RNA–Protein interactions for RNA: ENST00000228918.8

LTBR-201, Transcript of lymphotoxin beta receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LTBR, Length 2,260 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-201ENST00000228918 WASHC2AQ641Q2 1341 aa22.79■■□□□ 1.24
LTBR-201ENST00000228918 RPRD2Q5VT52 1461 aaKnown RBP22.75■■□□□ 1.23
LTBR-201ENST00000228918 BCANQ96GW7 911 aa22.75■■□□□ 1.23
LTBR-201ENST00000228918 ANKRD30BQ9BXX2 1392 aa22.75■■□□□ 1.23
LTBR-201ENST00000228918 EIF4G2P78344 907 aaKnown RBP eCLIP22.74■■□□□ 1.23
LTBR-201ENST00000228918 L3MBTL2Q969R5 705 aa22.74■■□□□ 1.23
LTBR-201ENST00000228918 TEX14Q8IWB6 1497 aa22.73■■□□□ 1.23
LTBR-201ENST00000228918 NEFLP07196 543 aa22.73■■□□□ 1.23
LTBR-201ENST00000228918 FOXD1Q16676 465 aa22.72■■□□□ 1.23
LTBR-201ENST00000228918 ITSN2Q9NZM3 1697 aa22.71■■□□□ 1.23
LTBR-201ENST00000228918 ZNF644Q9H582 1327 aaPredicted RBP22.71■■□□□ 1.23
LTBR-201ENST00000228918 CNTLNQ9NXG0 1405 aa22.71■■□□□ 1.23
LTBR-201ENST00000228918 CDK11AQ9UQ88 783 aaPredicted RBP22.7■■□□□ 1.22
LTBR-201ENST00000228918 TROQ12816 1431 aaPredicted RBP22.7■■□□□ 1.22
LTBR-201ENST00000228918 ADGBQ8N7X0 1667 aa22.69■■□□□ 1.22
LTBR-201ENST00000228918 MAGI1Q96QZ7 1491 aaPredicted RBP22.69■■□□□ 1.22
LTBR-201ENST00000228918 ADCY10Q96PN6 1610 aa22.69■■□□□ 1.22
LTBR-201ENST00000228918 NCOA1Q15788 1441 aa22.69■■□□□ 1.22
LTBR-201ENST00000228918 CEP170Q5SW79 1584 aa22.68■■□□□ 1.22
LTBR-201ENST00000228918 CAMSAP2Q08AD1 1489 aa22.68■■□□□ 1.22
LTBR-201ENST00000228918 PRG4Q92954 1404 aaPredicted RBP22.66■■□□□ 1.22
LTBR-201ENST00000228918 POLR1AO95602 1720 aaPredicted RBP22.65■■□□□ 1.22
LTBR-201ENST00000228918 CROCC2H7BZ55 1655 aa22.65■■□□□ 1.22
LTBR-201ENST00000228918 CCDC7Q96M83 1385 aa22.64■■□□□ 1.21
LTBR-201ENST00000228918 PZPP20742 1482 aa22.63■■□□□ 1.21
LTBR-201ENST00000228918 KIF14Q15058 1648 aa22.63■■□□□ 1.21
LTBR-201ENST00000228918 SYNJ2O15056 1496 aa22.63■■□□□ 1.21
LTBR-201ENST00000228918 PLB1Q6P1J6 1458 aa22.63■■□□□ 1.21
LTBR-201ENST00000228918 GPATCH8Q9UKJ3 1502 aaKnown RBP22.62■■□□□ 1.21
LTBR-201ENST00000228918 NBPF8Q3BBV2 869 aa22.61■■□□□ 1.21
LTBR-201ENST00000228918 ANP32EQ9BTT0 268 aa22.61■■□□□ 1.21
LTBR-201ENST00000228918 SLC4A1APQ9BWU0 796 aaKnown RBP22.61■■□□□ 1.21
LTBR-201ENST00000228918 ADGRL2O95490 1459 aa22.61■■□□□ 1.21
LTBR-201ENST00000228918 HNRNPUQ00839 825 aaKnown RBP eCLIP22.61■■□□□ 1.21
LTBR-201ENST00000228918 C11orf95C9JLR9 678 aaPredicted RBP22.6■■□□□ 1.21
LTBR-201ENST00000228918 SPATA31E1Q6ZUB1 1445 aa22.59■■□□□ 1.21
LTBR-201ENST00000228918 CFDP1Q9UEE9 299 aaPredicted RBP22.57■■□□□ 1.2
LTBR-201ENST00000228918 ERCC6Q03468 1493 aa22.55■■□□□ 1.2
LTBR-201ENST00000228918 MBD5Q9P267 1494 aa22.55■■□□□ 1.2
LTBR-201ENST00000228918 NUP160Q12769 1436 aa22.55■■□□□ 1.2
LTBR-201ENST00000228918 CHMP7Q8WUX9 453 aaPredicted RBP22.55■■□□□ 1.2
LTBR-201ENST00000228918 CARMIL2Q6F5E8 1435 aa22.54■■□□□ 1.2
LTBR-201ENST00000228918 PRKRIP1Q9H875 184 aaPredicted RBP22.53■■□□□ 1.2
LTBR-201ENST00000228918 KIAA1107Q9UPP5 1409 aa22.52■■□□□ 1.2
LTBR-201ENST00000228918 CDC42BPAQ5VT25 1732 aa22.51■■□□□ 1.19
LTBR-201ENST00000228918 KIF7Q2M1P5 1343 aa22.5■■□□□ 1.19
LTBR-201ENST00000228918 CCDC184Q52MB2 194 aa22.5■■□□□ 1.19
LTBR-201ENST00000228918 ABCA8O94911 1581 aa22.49■■□□□ 1.19
LTBR-201ENST00000228918 ANKRD30AQ9BXX3 1397 aa22.49■■□□□ 1.19
LTBR-201ENST00000228918 SHANK2Q9UPX8 1470 aa22.46■■□□□ 1.19
LTBR-201ENST00000228918 ZNF777Q9ULD5 760 aaPredicted RBP22.46■■□□□ 1.19
LTBR-201ENST00000228918 ABCC10Q5T3U5 1492 aa22.46■■□□□ 1.19
LTBR-201ENST00000228918 JPH4Q96JJ6 628 aa22.46■■□□□ 1.19
LTBR-201ENST00000228918 ANKRD50Q9ULJ7 1429 aa22.44■■□□□ 1.18
LTBR-201ENST00000228918 FBLN2P98095 1184 aa22.43■■□□□ 1.18
LTBR-201ENST00000228918 BCL11AQ9H165 835 aa22.42■■□□□ 1.18
LTBR-201ENST00000228918 BCORL1Q5H9F3 1711 aa22.41■■□□□ 1.18
LTBR-201ENST00000228918 MRS2Q9HD23 443 aa22.41■■□□□ 1.18
LTBR-201ENST00000228918 PKD2Q13563 968 aa22.41■■□□□ 1.18
LTBR-201ENST00000228918 ATP10BO94823 1461 aa22.41■■□□□ 1.18
LTBR-201ENST00000228918 KDM5CP41229 1560 aa22.4■■□□□ 1.18
LTBR-201ENST00000228918 C9orf84Q5VXU9 1444 aa22.4■■□□□ 1.18
LTBR-201ENST00000228918 KDM5DQ9BY66 1539 aa22.4■■□□□ 1.18
LTBR-201ENST00000228918 USP47Q96K76 1375 aa22.39■■□□□ 1.17
LTBR-201ENST00000228918 PLEKHD1A6NEE1 506 aa22.38■■□□□ 1.17
LTBR-201ENST00000228918 RBM19Q9Y4C8 960 aaKnown RBP22.38■■□□□ 1.17
LTBR-201ENST00000228918 ZBED9Q6R2W3 1325 aa22.38■■□□□ 1.17
LTBR-201ENST00000228918 FAM9BQ8IZU0 186 aa22.37■■□□□ 1.17
LTBR-201ENST00000228918 UHRF1BP1Q6BDS2 1440 aa22.36■■□□□ 1.17
LTBR-201ENST00000228918 DHX29Q7Z478 1369 aaKnown RBP22.36■■□□□ 1.17
LTBR-201ENST00000228918 RALGAPBQ86X10 1494 aa22.35■■□□□ 1.17
LTBR-201ENST00000228918 ARHGEF12Q9NZN5 1544 aa22.35■■□□□ 1.17
LTBR-201ENST00000228918 IRX6P78412 446 aaPredicted RBP22.34■■□□□ 1.17
LTBR-201ENST00000228918 ERICH6BQ5W0A0 696 aa22.34■■□□□ 1.17
LTBR-201ENST00000228918 ARHGEF5Q12774 1597 aa22.34■■□□□ 1.17
LTBR-201ENST00000228918 NUP155O75694 1391 aa22.33■■□□□ 1.16
LTBR-201ENST00000228918 ARID4BQ4LE39 1312 aaPredicted RBP22.31■■□□□ 1.16
LTBR-201ENST00000228918 PTPRGP23470 1445 aa22.3■■□□□ 1.16
LTBR-201ENST00000228918 ZNF326Q5BKZ1 582 aaKnown RBP22.3■■□□□ 1.16
LTBR-201ENST00000228918 KIF15Q9NS87 1388 aa22.27■■□□□ 1.16
LTBR-201ENST00000228918 PREX2Q70Z35 1606 aa22.26■■□□□ 1.15
LTBR-201ENST00000228918 TSPY4P0CV99 314 aa22.26■■□□□ 1.15
LTBR-201ENST00000228918 TSPY10P0CW01 314 aa22.26■■□□□ 1.15
LTBR-201ENST00000228918 SAMD9LQ8IVG5 1584 aa22.25■■□□□ 1.15
LTBR-201ENST00000228918 CDC42BPBQ9Y5S2 1711 aa22.25■■□□□ 1.15
LTBR-201ENST00000228918 PPP4R2Q9NY27 417 aa22.24■■□□□ 1.15
LTBR-201ENST00000228918 ROCK2O75116 1388 aaKnown RBP22.24■■□□□ 1.15
LTBR-201ENST00000228918 CCDC141Q6ZP82 1450 aa22.23■■□□□ 1.15
LTBR-201ENST00000228918 HNRNPMP52272 730 aaKnown RBP eCLIP22.21■■□□□ 1.15
LTBR-201ENST00000228918 POLR3GLQ9BT43 218 aa22.2■■□□□ 1.14
LTBR-201ENST00000228918 CARD11Q9BXL7 1154 aa22.19■■□□□ 1.14
LTBR-201ENST00000228918 FAM135AQ9P2D6 1515 aa22.19■■□□□ 1.14
LTBR-201ENST00000228918 SMG6Q86US8 1419 aaKnown RBP22.18■■□□□ 1.14
LTBR-201ENST00000228918 E9PCH4 1651 aa22.17■■□□□ 1.14
LTBR-201ENST00000228918 MAST1Q9Y2H9 1570 aa22.15■■□□□ 1.14
LTBR-201ENST00000228918 UNC13BO14795 1591 aa22.14■■□□□ 1.13
LTBR-201ENST00000228918 SYCP2Q9BX26 1530 aa22.13■■□□□ 1.13
LTBR-201ENST00000228918 TRPM1Q7Z4N2 1603 aa22.12■■□□□ 1.13
LTBR-201ENST00000228918 TTC37Q6PGP7 1564 aa22.12■■□□□ 1.13
LTBR-201ENST00000228918 RSPH4AQ5TD94 716 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms