RNA–Protein interactions for RNA: ENST00000225964.9

COL1A1-201, Transcript of collagen type I alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL1A1, Length 6,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-201ENST00000225964 APBB1O00213 710 aa16.9■□□□□ 0.3
COL1A1-201ENST00000225964 SPRYD3Q8NCJ5 442 aa16.9■□□□□ 0.3
COL1A1-201ENST00000225964 DRC7Q8IY82 874 aa16.89■□□□□ 0.29
COL1A1-201ENST00000225964 HDGFL2Q7Z4V5 671 aaPredicted RBP16.89■□□□□ 0.29
COL1A1-201ENST00000225964 CEP164Q9UPV0 1460 aa16.87■□□□□ 0.29
COL1A1-201ENST00000225964 PPP4R2Q9NY27 417 aa16.86■□□□□ 0.29
COL1A1-201ENST00000225964 G3V3G9 751 aa16.83■□□□□ 0.28
COL1A1-201ENST00000225964 DCAF8Q5TAQ9 597 aa16.83■□□□□ 0.28
COL1A1-201ENST00000225964 CHMP3Q9Y3E7 222 aa16.82■□□□□ 0.28
COL1A1-201ENST00000225964 KIAA1211Q6ZU35 1233 aa16.82■□□□□ 0.28
COL1A1-201ENST00000225964 AMER1Q5JTC6 1135 aaPredicted RBP16.81■□□□□ 0.28
COL1A1-201ENST00000225964 RTN4Q9NQC3 1192 aaKnown RBP16.81■□□□□ 0.28
COL1A1-201ENST00000225964 KIAA2012Q0VF49 1180 aa16.81■□□□□ 0.28
COL1A1-201ENST00000225964 CHAF1AQ13111 956 aaPredicted RBP16.81■□□□□ 0.28
COL1A1-201ENST00000225964 ERICH6BQ5W0A0 696 aa16.81■□□□□ 0.28
COL1A1-201ENST00000225964 PRM3Q9NNZ6 103 aa16.81■□□□□ 0.28
COL1A1-201ENST00000225964 B4GALNT3Q6L9W6 998 aa16.8■□□□□ 0.28
COL1A1-201ENST00000225964 TAF7LQ5H9L4 462 aa16.79■□□□□ 0.28
COL1A1-201ENST00000225964 NOP58Q9Y2X3 529 aaKnown RBP16.79■□□□□ 0.28
COL1A1-201ENST00000225964 GORABQ5T7V8 394 aa16.78■□□□□ 0.28
COL1A1-201ENST00000225964 L1TD1Q5T7N2 865 aaKnown RBP16.77■□□□□ 0.27
COL1A1-201ENST00000225964 FHAD1B1AJZ9 1412 aa16.76■□□□□ 0.27
COL1A1-201ENST00000225964 CFAP44Q96MT7 982 aa16.76■□□□□ 0.27
COL1A1-201ENST00000225964 MSNP26038 577 aaKnown RBP16.74■□□□□ 0.27
COL1A1-201ENST00000225964 ITPRIPQ8IWB1 547 aa16.74■□□□□ 0.27
COL1A1-201ENST00000225964 IPO8O15397 1037 aaKnown RBP16.74■□□□□ 0.27
COL1A1-201ENST00000225964 TNIKQ9UKE5 1360 aa16.74■□□□□ 0.27
COL1A1-201ENST00000225964 NOC3LQ8WTT2 800 aaKnown RBP16.74■□□□□ 0.27
COL1A1-201ENST00000225964 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.73■□□□□ 0.27
COL1A1-201ENST00000225964 KTN1Q86UP2 1357 aaKnown RBP16.73■□□□□ 0.27
COL1A1-201ENST00000225964 U2AF1L5P0DN76 240 aaPredicted RBP16.73■□□□□ 0.27
COL1A1-201ENST00000225964 HSP90B1P14625 803 aaKnown RBP16.73■□□□□ 0.27
COL1A1-201ENST00000225964 U2AF1Q01081 240 aaKnown RBP eCLIP16.73■□□□□ 0.27
COL1A1-201ENST00000225964 CUX2O14529 1486 aa16.73■□□□□ 0.27
COL1A1-201ENST00000225964 CALD1Q05682 793 aaKnown RBP16.73■□□□□ 0.27
COL1A1-201ENST00000225964 NACADO15069 1562 aa16.72■□□□□ 0.27
COL1A1-201ENST00000225964 ROCK2O75116 1388 aaKnown RBP16.72■□□□□ 0.27
COL1A1-201ENST00000225964 SPAG9O60271 1321 aaKnown RBP16.72■□□□□ 0.27
COL1A1-201ENST00000225964 PDE4CQ08493 712 aa16.71■□□□□ 0.27
COL1A1-201ENST00000225964 FOXD1Q16676 465 aa16.71■□□□□ 0.27
COL1A1-201ENST00000225964 MYO15BQ96JP2 1530 aa16.71■□□□□ 0.27
COL1A1-201ENST00000225964 PKD2Q13563 968 aa16.7■□□□□ 0.26
COL1A1-201ENST00000225964 GPATCH3Q96I76 525 aa16.7■□□□□ 0.26
COL1A1-201ENST00000225964 CARMIL1Q5VZK9 1371 aa16.7■□□□□ 0.26
COL1A1-201ENST00000225964 NUTM2DQ5VT03 806 aaPredicted RBP16.69■□□□□ 0.26
COL1A1-201ENST00000225964 ARHGAP35Q9NRY4 1499 aa16.69■□□□□ 0.26
COL1A1-201ENST00000225964 EID1Q9Y6B2 187 aa16.69■□□□□ 0.26
COL1A1-201ENST00000225964 STK31Q9BXU1 1019 aa16.69■□□□□ 0.26
COL1A1-201ENST00000225964 HSPA5P11021 654 aaKnown RBP16.68■□□□□ 0.26
COL1A1-201ENST00000225964 CARMIL2Q6F5E8 1435 aa16.68■□□□□ 0.26
COL1A1-201ENST00000225964 TRIM6-TRIM34B2RNG4 842 aa16.67■□□□□ 0.26
COL1A1-201ENST00000225964 NGDNQ8NEJ9 315 aaKnown RBP16.67■□□□□ 0.26
COL1A1-201ENST00000225964 VPS53Q5VIR6 699 aa16.66■□□□□ 0.26
COL1A1-201ENST00000225964 LTV1Q96GA3 475 aaPredicted RBP16.66■□□□□ 0.26
COL1A1-201ENST00000225964 FRAT2O75474 233 aaPredicted RBP16.65■□□□□ 0.26
COL1A1-201ENST00000225964 RASSF8Q8NHQ8 419 aa16.65■□□□□ 0.26
COL1A1-201ENST00000225964 HTATSF1O43719 755 aaKnown RBP16.65■□□□□ 0.26
COL1A1-201ENST00000225964 SLC4A10Q6U841 1118 aa16.64■□□□□ 0.26
COL1A1-201ENST00000225964 GTF2E1P29083 439 aaPredicted RBP16.64■□□□□ 0.25
COL1A1-201ENST00000225964 EIF3AQ14152 1382 aaKnown RBP16.64■□□□□ 0.25
COL1A1-201ENST00000225964 CREBRFQ8IUR6 639 aa16.63■□□□□ 0.25
COL1A1-201ENST00000225964 TPM4P67936 248 aa16.63■□□□□ 0.25
COL1A1-201ENST00000225964 AMPHP49418 695 aa16.63■□□□□ 0.25
COL1A1-201ENST00000225964 NUTM2FA1L443 756 aa16.62■□□□□ 0.25
COL1A1-201ENST00000225964 TOMM22Q9NS69 142 aa16.62■□□□□ 0.25
COL1A1-201ENST00000225964 RWDD1Q9H446 243 aaPredicted RBP16.61■□□□□ 0.25
COL1A1-201ENST00000225964 MSH5O43196 834 aa16.61■□□□□ 0.25
COL1A1-201ENST00000225964 ANO8Q9HCE9 1232 aaPredicted RBP16.6■□□□□ 0.25
COL1A1-201ENST00000225964 SETD5Q9C0A6 1442 aa16.6■□□□□ 0.25
COL1A1-201ENST00000225964 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.6■□□□□ 0.25
COL1A1-201ENST00000225964 GBP4Q96PP9 640 aa16.59■□□□□ 0.25
COL1A1-201ENST00000225964 SMC4Q9NTJ3 1288 aa16.59■□□□□ 0.25
COL1A1-201ENST00000225964 KIF3BO15066 747 aa16.59■□□□□ 0.25
COL1A1-201ENST00000225964 MARCH6O60337 910 aa16.59■□□□□ 0.25
COL1A1-201ENST00000225964 CHMP4AQ9BY43 222 aa16.59■□□□□ 0.25
COL1A1-201ENST00000225964 NOL8Q76FK4 1167 aaKnown RBP16.59■□□□□ 0.25
COL1A1-201ENST00000225964 EFCAB2Q5VUJ9 269 aa16.59■□□□□ 0.25
COL1A1-201ENST00000225964 TERF2IPQ9NYB0 399 aa16.58■□□□□ 0.24
COL1A1-201ENST00000225964 NUP155O75694 1391 aa16.58■□□□□ 0.24
COL1A1-201ENST00000225964 A0A0U1RQG5 324 aaPredicted RBP16.57■□□□□ 0.24
COL1A1-201ENST00000225964 MFAP1P55081 439 aaKnown RBP16.57■□□□□ 0.24
COL1A1-201ENST00000225964 CCDC146Q8IYE0 955 aa16.57■□□□□ 0.24
COL1A1-201ENST00000225964 PTMSP20962 102 aa16.57■□□□□ 0.24
COL1A1-201ENST00000225964 EVA1CP58658 441 aa16.57■□□□□ 0.24
COL1A1-201ENST00000225964 GZF1Q9H116 711 aaPredicted RBP16.57■□□□□ 0.24
COL1A1-201ENST00000225964 BAZ1AQ9NRL2 1556 aaPredicted RBP16.56■□□□□ 0.24
COL1A1-201ENST00000225964 HMMRO75330 724 aa16.55■□□□□ 0.24
COL1A1-201ENST00000225964 RCAN3Q9UKA8 241 aa16.55■□□□□ 0.24
COL1A1-201ENST00000225964 PMFBP1Q8TBY8 1022 aa16.55■□□□□ 0.24
COL1A1-201ENST00000225964 WASHC2CQ9Y4E1 1318 aa16.55■□□□□ 0.24
COL1A1-201ENST00000225964 CCDC34Q96HJ3 373 aa16.55■□□□□ 0.24
COL1A1-201ENST00000225964 HDAC5Q9UQL6 1122 aa16.55■□□□□ 0.24
COL1A1-201ENST00000225964 HNRNPMP52272 730 aaKnown RBP eCLIP16.54■□□□□ 0.24
COL1A1-201ENST00000225964 SYAP1Q96A49 352 aaPredicted RBP16.54■□□□□ 0.24
COL1A1-201ENST00000225964 MEX3CQ5U5Q3 659 aaKnown RBP16.54■□□□□ 0.24
COL1A1-201ENST00000225964 ANKRD30AQ9BXX3 1397 aa16.54■□□□□ 0.24
COL1A1-201ENST00000225964 RALBP1Q15311 655 aa16.53■□□□□ 0.24
COL1A1-201ENST00000225964 FOXD4L1Q9NU39 408 aa16.52■□□□□ 0.24
COL1A1-201ENST00000225964 SLKQ9H2G2 1235 aaPredicted RBP16.52■□□□□ 0.24
COL1A1-201ENST00000225964 ARID3AQ99856 593 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms