RNA–Protein interactions for RNA: ENST00000312196.8

MSL3-201, Transcript of MSL complex subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSL3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSL3-201ENST00000312196 CLIP1P30622 1438 aa13.82□□□□□ -0.2
MSL3-201ENST00000312196 LMTK3Q96Q04 1460 aa13.81□□□□□ -0.2
MSL3-201ENST00000312196 LRRIQ1Q96JM4 1722 aa13.81□□□□□ -0.2
MSL3-201ENST00000312196 ATP10AO60312 1499 aa13.8□□□□□ -0.2
MSL3-201ENST00000312196 ARHGEF12Q9NZN5 1544 aa13.8□□□□□ -0.2
MSL3-201ENST00000312196 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.79□□□□□ -0.2
MSL3-201ENST00000312196 HNRNPUL2Q1KMD3 747 aaKnown RBP13.79□□□□□ -0.2
MSL3-201ENST00000312196 C9orf84Q5VXU9 1444 aa13.79□□□□□ -0.2
MSL3-201ENST00000312196 EFCAB2Q5VUJ9 269 aa13.79□□□□□ -0.2
MSL3-201ENST00000312196 KDM5CP41229 1560 aa13.78□□□□□ -0.2
MSL3-201ENST00000312196 SCAPERQ9BY12 1400 aa13.76□□□□□ -0.21
MSL3-201ENST00000312196 RIMS1Q86UR5 1692 aaKnown RBP13.76□□□□□ -0.21
MSL3-201ENST00000312196 ZNF518AQ6AHZ1 1483 aa13.76□□□□□ -0.21
MSL3-201ENST00000312196 PREX2Q70Z35 1606 aa13.76□□□□□ -0.21
MSL3-201ENST00000312196 AGLP35573 1532 aa13.75□□□□□ -0.21
MSL3-201ENST00000312196 ARID3CA6NKF2 412 aa13.75□□□□□ -0.21
MSL3-201ENST00000312196 MLH3Q9UHC1 1453 aa13.74□□□□□ -0.21
MSL3-201ENST00000312196 ARID4BQ4LE39 1312 aaPredicted RBP13.73□□□□□ -0.21
MSL3-201ENST00000312196 YEATS2Q9ULM3 1422 aa13.73□□□□□ -0.21
MSL3-201ENST00000312196 CDC42BPBQ9Y5S2 1711 aa13.72□□□□□ -0.21
MSL3-201ENST00000312196 FER1L4A9Z1Z3 1794 aa13.7□□□□□ -0.22
MSL3-201ENST00000312196 ITSN2Q9NZM3 1697 aa13.7□□□□□ -0.22
MSL3-201ENST00000312196 ABCC1P33527 1531 aa13.7□□□□□ -0.22
MSL3-201ENST00000312196 RANGAP1P46060 587 aaPredicted RBP13.69□□□□□ -0.22
MSL3-201ENST00000312196 PREX1Q8TCU6 1659 aa13.69□□□□□ -0.22
MSL3-201ENST00000312196 ARHGAP5Q13017 1502 aa13.69□□□□□ -0.22
MSL3-201ENST00000312196 PLEKHH2Q8IVE3 1493 aa13.68□□□□□ -0.22
MSL3-201ENST00000312196 CDC42BPAQ5VT25 1732 aa13.68□□□□□ -0.22
MSL3-201ENST00000312196 SIGLEC1Q9BZZ2 1709 aa13.68□□□□□ -0.22
MSL3-201ENST00000312196 DMRT2Q9Y5R5 561 aa13.67□□□□□ -0.22
MSL3-201ENST00000312196 CNTLNQ9NXG0 1405 aa13.67□□□□□ -0.22
MSL3-201ENST00000312196 KIAA1107Q9UPP5 1409 aa13.66□□□□□ -0.22
MSL3-201ENST00000312196 DIP2CQ9Y2E4 1556 aa13.66□□□□□ -0.22
MSL3-201ENST00000312196 PTPRTO14522 1441 aa13.65□□□□□ -0.22
MSL3-201ENST00000312196 EHBP1L1Q8N3D4 1523 aa13.64□□□□□ -0.23
MSL3-201ENST00000312196 IQSEC2Q5JU85 1478 aa13.64□□□□□ -0.23
MSL3-201ENST00000312196 SETD1BQ9UPS6 1966 aaKnown RBP13.63□□□□□ -0.23
MSL3-201ENST00000312196 MAP3K1Q13233 1512 aa13.63□□□□□ -0.23
MSL3-201ENST00000312196 GPATCH8Q9UKJ3 1502 aaKnown RBP13.63□□□□□ -0.23
MSL3-201ENST00000312196 NPATQ14207 1427 aa13.62□□□□□ -0.23
MSL3-201ENST00000312196 CEP162Q5TB80 1403 aa13.62□□□□□ -0.23
MSL3-201ENST00000312196 MROH2AA6NES4 1674 aa13.61□□□□□ -0.23
MSL3-201ENST00000312196 PPP6R1Q9UPN7 881 aa13.61□□□□□ -0.23
MSL3-201ENST00000312196 UHRF1BP1Q6BDS2 1440 aa13.6□□□□□ -0.23
MSL3-201ENST00000312196 SAMD9LQ8IVG5 1584 aa13.6□□□□□ -0.23
MSL3-201ENST00000312196 CERKQ8TCT0 537 aa13.59□□□□□ -0.23
MSL3-201ENST00000312196 ATP1B4Q9UN42 357 aaPredicted RBP13.59□□□□□ -0.23
MSL3-201ENST00000312196 ABCA6Q8N139 1617 aa13.59□□□□□ -0.23
MSL3-201ENST00000312196 TRAPPC8Q9Y2L5 1435 aa13.59□□□□□ -0.23
MSL3-201ENST00000312196 KIDINS220Q9ULH0 1771 aa13.59□□□□□ -0.23
MSL3-201ENST00000312196 FAM135AQ9P2D6 1515 aa13.58□□□□□ -0.24
MSL3-201ENST00000312196 INO80Q9ULG1 1556 aaPredicted RBP13.57□□□□□ -0.24
MSL3-201ENST00000312196 TIAM1Q13009 1591 aa13.56□□□□□ -0.24
MSL3-201ENST00000312196 RTEL1-TNFRSF6BF6WH68 1400 aa13.55□□□□□ -0.24
MSL3-201ENST00000312196 CCNB3Q8WWL7 1395 aa13.55□□□□□ -0.24
MSL3-201ENST00000312196 AFAP1Q8N556 730 aa13.55□□□□□ -0.24
MSL3-201ENST00000312196 C3P01024 1663 aa13.54□□□□□ -0.24
MSL3-201ENST00000312196 PLXNC1O60486 1568 aa13.54□□□□□ -0.24
MSL3-201ENST00000312196 SUPT6HQ7KZ85 1726 aaKnown RBP13.54□□□□□ -0.24
MSL3-201ENST00000312196 MTUS2Q5JR59 1369 aa13.54□□□□□ -0.24
MSL3-201ENST00000312196 STRCQ7RTU9 1775 aa13.53□□□□□ -0.24
MSL3-201ENST00000312196 ADGBQ8N7X0 1667 aa13.53□□□□□ -0.24
MSL3-201ENST00000312196 VPS8Q8N3P4 1428 aa13.53□□□□□ -0.24
MSL3-201ENST00000312196 RSPH4AQ5TD94 716 aa13.52□□□□□ -0.24
MSL3-201ENST00000312196 ATP7AQ04656 1500 aa13.52□□□□□ -0.25
MSL3-201ENST00000312196 SYCP2Q9BX26 1530 aa13.52□□□□□ -0.25
MSL3-201ENST00000312196 HSPA2P54652 639 aa13.51□□□□□ -0.25
MSL3-201ENST00000312196 ARHGEF5Q12774 1597 aa13.51□□□□□ -0.25
MSL3-201ENST00000312196 NCOA1Q15788 1441 aa13.51□□□□□ -0.25
MSL3-201ENST00000312196 EHMT2Q96KQ7 1210 aa13.51□□□□□ -0.25
MSL3-201ENST00000312196 PLA2R1Q13018 1463 aa13.51□□□□□ -0.25
MSL3-201ENST00000312196 MBD5Q9P267 1494 aa13.51□□□□□ -0.25
MSL3-201ENST00000312196 MLECQ14165 292 aa13.5□□□□□ -0.25
MSL3-201ENST00000312196 ZNF142P52746 1687 aaPredicted RBP13.49□□□□□ -0.25
MSL3-201ENST00000312196 ESF1Q9H501 851 aaKnown RBP13.48□□□□□ -0.25
MSL3-201ENST00000312196 CFDP1Q9UEE9 299 aaPredicted RBP13.48□□□□□ -0.25
MSL3-201ENST00000312196 MAST1Q9Y2H9 1570 aa13.47□□□□□ -0.25
MSL3-201ENST00000312196 SPAG9O60271 1321 aaKnown RBP13.47□□□□□ -0.25
MSL3-201ENST00000312196 NCOA2Q15596 1464 aa13.47□□□□□ -0.25
MSL3-201ENST00000312196 LTBP4Q8N2S1 1624 aa13.47□□□□□ -0.25
MSL3-201ENST00000312196 A2MP01023 1474 aa13.47□□□□□ -0.25
MSL3-201ENST00000312196 LRRC9Q6ZRR7 1453 aa13.46□□□□□ -0.26
MSL3-201ENST00000312196 PKD2Q13563 968 aa13.45□□□□□ -0.26
MSL3-201ENST00000312196 MIA2Q96PC5 1412 aa13.45□□□□□ -0.26
MSL3-201ENST00000312196 CCDC141Q6ZP82 1450 aa13.44□□□□□ -0.26
MSL3-201ENST00000312196 ZMYM3Q14202 1370 aa13.44□□□□□ -0.26
MSL3-201ENST00000312196 CEBPAP49715 358 aaPredicted RBP13.44□□□□□ -0.26
MSL3-201ENST00000312196 PTPRKQ15262 1439 aa13.43□□□□□ -0.26
MSL3-201ENST00000312196 CAMSAP2Q08AD1 1489 aa13.42□□□□□ -0.26
MSL3-201ENST00000312196 TCOF1Q13428 1488 aaKnown RBP13.42□□□□□ -0.26
MSL3-201ENST00000312196 DHX29Q7Z478 1369 aaKnown RBP13.41□□□□□ -0.26
MSL3-201ENST00000312196 MYT1LQ9UL68 1186 aa13.41□□□□□ -0.26
MSL3-201ENST00000312196 HNRNPMP52272 730 aaKnown RBP eCLIP13.4□□□□□ -0.26
MSL3-201ENST00000312196 A2ML1A8K2U0 1454 aa13.39□□□□□ -0.27
MSL3-201ENST00000312196 CAMSAP1Q5T5Y3 1602 aa13.39□□□□□ -0.27
MSL3-201ENST00000312196 MYO3AQ8NEV4 1616 aa13.39□□□□□ -0.27
MSL3-201ENST00000312196 EIF2AK4Q9P2K8 1649 aaKnown RBP13.39□□□□□ -0.27
MSL3-201ENST00000312196 CEP170BQ9Y4F5 1589 aaPredicted RBP13.38□□□□□ -0.27
MSL3-201ENST00000312196 ZNF777Q9ULD5 760 aaPredicted RBP13.37□□□□□ -0.27
MSL3-201ENST00000312196 RNF17Q9BXT8 1623 aaKnown RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms