RNA–Protein interactions for RNA: ENST00000320876.10

SMCHD1-201, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMCHD1, Length 8,821 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-201ENST00000320876 SENP3Q9H4L4 574 aaPredicted RBP21.26■□□□□ 0.99
SMCHD1-201ENST00000320876 HSP90AA2PQ14568 343 aaPredicted RBP21.26■□□□□ 0.99
SMCHD1-201ENST00000320876 U2SURPO15042 1029 aaKnown RBP21.26■□□□□ 0.99
SMCHD1-201ENST00000320876 A0A0U1RQG5 324 aaPredicted RBP21.26■□□□□ 0.99
SMCHD1-201ENST00000320876 CCDC34Q96HJ3 373 aa21.26■□□□□ 0.99
SMCHD1-201ENST00000320876 IPO8O15397 1037 aaKnown RBP21.25■□□□□ 0.99
SMCHD1-201ENST00000320876 TCERG1O14776 1098 aaKnown RBP21.25■□□□□ 0.99
SMCHD1-201ENST00000320876 POGKQ9P215 609 aa21.24■□□□□ 0.99
SMCHD1-201ENST00000320876 TMF1P82094 1093 aa21.23■□□□□ 0.99
SMCHD1-201ENST00000320876 PLEKHD1A6NEE1 506 aa21.23■□□□□ 0.99
SMCHD1-201ENST00000320876 KTN1Q86UP2 1357 aaKnown RBP21.22■□□□□ 0.99
SMCHD1-201ENST00000320876 CFDP1Q9UEE9 299 aaPredicted RBP21.2■□□□□ 0.99
SMCHD1-201ENST00000320876 SLKQ9H2G2 1235 aaPredicted RBP21.2■□□□□ 0.98
SMCHD1-201ENST00000320876 IPO9Q96P70 1041 aaKnown RBP21.19■□□□□ 0.98
SMCHD1-201ENST00000320876 RWDD1Q9H446 243 aaPredicted RBP21.18■□□□□ 0.98
SMCHD1-201ENST00000320876 FHAD1B1AJZ9 1412 aa21.17■□□□□ 0.98
SMCHD1-201ENST00000320876 NCBP3Q53F19 620 aaKnown RBP21.16■□□□□ 0.98
SMCHD1-201ENST00000320876 CALD1Q05682 793 aaKnown RBP21.16■□□□□ 0.98
SMCHD1-201ENST00000320876 KIF27Q86VH2 1401 aa21.15■□□□□ 0.98
SMCHD1-201ENST00000320876 GPATCH3Q96I76 525 aa21.15■□□□□ 0.98
SMCHD1-201ENST00000320876 TNIKQ9UKE5 1360 aa21.14■□□□□ 0.98
SMCHD1-201ENST00000320876 KANK1Q14678 1352 aa21.14■□□□□ 0.97
SMCHD1-201ENST00000320876 DDX11L8A8MPP1 907 aa21.14■□□□□ 0.97
SMCHD1-201ENST00000320876 CCNB3Q8WWL7 1395 aa21.13■□□□□ 0.97
SMCHD1-201ENST00000320876 RCAN3Q9UKA8 241 aa21.13■□□□□ 0.97
SMCHD1-201ENST00000320876 PMFBP1Q8TBY8 1022 aa21.12■□□□□ 0.97
SMCHD1-201ENST00000320876 TIMELESSQ9UNS1 1208 aa21.12■□□□□ 0.97
SMCHD1-201ENST00000320876 RB1CC1Q8TDY2 1594 aa21.1■□□□□ 0.97
SMCHD1-201ENST00000320876 KCNH8Q96L42 1107 aa21.1■□□□□ 0.97
SMCHD1-201ENST00000320876 RTF1Q92541 710 aaKnown RBP21.1■□□□□ 0.97
SMCHD1-201ENST00000320876 ITPRIPQ8IWB1 547 aa21.09■□□□□ 0.97
SMCHD1-201ENST00000320876 MORC1Q86VD1 984 aa21.08■□□□□ 0.96
SMCHD1-201ENST00000320876 ISY1Q9ULR0 285 aaKnown RBP21.08■□□□□ 0.96
SMCHD1-201ENST00000320876 TPM3P06753 285 aa21.07■□□□□ 0.96
SMCHD1-201ENST00000320876 ARHGAP35Q9NRY4 1499 aa21.07■□□□□ 0.96
SMCHD1-201ENST00000320876 WRNQ14191 1432 aaPredicted RBP eCLIP21.06■□□□□ 0.961e-10■■■■■ 128
SMCHD1-201ENST00000320876 SIN3AQ96ST3 1273 aa21.05■□□□□ 0.96
SMCHD1-201ENST00000320876 HSP90B1P14625 803 aaKnown RBP21.05■□□□□ 0.96
SMCHD1-201ENST00000320876 LMOD2Q6P5Q4 547 aa21.05■□□□□ 0.96
SMCHD1-201ENST00000320876 GPS2Q13227 327 aa21.04■□□□□ 0.96
SMCHD1-201ENST00000320876 ST18O60284 1047 aa21.04■□□□□ 0.96
SMCHD1-201ENST00000320876 RALBP1Q15311 655 aa21.03■□□□□ 0.96
SMCHD1-201ENST00000320876 MFAP1P55081 439 aaKnown RBP21.03■□□□□ 0.96
SMCHD1-201ENST00000320876 DCAF11Q8TEB1 546 aa21.03■□□□□ 0.96
SMCHD1-201ENST00000320876 APBB1O00213 710 aa21.02■□□□□ 0.96
SMCHD1-201ENST00000320876 EIF3AQ14152 1382 aaKnown RBP21.02■□□□□ 0.95
SMCHD1-201ENST00000320876 SETD5Q9C0A6 1442 aa21.01■□□□□ 0.95
SMCHD1-201ENST00000320876 CALRP27797 417 aaKnown RBP21.01■□□□□ 0.95
SMCHD1-201ENST00000320876 CHMP4AQ9BY43 222 aa21■□□□□ 0.95
SMCHD1-201ENST00000320876 CCDC70Q6NSX1 233 aa21■□□□□ 0.95
SMCHD1-201ENST00000320876 KIF3AQ9Y496 699 aa21■□□□□ 0.95
SMCHD1-201ENST00000320876 KIF16BQ96L93 1317 aa20.99■□□□□ 0.95
SMCHD1-201ENST00000320876 SKOR2Q2VWA4 1001 aaPredicted RBP20.98■□□□□ 0.95
SMCHD1-201ENST00000320876 SRPK2P78362 688 aaKnown RBP20.98■□□□□ 0.95
SMCHD1-201ENST00000320876 HMMRO75330 724 aa20.98■□□□□ 0.95
SMCHD1-201ENST00000320876 ROCK2O75116 1388 aaKnown RBP20.98■□□□□ 0.95
SMCHD1-201ENST00000320876 TRIM6-TRIM34B2RNG4 842 aa20.97■□□□□ 0.95
SMCHD1-201ENST00000320876 BAZ1BQ9UIG0 1483 aaKnown RBP20.97■□□□□ 0.95
SMCHD1-201ENST00000320876 CEP89Q96ST8 783 aa20.97■□□□□ 0.95
SMCHD1-201ENST00000320876 PHLDB1Q86UU1 1377 aa20.96■□□□□ 0.95
SMCHD1-201ENST00000320876 PRM3Q9NNZ6 103 aa20.96■□□□□ 0.95
SMCHD1-201ENST00000320876 TSR1Q2NL82 804 aaKnown RBP20.95■□□□□ 0.95
SMCHD1-201ENST00000320876 RASSF8Q8NHQ8 419 aa20.95■□□□□ 0.94
SMCHD1-201ENST00000320876 ZNF771Q7L3S4 317 aaPredicted RBP20.95■□□□□ 0.94
SMCHD1-201ENST00000320876 HDAC5Q9UQL6 1122 aa20.95■□□□□ 0.94
SMCHD1-201ENST00000320876 EIF4G1Q04637 1599 aaKnown RBP20.95■□□□□ 0.94
SMCHD1-201ENST00000320876 TEX35Q5T0J7 233 aa20.94■□□□□ 0.94
SMCHD1-201ENST00000320876 ATP6V1DQ9Y5K8 247 aa20.94■□□□□ 0.94
SMCHD1-201ENST00000320876 TSHZ2Q9NRE2 1034 aa20.94■□□□□ 0.94
SMCHD1-201ENST00000320876 SPAG9O60271 1321 aaKnown RBP20.94■□□□□ 0.94
SMCHD1-201ENST00000320876 GSE1Q14687 1217 aa20.93■□□□□ 0.94
SMCHD1-201ENST00000320876 GOLGA6L19H0YKK7 550 aa20.92■□□□□ 0.94
SMCHD1-201ENST00000320876 HDGFP51858 240 aaKnown RBP20.91■□□□□ 0.94
SMCHD1-201ENST00000320876 VSIG10Q8N0Z9 540 aa20.91■□□□□ 0.94
SMCHD1-201ENST00000320876 TPM1P09493 284 aa20.9■□□□□ 0.94
SMCHD1-201ENST00000320876 CREBRFQ8IUR6 639 aa20.9■□□□□ 0.94
SMCHD1-201ENST00000320876 HDGFL2Q7Z4V5 671 aaPredicted RBP20.89■□□□□ 0.93
SMCHD1-201ENST00000320876 SMC4Q9NTJ3 1288 aa20.88■□□□□ 0.93
SMCHD1-201ENST00000320876 HSPA5P11021 654 aaKnown RBP20.88■□□□□ 0.93
SMCHD1-201ENST00000320876 GORABQ5T7V8 394 aa20.87■□□□□ 0.93
SMCHD1-201ENST00000320876 STK31Q9BXU1 1019 aa20.87■□□□□ 0.93
SMCHD1-201ENST00000320876 CHMP4CQ96CF2 233 aa20.86■□□□□ 0.93
SMCHD1-201ENST00000320876 TPM2P07951 284 aa20.86■□□□□ 0.93
SMCHD1-201ENST00000320876 TPD52L1Q16890 204 aaPredicted RBP20.86■□□□□ 0.93
SMCHD1-201ENST00000320876 NOM1Q5C9Z4 860 aaKnown RBP20.86■□□□□ 0.93
SMCHD1-201ENST00000320876 CCAR2Q8N163 923 aaKnown RBP20.85■□□□□ 0.93
SMCHD1-201ENST00000320876 U2AF1L5P0DN76 240 aaPredicted RBP20.85■□□□□ 0.93
SMCHD1-201ENST00000320876 U2AF1Q01081 240 aaKnown RBP eCLIP20.85■□□□□ 0.933e-6■■□□□ 14.2
SMCHD1-201ENST00000320876 H3BQV1 296 aa20.84■□□□□ 0.93
SMCHD1-201ENST00000320876 IFFO2Q5TF58 517 aa20.84■□□□□ 0.93
SMCHD1-201ENST00000320876 SF3A1Q15459 793 aaKnown RBP20.84■□□□□ 0.93
SMCHD1-201ENST00000320876 CENPJQ9HC77 1338 aaPredicted RBP20.84■□□□□ 0.93
SMCHD1-201ENST00000320876 PDE4CQ08493 712 aa20.84■□□□□ 0.93
SMCHD1-201ENST00000320876 PDE3BQ13370 1112 aa20.83■□□□□ 0.93
SMCHD1-201ENST00000320876 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.82■□□□□ 0.92
SMCHD1-201ENST00000320876 PES1O00541 588 aaKnown RBP20.82■□□□□ 0.92
SMCHD1-201ENST00000320876 SOX12O15370 315 aa20.81■□□□□ 0.92
SMCHD1-201ENST00000320876 CENPQQ7L2Z9 268 aaPredicted RBP20.81■□□□□ 0.92
SMCHD1-201ENST00000320876 FOXD4L1Q9NU39 408 aa20.81■□□□□ 0.92
SMCHD1-201ENST00000320876 BECN2A8MW95 431 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms