RNA–Protein interactions for RNA: YLR260W

LCB5, Transcript of Minor sphingoid long-chain base kinase, yeastyeast

Gene LCB5, Length 2,064 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LCB5YLR260W TRM2P33753 639 aa3.58□□□□□ -1.84
LCB5YLR260W NNK1P36003 928 aa3.58□□□□□ -1.84
LCB5YLR260W YKR078WP36158 585 aaKnown RBP3.58□□□□□ -1.84
LCB5YLR260W MET28P40573 187 aa3.58□□□□□ -1.84
LCB5YLR260W CHS6P40955 746 aa3.58□□□□□ -1.84
LCB5YLR260W GLO1P50107 326 aa3.58□□□□□ -1.84
LCB5YLR260W NOG2P53742 486 aaKnown RBP3.58□□□□□ -1.84
LCB5YLR260W SSL1Q04673 461 aaPredicted RBP3.58□□□□□ -1.84
LCB5YLR260W TLG2Q08144 397 aa3.58□□□□□ -1.84
LCB5YLR260W UBX3Q12229 455 aa3.58□□□□□ -1.84
LCB5YLR260W MRPL23Q12487 163 aaPredicted RBP3.58□□□□□ -1.84
LCB5YLR260W YIL002W-AQ3E7Z5 69 aa3.58□□□□□ -1.84
LCB5YLR260W ARG80P07249 177 aa3.58□□□□□ -1.84
LCB5YLR260W GPA1P08539 472 aa3.58□□□□□ -1.84
LCB5YLR260W STE11P23561 717 aa3.58□□□□□ -1.84
LCB5YLR260W PAP1P29468 568 aaKnown RBP3.58□□□□□ -1.84
LCB5YLR260W YBR056WP38081 501 aa3.58□□□□□ -1.84
LCB5YLR260W FSH1P38777 243 aaKnown RBP3.58□□□□□ -1.84
LCB5YLR260W YER158CP40095 573 aa3.58□□□□□ -1.84
LCB5YLR260W MOB1P40484 314 aa3.58□□□□□ -1.84
LCB5YLR260W IST3P40565 148 aaPredicted RBP3.58□□□□□ -1.84
LCB5YLR260W MMM1P41800 426 aa3.58□□□□□ -1.84
LCB5YLR260W DCP2P53550 970 aaKnown RBP3.58□□□□□ -1.84
LCB5YLR260W LEE1Q02799 301 aaKnown RBP3.58□□□□□ -1.84
LCB5YLR260W RCO1Q04779 684 aa3.58□□□□□ -1.84
LCB5YLR260W TRI1Q05024 226 aa3.58□□□□□ -1.84
LCB5YLR260W IRC10Q08118 586 aa3.58□□□□□ -1.84
LCB5YLR260W ACM1Q08981 209 aa3.58□□□□□ -1.84
LCB5YLR260W LEU9Q12166 604 aaKnown RBP3.58□□□□□ -1.84
LCB5YLR260W RPS9AO13516 197 aaKnown RBP3.57□□□□□ -1.84
LCB5YLR260W GAL80P04387 435 aa3.57□□□□□ -1.84
LCB5YLR260W ATP1P07251 545 aaKnown RBP3.57□□□□□ -1.84
LCB5YLR260W PRP6P19735 899 aaPredicted RBP3.57□□□□□ -1.84
LCB5YLR260W PDE1P22434 369 aa3.57□□□□□ -1.84
LCB5YLR260W ERG6P25087 383 aaKnown RBP3.57□□□□□ -1.84
LCB5YLR260W PSO2P30620 661 aa3.57□□□□□ -1.84
LCB5YLR260W SEF1P34228 1148 aa3.57□□□□□ -1.84
LCB5YLR260W WSS1P38838 269 aa3.57□□□□□ -1.84
LCB5YLR260W SKN7P38889 622 aa3.57□□□□□ -1.84
LCB5YLR260W REV7P38927 245 aa3.57□□□□□ -1.84
LCB5YLR260W BDH2P39713 417 aa3.57□□□□□ -1.84
LCB5YLR260W CAK1P43568 368 aaPredicted RBP3.57□□□□□ -1.84
LCB5YLR260W YPT11P48559 417 aa3.57□□□□□ -1.84
LCB5YLR260W TIM8P57744 87 aa3.57□□□□□ -1.84
LCB5YLR260W REG1Q00816 1014 aa3.57□□□□□ -1.84
LCB5YLR260W YPS7Q06325 596 aa3.57□□□□□ -1.84
LCB5YLR260W DCI1Q08558 271 aa3.57□□□□□ -1.84
LCB5YLR260W YOR352WQ08816 343 aa3.57□□□□□ -1.84
LCB5YLR260W RPL6BP05739 176 aaKnown RBP3.56□□□□□ -1.84
LCB5YLR260W CHS1P08004 1131 aa3.56□□□□□ -1.84
LCB5YLR260W TY2A-LR1P0C2J4 438 aa3.56□□□□□ -1.84
LCB5YLR260W TY2A-FP0CX61 438 aa3.56□□□□□ -1.84
LCB5YLR260W TY2A-GR2P0CX62 438 aa3.56□□□□□ -1.84
LCB5YLR260W MAS1P10507 462 aa3.56□□□□□ -1.84
LCB5YLR260W TAL1P15019 335 aaKnown RBP3.56□□□□□ -1.84
LCB5YLR260W PRP2P20095 876 aaPredicted RBP3.56□□□□□ -1.84
LCB5YLR260W TY2A-CP25383 438 aa3.56□□□□□ -1.84
LCB5YLR260W TPO5P36029 618 aa3.56□□□□□ -1.84
LCB5YLR260W CUE2P36075 443 aaKnown RBP3.56□□□□□ -1.84
LCB5YLR260W LIN1P38852 340 aaPredicted RBP3.56□□□□□ -1.84
LCB5YLR260W YER130CP39959 443 aa3.56□□□□□ -1.84
LCB5YLR260W MMF1P40185 145 aaKnown RBP3.56□□□□□ -1.84
LCB5YLR260W SDS3P40505 327 aa3.56□□□□□ -1.84
LCB5YLR260W CGR1P53188 120 aa3.56□□□□□ -1.84
LCB5YLR260W YGR111WP53265 400 aa3.56□□□□□ -1.84
LCB5YLR260W RHO5P53879 331 aaKnown RBP3.56□□□□□ -1.84
LCB5YLR260W AQR1P53943 586 aa3.56□□□□□ -1.84
LCB5YLR260W RPA49Q01080 415 aaPredicted RBP3.56□□□□□ -1.84
LCB5YLR260W RPL6AQ02326 176 aaKnown RBP3.56□□□□□ -1.84
LCB5YLR260W TY2A-DR2Q03483 438 aa3.56□□□□□ -1.84
LCB5YLR260W HER2Q03557 464 aa3.56□□□□□ -1.84
LCB5YLR260W YMR210WQ03649 449 aa3.56□□□□□ -1.84
LCB5YLR260W SOV1Q04748 898 aa3.56□□□□□ -1.84
LCB5YLR260W RTN1Q04947 295 aaKnown RBP3.56□□□□□ -1.84
LCB5YLR260W AFT2Q08957 416 aa3.56□□□□□ -1.84
LCB5YLR260W LSP1Q12230 341 aaKnown RBP3.56□□□□□ -1.84
LCB5YLR260W TY2A-BQ12260 438 aa3.56□□□□□ -1.84
LCB5YLR260W TY2A-OR2Q12293 438 aa3.56□□□□□ -1.84
LCB5YLR260W LDB17Q12342 491 aa3.56□□□□□ -1.84
LCB5YLR260W TY2A-DR1Q12392 438 aa3.56□□□□□ -1.84
LCB5YLR260W TY2A-OR1Q12439 438 aa3.56□□□□□ -1.84
LCB5YLR260W YBL111CQ3E7Y5 667 aa3.56□□□□□ -1.84
LCB5YLR260W BRR1Q99177 341 aaPredicted RBP3.56□□□□□ -1.84
LCB5YLR260W TY2A-DR3Q99303 438 aa3.56□□□□□ -1.84
LCB5YLR260W DDP1Q99321 188 aaKnown RBP3.56□□□□□ -1.84
LCB5YLR260W URA3P03962 267 aa3.56□□□□□ -1.84
LCB5YLR260W RPS4AP0CX35 261 aaKnown RBP3.56□□□□□ -1.84
LCB5YLR260W RPS4BP0CX36 261 aaKnown RBP3.56□□□□□ -1.84
LCB5YLR260W CHS2P14180 963 aa3.56□□□□□ -1.84
LCB5YLR260W KSS1P14681 368 aa3.56□□□□□ -1.84
LCB5YLR260W RRT12P25381 491 aa3.56□□□□□ -1.84
LCB5YLR260W MRPL37P36532 105 aa3.56□□□□□ -1.84
LCB5YLR260W TAT1P38085 619 aa3.56□□□□□ -1.84
LCB5YLR260W MNL1P38888 796 aa3.56□□□□□ -1.84
LCB5YLR260W SET5P38890 526 aaKnown RBP3.56□□□□□ -1.84
LCB5YLR260W MPT5P39016 859 aaKnown RBP RIP-Chip data3.56□□□□□ -1.84not detected
LCB5YLR260W YHB1P39676 399 aaKnown RBP3.56□□□□□ -1.84
LCB5YLR260W ASG1P40467 964 aa3.56□□□□□ -1.84
LCB5YLR260W CAB2P40506 365 aa3.56□□□□□ -1.84
LCB5YLR260W BUD8P41698 603 aa3.56□□□□□ -1.84
Retrieved 100 of 5,963 RNA–protein pairs in 29.8 ms