RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 KIF15Q9NS87 1388 aa9.24□□□□□ -0.93
SF3B1-201ENST00000335508 CFAP53Q96M91 514 aa9.23□□□□□ -0.93
SF3B1-201ENST00000335508 ANKRD50Q9ULJ7 1429 aa9.23□□□□□ -0.93
SF3B1-201ENST00000335508 L3MBTL2Q969R5 705 aa9.23□□□□□ -0.93
SF3B1-201ENST00000335508 MAP3K1Q13233 1512 aa9.23□□□□□ -0.93
SF3B1-201ENST00000335508 NCOA2Q15596 1464 aa9.22□□□□□ -0.93
SF3B1-201ENST00000335508 VGFO15240 615 aaPredicted RBP9.22□□□□□ -0.93
SF3B1-201ENST00000335508 PRKCSHP14314 528 aaPredicted RBP9.22□□□□□ -0.93
SF3B1-201ENST00000335508 RRBP1Q9P2E9 1410 aaKnown RBP9.21□□□□□ -0.93
SF3B1-201ENST00000335508 MLECQ14165 292 aa9.21□□□□□ -0.94
SF3B1-201ENST00000335508 HNRNPUQ00839 825 aaKnown RBP eCLIP9.21□□□□□ -0.94
SF3B1-201ENST00000335508 WDR43Q15061 677 aaKnown RBP eCLIP9.21□□□□□ -0.942e-8■■□□□ 13.5
SF3B1-201ENST00000335508 CCDC144AA2RUR9 1427 aa9.2□□□□□ -0.94
SF3B1-201ENST00000335508 DHX57Q6P158 1386 aaKnown RBP9.2□□□□□ -0.94
SF3B1-201ENST00000335508 ZNF608Q9ULD9 1512 aaPredicted RBP9.2□□□□□ -0.94
SF3B1-201ENST00000335508 PLPPR3Q6T4P5 718 aa9.19□□□□□ -0.94
SF3B1-201ENST00000335508 C14orf37Q86TY3 774 aa9.19□□□□□ -0.94
SF3B1-201ENST00000335508 AFAP1Q8N556 730 aa9.19□□□□□ -0.94
SF3B1-201ENST00000335508 EID1Q9Y6B2 187 aa9.18□□□□□ -0.94
SF3B1-201ENST00000335508 NUDCQ9Y266 331 aa9.18□□□□□ -0.94
SF3B1-201ENST00000335508 ZBTB47Q9UFB7 747 aaPredicted RBP9.17□□□□□ -0.94
SF3B1-201ENST00000335508 HFM1A2PYH4 1435 aa9.17□□□□□ -0.94
SF3B1-201ENST00000335508 IQGAP2Q13576 1575 aa9.17□□□□□ -0.94
SF3B1-201ENST00000335508 ZNF644Q9H582 1327 aaPredicted RBP9.17□□□□□ -0.94
SF3B1-201ENST00000335508 ROCK2O75116 1388 aaKnown RBP9.17□□□□□ -0.94
SF3B1-201ENST00000335508 SLC52A1Q9NWF4 448 aa9.16□□□□□ -0.94
SF3B1-201ENST00000335508 EIF5BO60841 1220 aaKnown RBP9.16□□□□□ -0.94
SF3B1-201ENST00000335508 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.16□□□□□ -0.94
SF3B1-201ENST00000335508 CUL7Q14999 1698 aa9.16□□□□□ -0.94
SF3B1-201ENST00000335508 EPRSP07814 1512 aaKnown RBP9.16□□□□□ -0.94
SF3B1-201ENST00000335508 EIF3AQ14152 1382 aaKnown RBP9.16□□□□□ -0.94
SF3B1-201ENST00000335508 UNC13AQ9UPW8 1703 aa9.16□□□□□ -0.94
SF3B1-201ENST00000335508 CCER2I3L3R5 266 aa9.15□□□□□ -0.94
SF3B1-201ENST00000335508 FAM9BQ8IZU0 186 aa9.14□□□□□ -0.95
SF3B1-201ENST00000335508 DAXXQ9UER7 740 aaPredicted RBP9.14□□□□□ -0.95
SF3B1-201ENST00000335508 ROCK1Q13464 1354 aa9.14□□□□□ -0.95
SF3B1-201ENST00000335508 BIVM-ERCC5R4GMW8 1640 aa9.14□□□□□ -0.95
SF3B1-201ENST00000335508 EHBP1L1Q8N3D4 1523 aa9.14□□□□□ -0.95
SF3B1-201ENST00000335508 CANXP27824 592 aaKnown RBP9.14□□□□□ -0.95
SF3B1-201ENST00000335508 HAP1P54257 671 aaPredicted RBP9.13□□□□□ -0.95
SF3B1-201ENST00000335508 HIRIP3Q9BW71 556 aaPredicted RBP9.13□□□□□ -0.95
SF3B1-201ENST00000335508 MIER1Q8N108 512 aa9.12□□□□□ -0.95
SF3B1-201ENST00000335508 HSPA5P11021 654 aaKnown RBP9.11□□□□□ -0.95
SF3B1-201ENST00000335508 NUP160Q12769 1436 aa9.11□□□□□ -0.95
SF3B1-201ENST00000335508 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.11□□□□□ -0.95
SF3B1-201ENST00000335508 TERF2IPQ9NYB0 399 aa9.11□□□□□ -0.95
SF3B1-201ENST00000335508 FOXD1Q16676 465 aa9.11□□□□□ -0.95
SF3B1-201ENST00000335508 PPP6R1Q9UPN7 881 aa9.11□□□□□ -0.95
SF3B1-201ENST00000335508 SCAPERQ9BY12 1400 aa9.11□□□□□ -0.95
SF3B1-201ENST00000335508 PNNQ9H307 717 aaKnown RBP9.1□□□□□ -0.95
SF3B1-201ENST00000335508 AKNAQ7Z591 1439 aa9.1□□□□□ -0.95
SF3B1-201ENST00000335508 SRPK2P78362 688 aaKnown RBP9.1□□□□□ -0.95
SF3B1-201ENST00000335508 HDGFL2Q7Z4V5 671 aaPredicted RBP9.1□□□□□ -0.95
SF3B1-201ENST00000335508 TIAM1Q13009 1591 aa9.1□□□□□ -0.95
SF3B1-201ENST00000335508 RALBP1Q15311 655 aa9.09□□□□□ -0.95
SF3B1-201ENST00000335508 PLB1Q6P1J6 1458 aa9.09□□□□□ -0.95
SF3B1-201ENST00000335508 C9orf84Q5VXU9 1444 aa9.09□□□□□ -0.95
SF3B1-201ENST00000335508 CHMP4AQ9BY43 222 aa9.09□□□□□ -0.95
SF3B1-201ENST00000335508 NLRP13Q86W25 1043 aa9.08□□□□□ -0.96
SF3B1-201ENST00000335508 HECW1Q76N89 1606 aa9.08□□□□□ -0.96
SF3B1-201ENST00000335508 NPM2Q86SE8 214 aaKnown RBP9.08□□□□□ -0.96
SF3B1-201ENST00000335508 NGEFQ8N5V2 710 aa9.07□□□□□ -0.96
SF3B1-201ENST00000335508 CD109Q6YHK3 1445 aa9.07□□□□□ -0.96
SF3B1-201ENST00000335508 POGZQ7Z3K3 1410 aa9.06□□□□□ -0.96
SF3B1-201ENST00000335508 MAPK8IP3Q9UPT6 1336 aa9.06□□□□□ -0.96
SF3B1-201ENST00000335508 GTF3C3Q9Y5Q9 886 aa9.06□□□□□ -0.96
SF3B1-201ENST00000335508 ANKRD30BQ9BXX2 1392 aa9.06□□□□□ -0.96
SF3B1-201ENST00000335508 WDR62O43379 1518 aa9.06□□□□□ -0.96
SF3B1-201ENST00000335508 RPGRIP1LQ68CZ1 1315 aa9.06□□□□□ -0.96
SF3B1-201ENST00000335508 ST20-MTHFSA0A0A6YYL1 179 aa9.05□□□□□ -0.96
SF3B1-201ENST00000335508 NAIPQ13075 1403 aa9.05□□□□□ -0.96
SF3B1-201ENST00000335508 NCOA1Q15788 1441 aa9.05□□□□□ -0.96
SF3B1-201ENST00000335508 CCDC141Q6ZP82 1450 aa9.05□□□□□ -0.96
SF3B1-201ENST00000335508 ARHGAP5Q13017 1502 aa9.05□□□□□ -0.96
SF3B1-201ENST00000335508 UGGT2Q9NYU1 1516 aa9.04□□□□□ -0.96
SF3B1-201ENST00000335508 KTN1Q86UP2 1357 aaKnown RBP9.04□□□□□ -0.96
SF3B1-201ENST00000335508 MORC1Q86VD1 984 aa9.04□□□□□ -0.96
SF3B1-201ENST00000335508 WASHC2AQ641Q2 1341 aa9.04□□□□□ -0.96
SF3B1-201ENST00000335508 RAPGEF3O95398 923 aa9.03□□□□□ -0.96
SF3B1-201ENST00000335508 THOC2Q8NI27 1593 aaKnown RBP9.03□□□□□ -0.96
SF3B1-201ENST00000335508 KIAA1107Q9UPP5 1409 aa9.03□□□□□ -0.96
SF3B1-201ENST00000335508 THEMISQ8N1K5 641 aaPredicted RBP9.03□□□□□ -0.96
SF3B1-201ENST00000335508 CHMP4BQ9H444 224 aaKnown RBP9.03□□□□□ -0.96
SF3B1-201ENST00000335508 WDR97A6NE52 1622 aa9.02□□□□□ -0.97
SF3B1-201ENST00000335508 MS4A1P11836 297 aa9.02□□□□□ -0.97
SF3B1-201ENST00000335508 STK26Q9P289 416 aa9.02□□□□□ -0.97
SF3B1-201ENST00000335508 EVC2Q86UK5 1308 aa9.02□□□□□ -0.97
SF3B1-201ENST00000335508 DAPK1P53355 1430 aa9.02□□□□□ -0.97
SF3B1-201ENST00000335508 CENPJQ9HC77 1338 aaPredicted RBP9.02□□□□□ -0.97
SF3B1-201ENST00000335508 USP47Q96K76 1375 aa9.01□□□□□ -0.97
SF3B1-201ENST00000335508 ATP10BO94823 1461 aa9□□□□□ -0.97
SF3B1-201ENST00000335508 TRAK1Q9UPV9 953 aa8.99□□□□□ -0.97
SF3B1-201ENST00000335508 PLCH2O75038 1416 aa8.99□□□□□ -0.97
SF3B1-201ENST00000335508 CALD1Q05682 793 aaKnown RBP8.99□□□□□ -0.97
SF3B1-201ENST00000335508 LMOD2Q6P5Q4 547 aa8.99□□□□□ -0.97
SF3B1-201ENST00000335508 DENND4BO75064 1496 aaPredicted RBP8.99□□□□□ -0.97
SF3B1-201ENST00000335508 PDE3BQ13370 1112 aa8.99□□□□□ -0.97
SF3B1-201ENST00000335508 DHX29Q7Z478 1369 aaKnown RBP8.99□□□□□ -0.97
SF3B1-201ENST00000335508 PPM1GO15355 546 aaPredicted RBP8.98□□□□□ -0.97
SF3B1-201ENST00000335508 SAFB2Q14151 953 aaKnown RBP eCLIP8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms