RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 KCNH8Q96L42 1107 aa21.06■□□□□ 0.96
SS18-201ENST00000269137 DNMT1P26358 1616 aaKnown RBP21.04■□□□□ 0.96
SS18-201ENST00000269137 ASXL2Q76L83 1435 aa21.03■□□□□ 0.96
SS18-201ENST00000269137 CDC42BPBQ9Y5S2 1711 aa21.03■□□□□ 0.96
SS18-201ENST00000269137 RAB3GAP2Q9H2M9 1393 aa21.03■□□□□ 0.96
SS18-201ENST00000269137 DAPK1P53355 1430 aa21.03■□□□□ 0.96
SS18-201ENST00000269137 HFM1A2PYH4 1435 aa21.02■□□□□ 0.96
SS18-201ENST00000269137 ABCC5O15440 1437 aa21.02■□□□□ 0.96
SS18-201ENST00000269137 AKNAQ7Z591 1439 aa21.02■□□□□ 0.95
SS18-201ENST00000269137 MYO5CQ9NQX4 1742 aa21.01■□□□□ 0.95
SS18-201ENST00000269137 ZNF777Q9ULD5 760 aaPredicted RBP21.01■□□□□ 0.95
SS18-201ENST00000269137 PLCH2O75038 1416 aa20.99■□□□□ 0.95
SS18-201ENST00000269137 CYB5RLQ6IPT4 315 aa20.99■□□□□ 0.95
SS18-201ENST00000269137 ROCK1Q13464 1354 aa20.98■□□□□ 0.95
SS18-201ENST00000269137 NAIPQ13075 1403 aa20.97■□□□□ 0.95
SS18-201ENST00000269137 ARAP3Q8WWN8 1544 aa20.97■□□□□ 0.95
SS18-201ENST00000269137 ARHGAP5Q13017 1502 aa20.96■□□□□ 0.95
SS18-201ENST00000269137 ABCA9Q8IUA7 1624 aa20.96■□□□□ 0.95
SS18-201ENST00000269137 SAMD9LQ8IVG5 1584 aa20.95■□□□□ 0.94
SS18-201ENST00000269137 DHX57Q6P158 1386 aaKnown RBP20.94■□□□□ 0.94
SS18-201ENST00000269137 ARHGEF5Q12774 1597 aa20.94■□□□□ 0.94
SS18-201ENST00000269137 CHIC2Q9UKJ5 165 aa20.94■□□□□ 0.94
SS18-201ENST00000269137 PLEKHH2Q8IVE3 1493 aa20.93■□□□□ 0.94
SS18-201ENST00000269137 MBD5Q9P267 1494 aa20.93■□□□□ 0.94
SS18-201ENST00000269137 CROCC2H7BZ55 1655 aa20.93■□□□□ 0.94
SS18-201ENST00000269137 RSPH4AQ5TD94 716 aa20.92■□□□□ 0.94
SS18-201ENST00000269137 KIAA1107Q9UPP5 1409 aa20.92■□□□□ 0.94
SS18-201ENST00000269137 GCC2Q8IWJ2 1684 aa20.92■□□□□ 0.94
SS18-201ENST00000269137 EFCAB2Q5VUJ9 269 aa20.92■□□□□ 0.94
SS18-201ENST00000269137 SHANK2Q9UPX8 1470 aa20.91■□□□□ 0.94
SS18-201ENST00000269137 MAPKBP1O60336 1514 aa20.91■□□□□ 0.94
SS18-201ENST00000269137 CLSPNQ9HAW4 1339 aa20.91■□□□□ 0.94
SS18-201ENST00000269137 ADGRL2O95490 1459 aa20.9■□□□□ 0.94
SS18-201ENST00000269137 RRP7BPQ9NSQ0 103 aa20.9■□□□□ 0.94
SS18-201ENST00000269137 ADGBQ8N7X0 1667 aa20.88■□□□□ 0.93
SS18-201ENST00000269137 HNRNPMP52272 730 aaKnown RBP eCLIP20.88■□□□□ 0.93
SS18-201ENST00000269137 NCOA1Q15788 1441 aa20.87■□□□□ 0.93
SS18-201ENST00000269137 CCDC141Q6ZP82 1450 aa20.87■□□□□ 0.93
SS18-201ENST00000269137 SYCP2Q9BX26 1530 aa20.85■□□□□ 0.93
SS18-201ENST00000269137 TSPY4P0CV99 314 aa20.85■□□□□ 0.93
SS18-201ENST00000269137 TSPY10P0CW01 314 aa20.85■□□□□ 0.93
SS18-201ENST00000269137 ACIN1Q9UKV3 1341 aaKnown RBP20.85■□□□□ 0.93
SS18-201ENST00000269137 ANKRD30AQ9BXX3 1397 aa20.85■□□□□ 0.93
SS18-201ENST00000269137 C9orf84Q5VXU9 1444 aa20.85■□□□□ 0.93
SS18-201ENST00000269137 ABCC1P33527 1531 aa20.83■□□□□ 0.92
SS18-201ENST00000269137 ARHGEF12Q9NZN5 1544 aa20.81■□□□□ 0.92
SS18-201ENST00000269137 FANCAO15360 1455 aa20.81■□□□□ 0.92
SS18-201ENST00000269137 MAST1Q9Y2H9 1570 aa20.8■□□□□ 0.92
SS18-201ENST00000269137 CD109Q6YHK3 1445 aa20.79■□□□□ 0.92
SS18-201ENST00000269137 KDM6BO15054 1643 aa20.78■□□□□ 0.92
SS18-201ENST00000269137 GLI2P10070 1586 aa20.77■□□□□ 0.92
SS18-201ENST00000269137 TRAPPC8Q9Y2L5 1435 aa20.73■□□□□ 0.91
SS18-201ENST00000269137 CFAP74Q9C0B2 1584 aa20.73■□□□□ 0.91
SS18-201ENST00000269137 ANKRD50Q9ULJ7 1429 aa20.73■□□□□ 0.91
SS18-201ENST00000269137 KIF15Q9NS87 1388 aa20.72■□□□□ 0.91
SS18-201ENST00000269137 ADGRL1O94910 1474 aa20.72■□□□□ 0.91
SS18-201ENST00000269137 PLXNC1O60486 1568 aa20.71■□□□□ 0.91
SS18-201ENST00000269137 MAP3K4Q9Y6R4 1608 aa20.7■□□□□ 0.9
SS18-201ENST00000269137 SCAPERQ9BY12 1400 aa20.7■□□□□ 0.9
SS18-201ENST00000269137 RTEL1-TNFRSF6BF6WH68 1400 aa20.69■□□□□ 0.9
SS18-201ENST00000269137 NEO1Q92859 1461 aa20.68■□□□□ 0.9
SS18-201ENST00000269137 DIP2BQ9P265 1576 aa20.68■□□□□ 0.9
SS18-201ENST00000269137 TRIM52Q96A61 297 aa20.68■□□□□ 0.9
SS18-201ENST00000269137 SPAG9O60271 1321 aaKnown RBP20.66■□□□□ 0.9
SS18-201ENST00000269137 AFAP1Q8N556 730 aa20.66■□□□□ 0.9
SS18-201ENST00000269137 FAM69CQ0P6D2 419 aa20.64■□□□□ 0.89
SS18-201ENST00000269137 MPHOSPH9Q99550 1183 aa20.63■□□□□ 0.89
SS18-201ENST00000269137 ZFYVE16Q7Z3T8 1539 aa20.63■□□□□ 0.89
SS18-201ENST00000269137 DUOX2Q9NRD8 1548 aa20.62■□□□□ 0.89
SS18-201ENST00000269137 DENND4BO75064 1496 aaPredicted RBP20.62■□□□□ 0.89
SS18-201ENST00000269137 ZNF518AQ6AHZ1 1483 aa20.62■□□□□ 0.89
SS18-201ENST00000269137 INO80Q9ULG1 1556 aaPredicted RBP20.61■□□□□ 0.89
SS18-201ENST00000269137 POGZQ7Z3K3 1410 aa20.6■□□□□ 0.89
SS18-201ENST00000269137 ERBINQ96RT1 1412 aa20.59■□□□□ 0.89
SS18-201ENST00000269137 ATP7AQ04656 1500 aa20.59■□□□□ 0.89
SS18-201ENST00000269137 PZPP20742 1482 aa20.59■□□□□ 0.89
SS18-201ENST00000269137 KDM5DQ9BY66 1539 aa20.58■□□□□ 0.89
SS18-201ENST00000269137 KDM5CP41229 1560 aa20.58■□□□□ 0.88
SS18-201ENST00000269137 SLC4A1APQ9BWU0 796 aaKnown RBP20.56■□□□□ 0.88
SS18-201ENST00000269137 TIMELESSQ9UNS1 1208 aa20.55■□□□□ 0.88
SS18-201ENST00000269137 NUP155O75694 1391 aa20.54■□□□□ 0.88
SS18-201ENST00000269137 SIN3AQ96ST3 1273 aa20.54■□□□□ 0.88
SS18-201ENST00000269137 MLH3Q9UHC1 1453 aa20.54■□□□□ 0.88
SS18-201ENST00000269137 UNC13BO14795 1591 aa20.53■□□□□ 0.88
SS18-201ENST00000269137 KIF13AQ9H1H9 1805 aa20.53■□□□□ 0.88
SS18-201ENST00000269137 TEX14Q8IWB6 1497 aa20.53■□□□□ 0.88
SS18-201ENST00000269137 KIDINS220Q9ULH0 1771 aa20.53■□□□□ 0.88
SS18-201ENST00000269137 PPRC1Q5VV67 1664 aaKnown RBP20.52■□□□□ 0.88
SS18-201ENST00000269137 ANKRD30BQ9BXX2 1392 aa20.5■□□□□ 0.87
SS18-201ENST00000269137 NEUROD1Q13562 356 aa20.49■□□□□ 0.87
SS18-201ENST00000269137 MAGI2Q86UL8 1455 aa20.49■□□□□ 0.87
SS18-201ENST00000269137 HECW2Q9P2P5 1572 aa20.49■□□□□ 0.87
SS18-201ENST00000269137 RICTORQ6R327 1708 aa20.48■□□□□ 0.87
SS18-201ENST00000269137 DHX29Q7Z478 1369 aaKnown RBP20.48■□□□□ 0.87
SS18-201ENST00000269137 TSPOAP1O95153 1857 aa20.48■□□□□ 0.87
SS18-201ENST00000269137 DNAJC5Q9H3Z4 198 aa20.48■□□□□ 0.87
SS18-201ENST00000269137 MYT1LQ9UL68 1186 aa20.47■□□□□ 0.87
SS18-201ENST00000269137 RAPGEF3O95398 923 aa20.46■□□□□ 0.87
SS18-201ENST00000269137 FAM135AQ9P2D6 1515 aa20.46■□□□□ 0.87
SS18-201ENST00000269137 PKD2Q13563 968 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms