RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 TSHZ2Q9NRE2 1034 aa14.28□□□□□ -0.12
COPB1-201ENST00000249923 C11orf95C9JLR9 678 aaPredicted RBP14.27□□□□□ -0.13
COPB1-201ENST00000249923 ANP32CO43423 234 aa14.27□□□□□ -0.13
COPB1-201ENST00000249923 HSPA5P11021 654 aaKnown RBP14.27□□□□□ -0.13
COPB1-201ENST00000249923 TEX14Q8IWB6 1497 aa14.27□□□□□ -0.13
COPB1-201ENST00000249923 KIF14Q15058 1648 aa14.26□□□□□ -0.13
COPB1-201ENST00000249923 PRG4Q92954 1404 aaPredicted RBP14.26□□□□□ -0.13
COPB1-201ENST00000249923 ANKRD30BQ9BXX2 1392 aa14.26□□□□□ -0.13
COPB1-201ENST00000249923 L3MBTL2Q969R5 705 aa14.25□□□□□ -0.13
COPB1-201ENST00000249923 PLB1Q6P1J6 1458 aa14.25□□□□□ -0.13
COPB1-201ENST00000249923 ROCK1Q13464 1354 aa14.25□□□□□ -0.13
COPB1-201ENST00000249923 CNGB1Q14028 1251 aaPredicted RBP14.24□□□□□ -0.13
COPB1-201ENST00000249923 RPRD2Q5VT52 1461 aaKnown RBP14.23□□□□□ -0.13
COPB1-201ENST00000249923 NBPF8Q3BBV2 869 aa14.23□□□□□ -0.13
COPB1-201ENST00000249923 FKBP8Q14318 412 aa14.23□□□□□ -0.13
COPB1-201ENST00000249923 ERICH6Q7L0X2 663 aa14.23□□□□□ -0.13
COPB1-201ENST00000249923 NEFLP07196 543 aa14.22□□□□□ -0.13
COPB1-201ENST00000249923 PZPP20742 1482 aa14.22□□□□□ -0.13
COPB1-201ENST00000249923 CCDC184Q52MB2 194 aa14.21□□□□□ -0.13
COPB1-201ENST00000249923 CAMSAP2Q08AD1 1489 aa14.21□□□□□ -0.13
COPB1-201ENST00000249923 GPATCH8Q9UKJ3 1502 aaKnown RBP14.2□□□□□ -0.14
COPB1-201ENST00000249923 CROCC2H7BZ55 1655 aa14.2□□□□□ -0.14
COPB1-201ENST00000249923 ADCY10Q96PN6 1610 aa14.19□□□□□ -0.14
COPB1-201ENST00000249923 NCOA1Q15788 1441 aa14.19□□□□□ -0.14
COPB1-201ENST00000249923 SPATA31E1Q6ZUB1 1445 aa14.19□□□□□ -0.14
COPB1-201ENST00000249923 TROQ12816 1431 aaPredicted RBP14.18□□□□□ -0.14
COPB1-201ENST00000249923 MAGI1Q96QZ7 1491 aaPredicted RBP14.17□□□□□ -0.14
COPB1-201ENST00000249923 CNTLNQ9NXG0 1405 aa14.17□□□□□ -0.14
COPB1-201ENST00000249923 ADGBQ8N7X0 1667 aa14.17□□□□□ -0.14
COPB1-201ENST00000249923 SYNJ2O15056 1496 aa14.16□□□□□ -0.14
COPB1-201ENST00000249923 MBD5Q9P267 1494 aa14.15□□□□□ -0.14
COPB1-201ENST00000249923 ITSN2Q9NZM3 1697 aa14.15□□□□□ -0.14
COPB1-201ENST00000249923 POLR1AO95602 1720 aaPredicted RBP14.15□□□□□ -0.14
COPB1-201ENST00000249923 EIF4G2P78344 907 aaKnown RBP eCLIP14.15□□□□□ -0.14
COPB1-201ENST00000249923 CCDC7Q96M83 1385 aa14.15□□□□□ -0.14
COPB1-201ENST00000249923 NUP160Q12769 1436 aa14.14□□□□□ -0.15
COPB1-201ENST00000249923 CDC42BPAQ5VT25 1732 aa14.14□□□□□ -0.15
COPB1-201ENST00000249923 ADGRL2O95490 1459 aa14.13□□□□□ -0.15
COPB1-201ENST00000249923 SLC4A1APQ9BWU0 796 aaKnown RBP14.12□□□□□ -0.15
COPB1-201ENST00000249923 BCORL1Q5H9F3 1711 aa14.12□□□□□ -0.15
COPB1-201ENST00000249923 IRX6P78412 446 aaPredicted RBP14.11□□□□□ -0.15
COPB1-201ENST00000249923 ABCA8O94911 1581 aa14.11□□□□□ -0.15
COPB1-201ENST00000249923 ERCC6Q03468 1493 aa14.11□□□□□ -0.15
COPB1-201ENST00000249923 ABCC10Q5T3U5 1492 aa14.1□□□□□ -0.15
COPB1-201ENST00000249923 KIF7Q2M1P5 1343 aa14.1□□□□□ -0.15
COPB1-201ENST00000249923 HNRNPUQ00839 825 aaKnown RBP eCLIP14.1□□□□□ -0.15
COPB1-201ENST00000249923 CFDP1Q9UEE9 299 aaPredicted RBP14.1□□□□□ -0.15
COPB1-201ENST00000249923 CHMP7Q8WUX9 453 aaPredicted RBP14.09□□□□□ -0.15
COPB1-201ENST00000249923 BCL11AQ9H165 835 aa14.09□□□□□ -0.15
COPB1-201ENST00000249923 PRKRIP1Q9H875 184 aaPredicted RBP14.09□□□□□ -0.15
COPB1-201ENST00000249923 ANP32EQ9BTT0 268 aa14.08□□□□□ -0.16
COPB1-201ENST00000249923 ATP10BO94823 1461 aa14.08□□□□□ -0.16
COPB1-201ENST00000249923 JPH4Q96JJ6 628 aa14.07□□□□□ -0.16
COPB1-201ENST00000249923 FBLN2P98095 1184 aa14.07□□□□□ -0.16
COPB1-201ENST00000249923 ZNF777Q9ULD5 760 aaPredicted RBP14.07□□□□□ -0.16
COPB1-201ENST00000249923 CDK11AQ9UQ88 783 aaPredicted RBP14.07□□□□□ -0.16
COPB1-201ENST00000249923 KIAA1107Q9UPP5 1409 aa14.06□□□□□ -0.16
COPB1-201ENST00000249923 KDM5CP41229 1560 aa14.05□□□□□ -0.16
COPB1-201ENST00000249923 DHX29Q7Z478 1369 aaKnown RBP14.04□□□□□ -0.16
COPB1-201ENST00000249923 ANKRD50Q9ULJ7 1429 aa14.03□□□□□ -0.16
COPB1-201ENST00000249923 PKD2Q13563 968 aa14.02□□□□□ -0.16
COPB1-201ENST00000249923 CARMIL2Q6F5E8 1435 aa14.02□□□□□ -0.17
COPB1-201ENST00000249923 C9orf84Q5VXU9 1444 aa14.01□□□□□ -0.17
COPB1-201ENST00000249923 SHANK2Q9UPX8 1470 aa14.01□□□□□ -0.17
COPB1-201ENST00000249923 CDC42BPBQ9Y5S2 1711 aa14□□□□□ -0.17
COPB1-201ENST00000249923 KDM5DQ9BY66 1539 aa14□□□□□ -0.17
COPB1-201ENST00000249923 ANKRD30AQ9BXX3 1397 aa14□□□□□ -0.17
COPB1-201ENST00000249923 USP47Q96K76 1375 aa13.99□□□□□ -0.17
COPB1-201ENST00000249923 SAMD9LQ8IVG5 1584 aa13.99□□□□□ -0.17
COPB1-201ENST00000249923 SENP3-EIF4A1A0A087X0R7 540 aa13.99□□□□□ -0.17
COPB1-201ENST00000249923 FAM9BQ8IZU0 186 aa13.98□□□□□ -0.17
COPB1-201ENST00000249923 PTPRGP23470 1445 aa13.97□□□□□ -0.17
COPB1-201ENST00000249923 UHRF1BP1Q6BDS2 1440 aa13.97□□□□□ -0.17
COPB1-201ENST00000249923 RBM19Q9Y4C8 960 aaKnown RBP13.97□□□□□ -0.17
COPB1-201ENST00000249923 MRS2Q9HD23 443 aa13.96□□□□□ -0.17
COPB1-201ENST00000249923 NUP155O75694 1391 aa13.96□□□□□ -0.18
COPB1-201ENST00000249923 RALGAPBQ86X10 1494 aa13.95□□□□□ -0.18
COPB1-201ENST00000249923 ARHGEF5Q12774 1597 aa13.95□□□□□ -0.18
COPB1-201ENST00000249923 ZNF326Q5BKZ1 582 aaKnown RBP13.95□□□□□ -0.18
COPB1-201ENST00000249923 HNRNPMP52272 730 aaKnown RBP eCLIP13.95□□□□□ -0.18
COPB1-201ENST00000249923 PREX2Q70Z35 1606 aa13.94□□□□□ -0.18
COPB1-201ENST00000249923 PLEKHD1A6NEE1 506 aa13.94□□□□□ -0.18
COPB1-201ENST00000249923 KIF15Q9NS87 1388 aa13.93□□□□□ -0.18
COPB1-201ENST00000249923 ZBED9Q6R2W3 1325 aa13.93□□□□□ -0.18
COPB1-201ENST00000249923 TTC37Q6PGP7 1564 aa13.93□□□□□ -0.18
COPB1-201ENST00000249923 POLR3GLQ9BT43 218 aa13.93□□□□□ -0.18
COPB1-201ENST00000249923 ARHGEF12Q9NZN5 1544 aa13.93□□□□□ -0.18
COPB1-201ENST00000249923 ERCC6L2Q5T890 1561 aa13.92□□□□□ -0.18
COPB1-201ENST00000249923 CHD1O14646 1710 aa13.92□□□□□ -0.18
COPB1-201ENST00000249923 E9PCH4 1651 aa13.91□□□□□ -0.18
COPB1-201ENST00000249923 FAM135AQ9P2D6 1515 aa13.91□□□□□ -0.18
COPB1-201ENST00000249923 SYCP2Q9BX26 1530 aa13.89□□□□□ -0.19
COPB1-201ENST00000249923 PLA2R1Q13018 1463 aa13.89□□□□□ -0.19
COPB1-201ENST00000249923 CCDC141Q6ZP82 1450 aa13.88□□□□□ -0.19
COPB1-201ENST00000249923 SHROOM2Q13796 1616 aa13.88□□□□□ -0.19
COPB1-201ENST00000249923 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.88□□□□□ -0.194e-7■■■■□ 24.7
COPB1-201ENST00000249923 MSH5O43196 834 aa13.87□□□□□ -0.19
COPB1-201ENST00000249923 NBR1Q14596 966 aa13.87□□□□□ -0.19
COPB1-201ENST00000249923 TRPM1Q7Z4N2 1603 aa13.87□□□□□ -0.19
COPB1-201ENST00000249923 UNC13BO14795 1591 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms