RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SLKQ9H2G2 1235 aaPredicted RBP22.06■■□□□ 1.12
SYNPO-201ENST00000307662 GOLGA6L3A6NEY3 463 aa22.06■■□□□ 1.12
SYNPO-201ENST00000307662 U2SURPO15042 1029 aaKnown RBP22.06■■□□□ 1.12
SYNPO-201ENST00000307662 FGD1P98174 961 aa22.05■■□□□ 1.12
SYNPO-201ENST00000307662 KCNJ4P48050 445 aa22.04■■□□□ 1.12
SYNPO-201ENST00000307662 DRC7Q8IY82 874 aa22.04■■□□□ 1.12
SYNPO-201ENST00000307662 KTN1Q86UP2 1357 aaKnown RBP22.03■■□□□ 1.12
SYNPO-201ENST00000307662 KANK4Q5T7N3 995 aaPredicted RBP22.03■■□□□ 1.12
SYNPO-201ENST00000307662 DCAF11Q8TEB1 546 aa22.03■■□□□ 1.12
SYNPO-201ENST00000307662 ARHGAP35Q9NRY4 1499 aa22.02■■□□□ 1.12
SYNPO-201ENST00000307662 KIAA2012Q0VF49 1180 aa22.02■■□□□ 1.12
SYNPO-201ENST00000307662 OS9Q13438 667 aaPredicted RBP22.02■■□□□ 1.12
SYNPO-201ENST00000307662 EIF4G1Q04637 1599 aaKnown RBP22.01■■□□□ 1.11
SYNPO-201ENST00000307662 SMARCA2P51531 1590 aa22■■□□□ 1.11
SYNPO-201ENST00000307662 ERCC6Q03468 1493 aa22■■□□□ 1.11
SYNPO-201ENST00000307662 USP35Q9P2H5 1018 aa21.99■■□□□ 1.11
SYNPO-201ENST00000307662 RWDD1Q9H446 243 aaPredicted RBP21.98■■□□□ 1.11
SYNPO-201ENST00000307662 RALBP1Q15311 655 aa21.97■■□□□ 1.11
SYNPO-201ENST00000307662 AMER1Q5JTC6 1135 aaPredicted RBP21.97■■□□□ 1.11
SYNPO-201ENST00000307662 TOP2AP11388 1531 aaKnown RBP21.94■■□□□ 1.1
SYNPO-201ENST00000307662 PLEKHG5O94827 1062 aa21.94■■□□□ 1.1
SYNPO-201ENST00000307662 ARID3AQ99856 593 aa21.94■■□□□ 1.1
SYNPO-201ENST00000307662 POGKQ9P215 609 aa21.94■■□□□ 1.1
SYNPO-201ENST00000307662 A0A0G2JS52 829 aa21.93■■□□□ 1.1
SYNPO-201ENST00000307662 NAP1L2Q9ULW6 460 aaPredicted RBP21.93■■□□□ 1.1
SYNPO-201ENST00000307662 RSPH6AQ9H0K4 717 aa21.93■■□□□ 1.1
SYNPO-201ENST00000307662 RAB3GAP2Q9H2M9 1393 aa21.93■■□□□ 1.1
SYNPO-201ENST00000307662 MORC1Q86VD1 984 aa21.92■■□□□ 1.1
SYNPO-201ENST00000307662 TAOK2Q9UL54 1235 aa21.92■■□□□ 1.1
SYNPO-201ENST00000307662 IPO8O15397 1037 aaKnown RBP21.92■■□□□ 1.1
SYNPO-201ENST00000307662 SYAP1Q96A49 352 aaPredicted RBP21.91■■□□□ 1.1
SYNPO-201ENST00000307662 PMFBP1Q8TBY8 1022 aa21.9■■□□□ 1.1
SYNPO-201ENST00000307662 FMN1Q68DA7 1419 aa21.88■■□□□ 1.09
SYNPO-201ENST00000307662 HSP90AA2PQ14568 343 aaPredicted RBP21.87■■□□□ 1.09
SYNPO-201ENST00000307662 WIZO95785 1651 aa21.87■■□□□ 1.09
SYNPO-201ENST00000307662 HAP1P54257 671 aaPredicted RBP21.86■■□□□ 1.09
SYNPO-201ENST00000307662 MFAP1P55081 439 aaKnown RBP21.86■■□□□ 1.09
SYNPO-201ENST00000307662 FANCIQ9NVI1 1328 aa21.85■■□□□ 1.09
SYNPO-201ENST00000307662 PDE3BQ13370 1112 aa21.84■■□□□ 1.09
SYNPO-201ENST00000307662 ITPRIPQ8IWB1 547 aa21.84■■□□□ 1.09
SYNPO-201ENST00000307662 KANK1Q14678 1352 aa21.84■■□□□ 1.09
SYNPO-201ENST00000307662 GSE1Q14687 1217 aa21.83■■□□□ 1.09
SYNPO-201ENST00000307662 PKD2Q13563 968 aa21.83■■□□□ 1.09
SYNPO-201ENST00000307662 CALD1Q05682 793 aaKnown RBP21.82■■□□□ 1.08
SYNPO-201ENST00000307662 PDS5BQ9NTI5 1447 aa21.8■■□□□ 1.08
SYNPO-201ENST00000307662 KIAA1211Q6ZU35 1233 aa21.8■■□□□ 1.08
SYNPO-201ENST00000307662 MPHOSPH9Q99550 1183 aa21.79■■□□□ 1.08
SYNPO-201ENST00000307662 FOXD1Q16676 465 aa21.79■■□□□ 1.08
SYNPO-201ENST00000307662 APBB1O00213 710 aa21.78■■□□□ 1.08
SYNPO-201ENST00000307662 GOLGA2Q08379 1002 aa21.78■■□□□ 1.08
SYNPO-201ENST00000307662 TNNT3P45378 269 aaPredicted RBP21.78■■□□□ 1.08
SYNPO-201ENST00000307662 CARMIL2Q6F5E8 1435 aa21.78■■□□□ 1.08
SYNPO-201ENST00000307662 PDE4AP27815 886 aa21.77■■□□□ 1.08
SYNPO-201ENST00000307662 TDRD9Q8NDG6 1382 aaKnown RBP21.77■■□□□ 1.08
SYNPO-201ENST00000307662 DDX11L8A8MPP1 907 aa21.77■■□□□ 1.08
SYNPO-201ENST00000307662 TULP1O00294 542 aaPredicted RBP21.77■■□□□ 1.08
SYNPO-201ENST00000307662 ROCK2O75116 1388 aaKnown RBP21.77■■□□□ 1.08
SYNPO-201ENST00000307662 HTATSF1O43719 755 aaKnown RBP21.76■■□□□ 1.07
SYNPO-201ENST00000307662 RAPGEF2Q9Y4G8 1499 aa21.74■■□□□ 1.07
SYNPO-201ENST00000307662 SRPK2P78362 688 aaKnown RBP21.73■■□□□ 1.07
SYNPO-201ENST00000307662 NLRP13Q86W25 1043 aa21.73■■□□□ 1.07
SYNPO-201ENST00000307662 FAM161AQ3B820 660 aa21.72■■□□□ 1.07
SYNPO-201ENST00000307662 U2AF1L5P0DN76 240 aaPredicted RBP21.72■■□□□ 1.07
SYNPO-201ENST00000307662 U2AF1Q01081 240 aaKnown RBP eCLIP21.72■■□□□ 1.07
SYNPO-201ENST00000307662 VSIG10Q8N0Z9 540 aa21.71■■□□□ 1.07
SYNPO-201ENST00000307662 CENPQQ7L2Z9 268 aaPredicted RBP21.71■■□□□ 1.07
SYNPO-201ENST00000307662 GNL2Q13823 731 aaKnown RBP21.7■■□□□ 1.06
SYNPO-201ENST00000307662 ANKRD30AQ9BXX3 1397 aa21.7■■□□□ 1.06
SYNPO-201ENST00000307662 CADPSQ9ULU8 1353 aa21.69■■□□□ 1.06
SYNPO-201ENST00000307662 CENPJQ9HC77 1338 aaPredicted RBP21.69■■□□□ 1.06
SYNPO-201ENST00000307662 CSPP1Q1MSJ5 1256 aa21.69■■□□□ 1.06
SYNPO-201ENST00000307662 NUP155O75694 1391 aa21.68■■□□□ 1.06
SYNPO-201ENST00000307662 FOXD4L1Q9NU39 408 aa21.68■■□□□ 1.06
SYNPO-201ENST00000307662 PHF14O94880 888 aa21.68■■□□□ 1.06
SYNPO-201ENST00000307662 SMC4Q9NTJ3 1288 aa21.68■■□□□ 1.06
SYNPO-201ENST00000307662 RTF1Q92541 710 aaKnown RBP21.68■■□□□ 1.06
SYNPO-201ENST00000307662 TPM4P67936 248 aa21.68■■□□□ 1.06
SYNPO-201ENST00000307662 PHLDB1Q86UU1 1377 aa21.67■■□□□ 1.06
SYNPO-201ENST00000307662 SLC4A3P48751 1232 aa21.67■■□□□ 1.06
SYNPO-201ENST00000307662 L3MBTL2Q969R5 705 aa21.66■■□□□ 1.06
SYNPO-201ENST00000307662 ZBED9Q6R2W3 1325 aa21.66■■□□□ 1.06
SYNPO-201ENST00000307662 FHOD3Q2V2M9 1422 aa21.65■■□□□ 1.06
SYNPO-201ENST00000307662 SKOR2Q2VWA4 1001 aaPredicted RBP21.64■■□□□ 1.06
SYNPO-201ENST00000307662 DHX57Q6P158 1386 aaKnown RBP21.64■■□□□ 1.06
SYNPO-201ENST00000307662 ATAD2BQ9ULI0 1458 aa21.64■■□□□ 1.05
SYNPO-201ENST00000307662 CLUAP1Q96AJ1 413 aa21.63■■□□□ 1.05
SYNPO-201ENST00000307662 RRP1P56182 461 aaKnown RBP21.63■■□□□ 1.05
SYNPO-201ENST00000307662 KIF15Q9NS87 1388 aa21.63■■□□□ 1.05
SYNPO-201ENST00000307662 ST18O60284 1047 aa21.62■■□□□ 1.05
SYNPO-201ENST00000307662 HDGFL2Q7Z4V5 671 aaPredicted RBP21.62■■□□□ 1.05
SYNPO-201ENST00000307662 MYBBP1AQ9BQG0 1328 aaKnown RBP21.62■■□□□ 1.05
SYNPO-201ENST00000307662 EXOC6Q8TAG9 804 aa21.61■■□□□ 1.05
SYNPO-201ENST00000307662 EFCAB2Q5VUJ9 269 aa21.61■■□□□ 1.05
SYNPO-201ENST00000307662 CCDC146Q8IYE0 955 aa21.61■■□□□ 1.05
SYNPO-201ENST00000307662 LMOD2Q6P5Q4 547 aa21.6■■□□□ 1.05
SYNPO-201ENST00000307662 HDGFP51858 240 aaKnown RBP21.6■■□□□ 1.05
SYNPO-201ENST00000307662 SAFB2Q14151 953 aaKnown RBP eCLIP21.6■■□□□ 1.05
SYNPO-201ENST00000307662 GOLGA6L1Q8N7Z2 621 aa21.6■■□□□ 1.05
SYNPO-201ENST00000307662 SMARCA4P51532 1647 aa21.6■■□□□ 1.05
SYNPO-201ENST00000307662 HMMRO75330 724 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms