RNA–Protein interactions for RNA: ENST00000278412.6

SSRP1-201, Transcript of structure specific recognition protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSRP1, Length 2,819 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1-201ENST00000278412 ABCC5O15440 1437 aa17.46■□□□□ 0.39
SSRP1-201ENST00000278412 RIMBP3CA6NJZ7 1639 aa17.45■□□□□ 0.38
SSRP1-201ENST00000278412 RIMBP3BA6NNM3 1639 aa17.45■□□□□ 0.38
SSRP1-201ENST00000278412 KDM6BO15054 1643 aa17.45■□□□□ 0.38
SSRP1-201ENST00000278412 RIMBP3Q9UFD9 1639 aa17.45■□□□□ 0.38
SSRP1-201ENST00000278412 CDC42BPBQ9Y5S2 1711 aa17.45■□□□□ 0.38
SSRP1-201ENST00000278412 DAPK1P53355 1430 aa17.44■□□□□ 0.38
SSRP1-201ENST00000278412 NAIPQ13075 1403 aa17.42■□□□□ 0.38
SSRP1-201ENST00000278412 ASXL2Q76L83 1435 aa17.42■□□□□ 0.38
SSRP1-201ENST00000278412 ITSN2Q9NZM3 1697 aa17.42■□□□□ 0.38
SSRP1-201ENST00000278412 SAMD9LQ8IVG5 1584 aa17.39■□□□□ 0.38
SSRP1-201ENST00000278412 WDR7Q9Y4E6 1490 aa17.39■□□□□ 0.37
SSRP1-201ENST00000278412 DNMT1P26358 1616 aaKnown RBP17.39■□□□□ 0.37
SSRP1-201ENST00000278412 HFM1A2PYH4 1435 aa17.38■□□□□ 0.37
SSRP1-201ENST00000278412 ARHGAP5Q13017 1502 aa17.38■□□□□ 0.37
SSRP1-201ENST00000278412 PREX2Q70Z35 1606 aa17.38■□□□□ 0.37
SSRP1-201ENST00000278412 ARHGEF12Q9NZN5 1544 aa17.35■□□□□ 0.37
SSRP1-201ENST00000278412 NPM1P06748 294 aaKnown RBP eCLIP17.35■□□□□ 0.37
SSRP1-201ENST00000278412 SYCP2Q9BX26 1530 aa17.35■□□□□ 0.37
SSRP1-201ENST00000278412 MYO5CQ9NQX4 1742 aa17.34■□□□□ 0.37
SSRP1-201ENST00000278412 MAPKBP1O60336 1514 aa17.34■□□□□ 0.37
SSRP1-201ENST00000278412 MBD5Q9P267 1494 aa17.33■□□□□ 0.37
SSRP1-201ENST00000278412 ZEB1P37275 1124 aaPredicted RBP17.33■□□□□ 0.36
SSRP1-201ENST00000278412 SIN3AQ96ST3 1273 aa17.32■□□□□ 0.36
SSRP1-201ENST00000278412 AKNAQ7Z591 1439 aa17.32■□□□□ 0.36
SSRP1-201ENST00000278412 FOXD1Q16676 465 aa17.31■□□□□ 0.36
SSRP1-201ENST00000278412 PLCH2O75038 1416 aa17.31■□□□□ 0.36
SSRP1-201ENST00000278412 TRIM52Q96A61 297 aa17.29■□□□□ 0.36
SSRP1-201ENST00000278412 NCOA1Q15788 1441 aa17.29■□□□□ 0.36
SSRP1-201ENST00000278412 CROCC2H7BZ55 1655 aa17.29■□□□□ 0.36
SSRP1-201ENST00000278412 AFAP1Q8N556 730 aa17.28■□□□□ 0.36
SSRP1-201ENST00000278412 C9orf84Q5VXU9 1444 aa17.28■□□□□ 0.36
SSRP1-201ENST00000278412 GCC2Q8IWJ2 1684 aa17.28■□□□□ 0.36
SSRP1-201ENST00000278412 PELP1Q8IZL8 1130 aaKnown RBP17.27■□□□□ 0.36
SSRP1-201ENST00000278412 TRAPPC8Q9Y2L5 1435 aa17.27■□□□□ 0.36
SSRP1-201ENST00000278412 NEUROD1Q13562 356 aa17.27■□□□□ 0.35
SSRP1-201ENST00000278412 DENND4BO75064 1496 aaPredicted RBP17.26■□□□□ 0.35
SSRP1-201ENST00000278412 EFCAB2Q5VUJ9 269 aa17.25■□□□□ 0.35
SSRP1-201ENST00000278412 ABCA9Q8IUA7 1624 aa17.25■□□□□ 0.35
SSRP1-201ENST00000278412 ROCK1Q13464 1354 aa17.23■□□□□ 0.35
SSRP1-201ENST00000278412 TSPY4P0CV99 314 aa17.23■□□□□ 0.35
SSRP1-201ENST00000278412 TSPY10P0CW01 314 aa17.23■□□□□ 0.35
SSRP1-201ENST00000278412 FANCAO15360 1455 aa17.23■□□□□ 0.35
SSRP1-201ENST00000278412 CCDC141Q6ZP82 1450 aa17.23■□□□□ 0.35
SSRP1-201ENST00000278412 ADGBQ8N7X0 1667 aa17.21■□□□□ 0.35
SSRP1-201ENST00000278412 ABCC1P33527 1531 aa17.21■□□□□ 0.35
SSRP1-201ENST00000278412 KIF15Q9NS87 1388 aa17.2■□□□□ 0.34
SSRP1-201ENST00000278412 ARHGEF5Q12774 1597 aa17.2■□□□□ 0.34
SSRP1-201ENST00000278412 ANKRD30AQ9BXX3 1397 aa17.2■□□□□ 0.34
SSRP1-201ENST00000278412 CD109Q6YHK3 1445 aa17.19■□□□□ 0.34
SSRP1-201ENST00000278412 ADGRL2O95490 1459 aa17.19■□□□□ 0.34
SSRP1-201ENST00000278412 ANKRD50Q9ULJ7 1429 aa17.17■□□□□ 0.34
SSRP1-201ENST00000278412 MPHOSPH9Q99550 1183 aa17.17■□□□□ 0.34
SSRP1-201ENST00000278412 SCAPERQ9BY12 1400 aa17.16■□□□□ 0.34
SSRP1-201ENST00000278412 FAM69CQ0P6D2 419 aa17.16■□□□□ 0.34
SSRP1-201ENST00000278412 SHANK2Q9UPX8 1470 aa17.16■□□□□ 0.34
SSRP1-201ENST00000278412 KIAA1107Q9UPP5 1409 aa17.15■□□□□ 0.34
SSRP1-201ENST00000278412 ADGRL1O94910 1474 aa17.15■□□□□ 0.34
SSRP1-201ENST00000278412 RAPGEF3O95398 923 aa17.13■□□□□ 0.33
SSRP1-201ENST00000278412 MYT1LQ9UL68 1186 aa17.13■□□□□ 0.33
SSRP1-201ENST00000278412 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.12■□□□□ 0.332e-7■■■□□ 17.6
SSRP1-201ENST00000278412 SLC4A1APQ9BWU0 796 aaKnown RBP17.12■□□□□ 0.33
SSRP1-201ENST00000278412 TSPOAP1O95153 1857 aa17.12■□□□□ 0.33
SSRP1-201ENST00000278412 PZPP20742 1482 aa17.12■□□□□ 0.33
SSRP1-201ENST00000278412 SPAG9O60271 1321 aaKnown RBP17.11■□□□□ 0.33
SSRP1-201ENST00000278412 PLEKHH2Q8IVE3 1493 aa17.11■□□□□ 0.33
SSRP1-201ENST00000278412 CLSPNQ9HAW4 1339 aa17.11■□□□□ 0.33
SSRP1-201ENST00000278412 ARAP3Q8WWN8 1544 aa17.09■□□□□ 0.33
SSRP1-201ENST00000278412 NUP155O75694 1391 aa17.09■□□□□ 0.33
SSRP1-201ENST00000278412 RSPH4AQ5TD94 716 aa17.07■□□□□ 0.32
SSRP1-201ENST00000278412 DIP2BQ9P265 1576 aa17.07■□□□□ 0.32
SSRP1-201ENST00000278412 ZFYVE16Q7Z3T8 1539 aa17.07■□□□□ 0.32
SSRP1-201ENST00000278412 PKD2Q13563 968 aa17.06■□□□□ 0.32
SSRP1-201ENST00000278412 MAST1Q9Y2H9 1570 aa17.06■□□□□ 0.32
SSRP1-201ENST00000278412 MAP3K4Q9Y6R4 1608 aa17.05■□□□□ 0.32
SSRP1-201ENST00000278412 ATP7AQ04656 1500 aa17.03■□□□□ 0.32
SSRP1-201ENST00000278412 PLXNC1O60486 1568 aa17.02■□□□□ 0.32
SSRP1-201ENST00000278412 INO80Q9ULG1 1556 aaPredicted RBP17.01■□□□□ 0.31
SSRP1-201ENST00000278412 KIDINS220Q9ULH0 1771 aa17.01■□□□□ 0.31
SSRP1-201ENST00000278412 ANKRD30BQ9BXX2 1392 aa17■□□□□ 0.31
SSRP1-201ENST00000278412 POGZQ7Z3K3 1410 aa17■□□□□ 0.31
SSRP1-201ENST00000278412 PPRC1Q5VV67 1664 aaKnown RBP17■□□□□ 0.31
SSRP1-201ENST00000278412 KIF13AQ9H1H9 1805 aa17■□□□□ 0.31
SSRP1-201ENST00000278412 HIRIP3Q9BW71 556 aaPredicted RBP16.98■□□□□ 0.31
SSRP1-201ENST00000278412 DUOX2Q9NRD8 1548 aa16.98■□□□□ 0.31
SSRP1-201ENST00000278412 KIF3BO15066 747 aa16.97■□□□□ 0.31
SSRP1-201ENST00000278412 ZNF518AQ6AHZ1 1483 aa16.97■□□□□ 0.31
SSRP1-201ENST00000278412 FAM135AQ9P2D6 1515 aa16.97■□□□□ 0.31
SSRP1-201ENST00000278412 GLI2P10070 1586 aa16.97■□□□□ 0.31
SSRP1-201ENST00000278412 TONSLQ96HA7 1378 aa16.96■□□□□ 0.31
SSRP1-201ENST00000278412 YEATS2Q9ULM3 1422 aa16.95■□□□□ 0.3
SSRP1-201ENST00000278412 COL17A1Q9UMD9 1497 aaPredicted RBP16.95■□□□□ 0.3
SSRP1-201ENST00000278412 RTEL1-TNFRSF6BF6WH68 1400 aa16.94■□□□□ 0.3
SSRP1-201ENST00000278412 L3MBTL2Q969R5 705 aa16.94■□□□□ 0.3
SSRP1-201ENST00000278412 NEO1Q92859 1461 aa16.94■□□□□ 0.3
SSRP1-201ENST00000278412 PPP1R15AO75807 674 aaPredicted RBP16.93■□□□□ 0.3
SSRP1-201ENST00000278412 KDM5CP41229 1560 aa16.93■□□□□ 0.3
SSRP1-201ENST00000278412 FRMPD1Q5SYB0 1578 aa16.93■□□□□ 0.3
SSRP1-201ENST00000278412 ERBINQ96RT1 1412 aa16.92■□□□□ 0.3
SSRP1-201ENST00000278412 ABCA6Q8N139 1617 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms