicted RBP33.98■■■■□ 3.03
CPNE1-202ENST00000352393 SPATA31E1Q6ZUB1 1445 aa33.97■■■■□ 3.03
CPNE1-202ENST00000352393 ITSN2Q9NZM3 1697 aa33.97■■■■□ 3.03
CPNE1-202ENST00000352393 NBPF8Q3BBV2 869 aa33.96■■■■□ 3.03
CPNE1-202ENST00000352393 GRIN2AQ12879 1464 aa33.96■■■■□ 3.03
CPNE1-202ENST00000352393 ZNF644Q9H582 1327 aaPredicted RBP33.94■■■■□ 3.02
CPNE1-202ENST00000352393 PZPP20742 1482 aa33.93■■■■□ 3.02
CPNE1-202ENST00000352393 PRKRIP1Q9H875 184 aaPredicted RBP33.92■■■■□ 3.02
CPNE1-202ENST00000352393 CROCC2H7BZ55 1655 aa33.92■■■■□ 3.02
CPNE1-202ENST00000352393 EIF4G3O43432 1585 aaKnown RBP33.91■■■■□ 3.02
CPNE1-202ENST00000352393 CCDC184Q52MB2 194 aa33.91■■■■□ 3.02
CPNE1-202ENST00000352393 ADCY10Q96PN6 1610 aa33.91■■■■□ 3.02
CPNE1-202ENST00000352393 CAMSAP2Q08AD1 1489 aa33.91■■■■□ 3.02
CPNE1-202ENST00000352393 TROQ12816 1431 aaPredicted RBP33.89■■■■□ 3.02
CPNE1-202ENST00000352393 MBD5Q9P267 1494 aa33.87■■■■□ 3.01
CPNE1-202ENST00000352393 SLC4A1APQ9BWU0 796 aaKnown RBP33.86■■■■□ 3.01
CPNE1-202ENST00000352393 CDK11AQ9UQ88 783 aaPredicted RBP33.86■■■■□ 3.01
CPNE1-202ENST00000352393 ADGRL2O95490 1459 aa33.85■■■■□ 3.01
CPNE1-202ENST00000352393 KIF7Q2M1P5 1343 aa33.84■■■■□ 3.01
CPNE1-202ENST00000352393 PRG4Q92954 1404 aaPredicted RBP33.83■■■■□ 3.01
CPNE1-202ENST00000352393 ERCC6Q03468 1493 aa33.83■■■■□ 3.01
CPNE1-202ENST00000352393 ERICH6BQ5W0A0 696 aa33.82■■■■□ 3
CPNE1-202ENST00000352393 KIF14Q15058 1648 aa33.81■■■■□ 3
CPNE1-202ENST00000352393 GPATCH8Q9UKJ3 1502 aaKnown RBP33.8■■■■□ 3
CPNE1-202ENST00000352393 IRX6P78412 446 aaPredicted RBP33.77■■■■□ 3
CPNE1-202ENST00000352393 ZBED9Q6R2W3 1325 aa33.76■■■■□ 3
CPNE1-202ENST00000352393 MRS2Q9HD23 443 aa33.76■■■■□ 3
CPNE1-202ENST00000352393 CEP170Q5SW79 1584 aa33.76■■■□□ 2.99
CPNE1-202ENST00000352393 KIAA1107Q9UPP5 1409 aa33.76■■■□□ 2.99
CPNE1-202ENST00000352393 PLB1Q6P1J6 1458 aa33.73■■■□□ 2.99
CPNE1-202ENST00000352393 MAGI1Q96QZ7 1491 aaPredicted RBP33.73■■■□□ 2.99
CPNE1-202ENST00000352393 BCORL1Q5H9F3 1711 aa33.71■■■□□ 2.99
CPNE1-202ENST00000352393 CFDP1Q9UEE9 299 aaPredicted RBP33.71■■■□□ 2.99
CPNE1-202ENST00000352393 FAM9BQ8IZU0 186 aa33.7■■■□□ 2.98
CPNE1-202ENST00000352393 KDM5CP41229 1560 aa33.67■■■□□ 2.98
CPNE1-202ENST00000352393 DHX29Q7Z478 1369 aaKnown RBP33.65■■■□□ 2.98
CPNE1-202ENST00000352393 PPP4R2Q9NY27 417 aa33.65■■■□□ 2.98
CPNE1-202ENST00000352393 SYNJ2O15056 1496 aa33.64■■■□□ 2.98
CPNE1-202ENST00000352393 CDC42BPAQ5VT25 1732 aa33.64■■■□□ 2.98
CPNE1-202ENST00000352393 ANKRD30AQ9BXX3 1397 aa33.63■■■□□ 2.97
CPNE1-202ENST00000352393 USP47Q96K76 1375 aa33.62■■■□□ 2.97
CPNE1-202ENST00000352393 SHANK2Q9UPX8 1470 aa33.6■■■□□ 2.97
CPNE1-202ENST00000352393 FANCIQ9NVI1 1328 aa33.59■■■□□ 2.97
CPNE1-202ENST00000352393 ANKRD50Q9ULJ7 1429 aa33.57■■■□□ 2.97
CPNE1-202ENST00000352393 UHRF1BP1Q6BDS2 1440 aa33.57■■■□□ 2.96
CPNE1-202ENST00000352393 KDM5DQ9BY66 1539 aa33.55■■■□□ 2.96
CPNE1-202ENST00000352393 NUP160Q12769 1436 aa33.55■■■□□ 2.96
CPNE1-202ENST00000352393 CARMIL2Q6F5E8 1435 aa33.55■■■□□ 2.96
CPNE1-202ENST00000352393 RALGAPBQ86X10 1494 aa33.55■■■□□ 2.96
CPNE1-202ENST00000352393 PKD2Q13563 968 aa33.55■■■□□ 2.96
CPNE1-202ENST00000352393 ABCC10Q5T3U5 1492 aa33.54■■■□□ 2.96
CPNE1-202ENST00000352393 ARHGEF12Q9NZN5 1544 aa33.54■■■□□ 2.96
CPNE1-202ENST00000352393 ABCA8O94911 1581 aa33.54■■■□□ 2.96
CPNE1-202ENST00000352393 MSH5O43196 834 aa33.53■■■□□ 2.96
CPNE1-202ENST00000352393 ARID4BQ4LE39 1312 aaPredicted RBP33.53■■■□□ 2.96
CPNE1-202ENST00000352393 ZNF777Q9ULD5 760 aaPredicted RBP33.52■■■□□ 2.96
CPNE1-202ENST00000352393 SMG6Q86US8 1419 aaKnown RBP33.49■■■□□ 2.95
CPNE1-202ENST00000352393 CHMP7Q8WUX9 453 aaPredicted RBP33.48■■■□□ 2.95
CPNE1-202ENST00000352393 C9orf84Q5VXU9 1444 aa33.48■■■□□ 2.95
CPNE1-202ENST00000352393 ROCK2O75116 1388 aaKnown RBP33.43■■■□□ 2.94
CPNE1-202ENST00000352393 ZNF326Q5BKZ1 582 aaKnown RBP33.42■■■□□ 2.94
CPNE1-202ENST00000352393 ARHGEF5Q12774 1597 aa33.4■■■□□ 2.94
CPNE1-202ENST00000352393 ATP10BO94823 1461 aa33.4■■■□□ 2.94
CPNE1-202ENST00000352393 PTPRGP23470 1445 aa33.4■■■□□ 2.94
CPNE1-202ENST00000352393 JPH4Q96JJ6 628 aa33.4■■■□□ 2.94
CPNE1-202ENST00000352393 NUP155O75694 1391 aa33.39■■■□□ 2.94
CPNE1-202ENST00000352393 B4GALNT3Q6L9W6 998 aa33.37■■■□□ 2.93
CPNE1-202ENST00000352393 E9PCH4 1651 aa33.37■■■□□ 2.93
CPNE1-202ENST00000352393 PLEKHD1A6NEE1 506 aa33.34■■■□□ 2.93
CPNE1-202ENST00000352393 RNF123Q5XPI4 1314 aa33.33■■■□□ 2.93
CPNE1-202ENST00000352393 NUDCQ9Y266 331 aa33.33■■■□□ 2.93
CPNE1-202ENST00000352393 POLR3GLQ9BT43 218 aa33.31■■■□□ 2.92
CPNE1-202ENST00000352393 KIF15Q9NS87 1388 aa33.29■■■□□ 2.92
CPNE1-202ENST00000352393 FBLN2P98095 1184 aa33.28■■■□□ 2.92
CPNE1-202ENST00000352393 CARD11Q9BXL7 1154 aa33.28■■■□□ 2.92
CPNE1-202ENST00000352393 PNISRQ8TF01 805 aaKnown RBP33.26■■■□□ 2.91
CPNE1-202ENST00000352393 PREX2Q70Z35 1606 aa33.25■■■□□ 2.91
CPNE1-202ENST00000352393 SAMD9LQ8IVG5 1584 aa33.24■■■□□ 2.91
CPNE1-202ENST00000352393 CDC42BPBQ9Y5S2 1711 aa33.23■■■□□ 2.91
CPNE1-202ENST00000352393 TSPY4P0CV99 314 aa33.23■■■□□ 2.91
CPNE1-202ENST00000352393 TSPY10P0CW01 314 aa33.23■■■□□ 2.91
CPNE1-202ENST00000352393 LRPPRCP42704 1394 aaKnown RBP33.22■■■□□ 2.91
CPNE1-202ENST00000352393 KTN1Q86UP2 1357 aaKnown RBP33.22■■■□□ 2.91
CPNE1-202ENST00000352393 FAM135AQ9P2D6 1515 aa33.21■■■□□ 2.91
CPNE1-202ENST00000352393 CCDC141Q6ZP82 1450 aa33.21■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms