RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 NWD1Q149M9 1564 aa3.75□□□□□ -1.81
LINC00643-201ENST00000334389 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.75□□□□□ -1.81
LINC00643-201ENST00000334389 PLXNC1O60486 1568 aa3.75□□□□□ -1.81
LINC00643-201ENST00000334389 FGD5Q6ZNL6 1462 aa3.75□□□□□ -1.81
LINC00643-201ENST00000334389 SHPRHQ149N8 1683 aa3.74□□□□□ -1.81
LINC00643-201ENST00000334389 HECW1Q76N89 1606 aa3.74□□□□□ -1.81
LINC00643-201ENST00000334389 EIF2AK4Q9P2K8 1649 aaKnown RBP3.73□□□□□ -1.81
LINC00643-201ENST00000334389 ABCC3O15438 1527 aa3.73□□□□□ -1.81
LINC00643-201ENST00000334389 KIF21BO75037 1637 aa3.73□□□□□ -1.81
LINC00643-201ENST00000334389 ADGBQ8N7X0 1667 aa3.73□□□□□ -1.81
LINC00643-201ENST00000334389 ITSN2Q9NZM3 1697 aa3.72□□□□□ -1.81
LINC00643-201ENST00000334389 ALKQ9UM73 1620 aa3.72□□□□□ -1.81
LINC00643-201ENST00000334389 MED14O60244 1454 aa3.72□□□□□ -1.81
LINC00643-201ENST00000334389 PRAG1Q86YV5 1406 aa3.71□□□□□ -1.81
LINC00643-201ENST00000334389 MADDQ8WXG6 1647 aa3.71□□□□□ -1.82
LINC00643-201ENST00000334389 MED1Q15648 1581 aaPredicted RBP3.71□□□□□ -1.82
LINC00643-201ENST00000334389 CDK13Q14004 1512 aaKnown RBP3.71□□□□□ -1.82
LINC00643-201ENST00000334389 C3P01024 1663 aa3.7□□□□□ -1.82
LINC00643-201ENST00000334389 FANCAO15360 1455 aa3.7□□□□□ -1.82
LINC00643-201ENST00000334389 GOLGA3Q08378 1498 aa3.7□□□□□ -1.82
LINC00643-201ENST00000334389 SOCS7O14512 581 aa3.7□□□□□ -1.82
LINC00643-201ENST00000334389 KDM5DQ9BY66 1539 aa3.7□□□□□ -1.82
LINC00643-201ENST00000334389 NCOA2Q15596 1464 aa3.7□□□□□ -1.82
LINC00643-201ENST00000334389 LRRC9Q6ZRR7 1453 aa3.7□□□□□ -1.82
LINC00643-201ENST00000334389 MROH1Q8NDA8 1641 aa3.7□□□□□ -1.82
LINC00643-201ENST00000334389 MYO3AQ8NEV4 1616 aa3.7□□□□□ -1.82
LINC00643-201ENST00000334389 PTPRMP28827 1452 aa3.69□□□□□ -1.82
LINC00643-201ENST00000334389 UNC13BO14795 1591 aa3.69□□□□□ -1.82
LINC00643-201ENST00000334389 SETD1BQ9UPS6 1966 aaKnown RBP3.69□□□□□ -1.82
LINC00643-201ENST00000334389 CNTLNQ9NXG0 1405 aa3.69□□□□□ -1.82
LINC00643-201ENST00000334389 TCOF1Q13428 1488 aaKnown RBP3.68□□□□□ -1.82
LINC00643-201ENST00000334389 NEXMIFQ5QGS0 1516 aa3.68□□□□□ -1.82
LINC00643-201ENST00000334389 VWDEQ8N2E2 1590 aa3.68□□□□□ -1.82
LINC00643-201ENST00000334389 COL22A1Q8NFW1 1626 aaPredicted RBP3.68□□□□□ -1.82
LINC00643-201ENST00000334389 RIMS1Q86UR5 1692 aaKnown RBP3.68□□□□□ -1.82
LINC00643-201ENST00000334389 QSER1Q2KHR3 1735 aa3.68□□□□□ -1.82
LINC00643-201ENST00000334389 MYO5CQ9NQX4 1742 aa3.68□□□□□ -1.82
LINC00643-201ENST00000334389 SOGA1O94964 1423 aa3.68□□□□□ -1.82
LINC00643-201ENST00000334389 MAST1Q9Y2H9 1570 aa3.67□□□□□ -1.82
LINC00643-201ENST00000334389 FGD6Q6ZV73 1430 aa3.67□□□□□ -1.82
LINC00643-201ENST00000334389 NCOA3Q9Y6Q9 1424 aa3.67□□□□□ -1.82
LINC00643-201ENST00000334389 DISP1Q96F81 1524 aa3.67□□□□□ -1.82
LINC00643-201ENST00000334389 DIP2AQ14689 1571 aa3.66□□□□□ -1.82
LINC00643-201ENST00000334389 INO80Q9ULG1 1556 aaPredicted RBP3.66□□□□□ -1.82
LINC00643-201ENST00000334389 AKT1S1Q96B36 256 aa3.66□□□□□ -1.82
LINC00643-201ENST00000334389 ABCA6Q8N139 1617 aa3.66□□□□□ -1.82
LINC00643-201ENST00000334389 FXR2P51116 673 aaKnown RBP eCLIP3.65□□□□□ -1.82
LINC00643-201ENST00000334389 SIGLEC1Q9BZZ2 1709 aa3.65□□□□□ -1.82
LINC00643-201ENST00000334389 MARF1Q9Y4F3 1742 aaKnown RBP3.65□□□□□ -1.83
LINC00643-201ENST00000334389 HAX1O00165 279 aa3.65□□□□□ -1.83
LINC00643-201ENST00000334389 CNKSR2Q8WXI2 1034 aa3.65□□□□□ -1.83
LINC00643-201ENST00000334389 PREX2Q70Z35 1606 aa3.65□□□□□ -1.83
LINC00643-201ENST00000334389 SUPT6HQ7KZ85 1726 aaKnown RBP3.65□□□□□ -1.83
LINC00643-201ENST00000334389 ZFYVE16Q7Z3T8 1539 aa3.65□□□□□ -1.83
LINC00643-201ENST00000334389 PIP4P2Q8N4L2 257 aa3.65□□□□□ -1.83
LINC00643-201ENST00000334389 XIRP1Q702N8 1843 aaKnown RBP3.64□□□□□ -1.83
LINC00643-201ENST00000334389 RAD54L2Q9Y4B4 1467 aa3.64□□□□□ -1.83
LINC00643-201ENST00000334389 ARHGAP23Q9P227 1491 aa3.64□□□□□ -1.83
LINC00643-201ENST00000334389 AHDC1Q5TGY3 1603 aaPredicted RBP3.64□□□□□ -1.83
LINC00643-201ENST00000334389 GRWD1Q9BQ67 446 aaKnown RBP eCLIP3.64□□□□□ -1.83
LINC00643-201ENST00000334389 TNIKQ9UKE5 1360 aa3.64□□□□□ -1.83
LINC00643-201ENST00000334389 MLH3Q9UHC1 1453 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 POTEMA6NI47 508 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 ATP10BO94823 1461 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 NCOA1Q15788 1441 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 CD109Q6YHK3 1445 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 UACAQ9BZF9 1416 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 UGGT1Q9NYU2 1555 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 RAPGEF2Q9Y4G8 1499 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 RAPGEF6Q8TEU7 1601 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 NEURL4Q96JN8 1562 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 WRNQ14191 1432 aaPredicted RBP eCLIP3.63□□□□□ -1.83
LINC00643-201ENST00000334389 POGZQ7Z3K3 1410 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 KDM4FA0A1W2PPD8 638 aa3.63□□□□□ -1.83
LINC00643-201ENST00000334389 DNMT1P26358 1616 aaKnown RBP3.62□□□□□ -1.83
LINC00643-201ENST00000334389 DIP2CQ9Y2E4 1556 aa3.62□□□□□ -1.83
LINC00643-201ENST00000334389 ATP7AQ04656 1500 aa3.62□□□□□ -1.83
LINC00643-201ENST00000334389 CARMIL2Q6F5E8 1435 aa3.61□□□□□ -1.83
LINC00643-201ENST00000334389 ZNF219Q9P2Y4 722 aaPredicted RBP3.61□□□□□ -1.83
LINC00643-201ENST00000334389 IQGAP3Q86VI3 1631 aa3.6□□□□□ -1.83
LINC00643-201ENST00000334389 C9orf84Q5VXU9 1444 aa3.6□□□□□ -1.83
LINC00643-201ENST00000334389 ASXL2Q76L83 1435 aa3.6□□□□□ -1.83
LINC00643-201ENST00000334389 YEATS2Q9ULM3 1422 aa3.6□□□□□ -1.83
LINC00643-201ENST00000334389 POTEGQ6S5H5 508 aa3.6□□□□□ -1.83
LINC00643-201ENST00000334389 ILDR1Q86SU0 546 aaPredicted RBP3.6□□□□□ -1.83
LINC00643-201ENST00000334389 LRP6O75581 1613 aa3.59□□□□□ -1.83
LINC00643-201ENST00000334389 CEP170BQ9Y4F5 1589 aaPredicted RBP3.59□□□□□ -1.84
LINC00643-201ENST00000334389 IQGAP1P46940 1657 aa3.59□□□□□ -1.84
LINC00643-201ENST00000334389 CAPN15O75808 1086 aa3.59□□□□□ -1.84
LINC00643-201ENST00000334389 SLIT1O75093 1534 aa3.58□□□□□ -1.84
LINC00643-201ENST00000334389 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP3.58□□□□□ -1.84
LINC00643-201ENST00000334389 AKNAQ7Z591 1439 aa3.58□□□□□ -1.84
LINC00643-201ENST00000334389 C19orf67A6NJJ6 358 aa3.58□□□□□ -1.84
LINC00643-201ENST00000334389 PRG4Q92954 1404 aaPredicted RBP3.58□□□□□ -1.84
LINC00643-201ENST00000334389 RREB1Q92766 1687 aa3.58□□□□□ -1.84
LINC00643-201ENST00000334389 EFCAB6Q5THR3 1501 aa3.57□□□□□ -1.84
LINC00643-201ENST00000334389 TET3O43151 1660 aa3.57□□□□□ -1.84
LINC00643-201ENST00000334389 TIAM1Q13009 1591 aa3.57□□□□□ -1.84
LINC00643-201ENST00000334389 LMTK2Q8IWU2 1503 aa3.57□□□□□ -1.84
LINC00643-201ENST00000334389 PTPRKQ15262 1439 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms