RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 GGT6Q6P531 493 aa11.2□□□□□ -0.62
PTCD3-201ENST00000254630 PPP4R2Q9NY27 417 aa11.2□□□□□ -0.62
PTCD3-201ENST00000254630 KTN1Q86UP2 1357 aaKnown RBP11.2□□□□□ -0.62
PTCD3-201ENST00000254630 RGS3P49796 1198 aa11.2□□□□□ -0.62
PTCD3-201ENST00000254630 EIF3AQ14152 1382 aaKnown RBP11.19□□□□□ -0.62
PTCD3-201ENST00000254630 RTF1Q92541 710 aaKnown RBP11.19□□□□□ -0.62
PTCD3-201ENST00000254630 NAP1L2Q9ULW6 460 aaPredicted RBP11.19□□□□□ -0.62
PTCD3-201ENST00000254630 KCNJ4P48050 445 aa11.18□□□□□ -0.62
PTCD3-201ENST00000254630 PKD2Q13563 968 aa11.18□□□□□ -0.62
PTCD3-201ENST00000254630 ANKRD30AQ9BXX3 1397 aa11.18□□□□□ -0.62
PTCD3-201ENST00000254630 HSPA5P11021 654 aaKnown RBP11.18□□□□□ -0.62
PTCD3-201ENST00000254630 FGD1P98174 961 aa11.17□□□□□ -0.62
PTCD3-201ENST00000254630 SMARCA4P51532 1647 aa11.16□□□□□ -0.62
PTCD3-201ENST00000254630 GOLGA6L6A8MZA4 724 aa11.16□□□□□ -0.62
PTCD3-201ENST00000254630 PAK3O75914 559 aaPredicted RBP11.16□□□□□ -0.62
PTCD3-201ENST00000254630 RAPGEF2Q9Y4G8 1499 aa11.16□□□□□ -0.62
PTCD3-201ENST00000254630 FOXD1Q16676 465 aa11.15□□□□□ -0.62
PTCD3-201ENST00000254630 CCDC18Q5T9S5 1454 aa11.15□□□□□ -0.62
PTCD3-201ENST00000254630 TDRD9Q8NDG6 1382 aaKnown RBP11.15□□□□□ -0.63
PTCD3-201ENST00000254630 MCCP23508 829 aa11.14□□□□□ -0.63
PTCD3-201ENST00000254630 TIMELESSQ9UNS1 1208 aa11.13□□□□□ -0.63
PTCD3-201ENST00000254630 HSCBQ8IWL3 235 aa11.13□□□□□ -0.63
PTCD3-201ENST00000254630 NUP155O75694 1391 aa11.13□□□□□ -0.63
PTCD3-201ENST00000254630 DNTTIP2Q5QJE6 756 aaKnown RBP11.13□□□□□ -0.63
PTCD3-201ENST00000254630 EFCAB2Q5VUJ9 269 aa11.13□□□□□ -0.63
PTCD3-201ENST00000254630 CSB-PGBD3P0DP91 1061 aa11.12□□□□□ -0.63
PTCD3-201ENST00000254630 KANK4Q5T7N3 995 aaPredicted RBP11.12□□□□□ -0.63
PTCD3-201ENST00000254630 FHOD3Q2V2M9 1422 aa11.11□□□□□ -0.63
PTCD3-201ENST00000254630 RAB3GAP2Q9H2M9 1393 aa11.11□□□□□ -0.63
PTCD3-201ENST00000254630 MPHOSPH9Q99550 1183 aa11.11□□□□□ -0.63
PTCD3-201ENST00000254630 CALD1Q05682 793 aaKnown RBP11.1□□□□□ -0.63
PTCD3-201ENST00000254630 CCER2I3L3R5 266 aa11.1□□□□□ -0.63
PTCD3-201ENST00000254630 CFAP44Q96MT7 982 aa11.1□□□□□ -0.63
PTCD3-201ENST00000254630 NOP58Q9Y2X3 529 aaKnown RBP11.09□□□□□ -0.63
PTCD3-201ENST00000254630 HNRNPMP52272 730 aaKnown RBP eCLIP11.09□□□□□ -0.63
PTCD3-201ENST00000254630 PRDM2Q13029 1718 aa11.09□□□□□ -0.63
PTCD3-201ENST00000254630 PLCB2Q00722 1185 aa11.09□□□□□ -0.63
PTCD3-201ENST00000254630 B4GALNT3Q6L9W6 998 aa11.08□□□□□ -0.64
PTCD3-201ENST00000254630 IPO8O15397 1037 aaKnown RBP11.07□□□□□ -0.64
PTCD3-201ENST00000254630 RALBP1Q15311 655 aa11.07□□□□□ -0.64
PTCD3-201ENST00000254630 EID1Q9Y6B2 187 aa11.07□□□□□ -0.64
PTCD3-201ENST00000254630 CADPSQ9ULU8 1353 aa11.07□□□□□ -0.64
PTCD3-201ENST00000254630 ISY1Q9ULR0 285 aaKnown RBP11.07□□□□□ -0.64
PTCD3-201ENST00000254630 KIF3BO15066 747 aa11.06□□□□□ -0.64
PTCD3-201ENST00000254630 SPAG9O60271 1321 aaKnown RBP11.06□□□□□ -0.64
PTCD3-201ENST00000254630 CLSTN1O94985 981 aa11.06□□□□□ -0.64
PTCD3-201ENST00000254630 GOLGA6L4A6NEF3 574 aa11.06□□□□□ -0.64
PTCD3-201ENST00000254630 ITPRIPQ8IWB1 547 aa11.06□□□□□ -0.64
PTCD3-201ENST00000254630 FANCD2Q9BXW9 1451 aa11.05□□□□□ -0.64
PTCD3-201ENST00000254630 U2AF1L5P0DN76 240 aaPredicted RBP11.05□□□□□ -0.64
PTCD3-201ENST00000254630 U2AF1Q01081 240 aaKnown RBP eCLIP11.05□□□□□ -0.644e-6■■■□□ 19.2
PTCD3-201ENST00000254630 CCDC9Q9Y3X0 531 aaKnown RBP11.05□□□□□ -0.64
PTCD3-201ENST00000254630 GNL2Q13823 731 aaKnown RBP11.05□□□□□ -0.64
PTCD3-201ENST00000254630 NUTM2DQ5VT03 806 aaPredicted RBP11.05□□□□□ -0.64
PTCD3-201ENST00000254630 ZNF330Q9Y3S2 320 aaPredicted RBP11.05□□□□□ -0.64
PTCD3-201ENST00000254630 APBB1O00213 710 aa11.04□□□□□ -0.64
PTCD3-201ENST00000254630 SPRYD3Q8NCJ5 442 aa11.04□□□□□ -0.64
PTCD3-201ENST00000254630 WASHC2CQ9Y4E1 1318 aa11.04□□□□□ -0.64
PTCD3-201ENST00000254630 ATAD2BQ9ULI0 1458 aa11.03□□□□□ -0.64
PTCD3-201ENST00000254630 TMX4Q9H1E5 349 aaPredicted RBP11.03□□□□□ -0.64
PTCD3-201ENST00000254630 TERF2IPQ9NYB0 399 aa11.03□□□□□ -0.64
PTCD3-201ENST00000254630 KIAA1211Q6ZU35 1233 aa11.02□□□□□ -0.64
PTCD3-201ENST00000254630 UACAQ9BZF9 1416 aa11.02□□□□□ -0.64
PTCD3-201ENST00000254630 NRDCO43847 1150 aa11.01□□□□□ -0.65
PTCD3-201ENST00000254630 GPATCH3Q96I76 525 aa11.01□□□□□ -0.65
PTCD3-201ENST00000254630 NAP1L5Q96NT1 182 aaPredicted RBP11.01□□□□□ -0.65
PTCD3-201ENST00000254630 RSPH4AQ5TD94 716 aa11□□□□□ -0.65
PTCD3-201ENST00000254630 STK31Q9BXU1 1019 aa11□□□□□ -0.65
PTCD3-201ENST00000254630 RWDD1Q9H446 243 aaPredicted RBP11□□□□□ -0.65
PTCD3-201ENST00000254630 RCAN3Q9UKA8 241 aa11□□□□□ -0.65
PTCD3-201ENST00000254630 CHMP3Q9Y3E7 222 aa11□□□□□ -0.65
PTCD3-201ENST00000254630 NGDNQ8NEJ9 315 aaKnown RBP10.99□□□□□ -0.65
PTCD3-201ENST00000254630 DRC7Q8IY82 874 aa10.99□□□□□ -0.65
PTCD3-201ENST00000254630 PMFBP1Q8TBY8 1022 aa10.99□□□□□ -0.65
PTCD3-201ENST00000254630 TAF7LQ5H9L4 462 aa10.98□□□□□ -0.65
PTCD3-201ENST00000254630 CCDC146Q8IYE0 955 aa10.98□□□□□ -0.65
PTCD3-201ENST00000254630 CCDC144AA2RUR9 1427 aa10.98□□□□□ -0.65
PTCD3-201ENST00000254630 PTMSP20962 102 aa10.97□□□□□ -0.65
PTCD3-201ENST00000254630 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.97□□□□□ -0.65
PTCD3-201ENST00000254630 CHMP4AQ9BY43 222 aa10.97□□□□□ -0.65
PTCD3-201ENST00000254630 AMPHP49418 695 aa10.97□□□□□ -0.65
PTCD3-201ENST00000254630 ERICH6BQ5W0A0 696 aa10.97□□□□□ -0.65
PTCD3-201ENST00000254630 SMC4Q9NTJ3 1288 aa10.97□□□□□ -0.65
PTCD3-201ENST00000254630 LMOD3Q0VAK6 560 aa10.97□□□□□ -0.65
PTCD3-201ENST00000254630 GORABQ5T7V8 394 aa10.97□□□□□ -0.65
PTCD3-201ENST00000254630 KIF15Q9NS87 1388 aa10.96□□□□□ -0.65
PTCD3-201ENST00000254630 L1TD1Q5T7N2 865 aaKnown RBP10.96□□□□□ -0.65
PTCD3-201ENST00000254630 JPH4Q96JJ6 628 aa10.96□□□□□ -0.66
PTCD3-201ENST00000254630 CUX1P39880 1505 aa10.96□□□□□ -0.66
PTCD3-201ENST00000254630 HSP90B1P14625 803 aaKnown RBP10.96□□□□□ -0.66
PTCD3-201ENST00000254630 CHAF1AQ13111 956 aaPredicted RBP10.95□□□□□ -0.66
PTCD3-201ENST00000254630 PHLDB1Q86UU1 1377 aa10.95□□□□□ -0.66
PTCD3-201ENST00000254630 G3V3G9 751 aa10.95□□□□□ -0.66
PTCD3-201ENST00000254630 DCAF8Q5TAQ9 597 aa10.95□□□□□ -0.66
PTCD3-201ENST00000254630 LTV1Q96GA3 475 aaPredicted RBP10.94□□□□□ -0.66
PTCD3-201ENST00000254630 MSNP26038 577 aaKnown RBP10.94□□□□□ -0.66
PTCD3-201ENST00000254630 TRIM6-TRIM34B2RNG4 842 aa10.93□□□□□ -0.66
PTCD3-201ENST00000254630 HMMRO75330 724 aa10.93□□□□□ -0.66
PTCD3-201ENST00000254630 TRAK1Q9UPV9 953 aa10.93□□□□□ -0.66
PTCD3-201ENST00000254630 PTPRGP23470 1445 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms