RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEP1	YAL013W	COX13	P32799	129 aa		13.79	□□□□□ -0.2
DEP1	YAL013W	CAF4	P36130	643 aa		13.79	□□□□□ -0.2
DEP1	YAL013W	RPF2	P36160	344 aa	Known RBP	13.79	□□□□□ -0.2
DEP1	YAL013W	YBL029W	P38201	376 aa		13.79	□□□□□ -0.2
DEP1	YAL013W	TAE1	P38340	232 aa		13.79	□□□□□ -0.2
DEP1	YAL013W	PIK1	P39104	1066 aa		13.79	□□□□□ -0.2
DEP1	YAL013W	MPS2	P53159	387 aa		13.79	□□□□□ -0.2
DEP1	YAL013W	PRO2	P54885	456 aa	Known RBP	13.79	□□□□□ -0.2
DEP1	YAL013W	ARX1	Q03862	593 aa	Known RBP	13.79	□□□□□ -0.2
DEP1	YAL013W	EMI1	Q04406	187 aa		13.79	□□□□□ -0.2
DEP1	YAL013W	RAD34	Q06665	692 aa		13.79	□□□□□ -0.2
DEP1	YAL013W	GRS2	Q06817	618 aa		13.79	□□□□□ -0.2
DEP1	YAL013W	STE3	P06783	470 aa		13.78	□□□□□ -0.2
DEP1	YAL013W	SDH3	P33421	198 aa		13.78	□□□□□ -0.2
DEP1	YAL013W	RMA1	P36001	430 aa	Known RBP	13.78	□□□□□ -0.2
DEP1	YAL013W	SEC27	P41811	889 aa	Known RBP	13.78	□□□□□ -0.2
DEP1	YAL013W	YDR476C	Q03362	224 aa		13.78	□□□□□ -0.2
DEP1	YAL013W	VHS1	Q03785	461 aa		13.78	□□□□□ -0.2
DEP1	YAL013W	UAF30	Q08747	228 aa		13.78	□□□□□ -0.2
DEP1	YAL013W	VPS68	Q12016	184 aa		13.78	□□□□□ -0.2
DEP1	YAL013W	MEX67	Q99257	599 aa	Known RBP	13.78	□□□□□ -0.2
DEP1	YAL013W	SAS5	Q99314	248 aa		13.78	□□□□□ -0.2
DEP1	YAL013W	ATP6	P00854	259 aa		13.77	□□□□□ -0.21
DEP1	YAL013W	HXK2	P04807	486 aa	Known RBP	13.77	□□□□□ -0.21
DEP1	YAL013W	OCA4	P25366	362 aa		13.77	□□□□□ -0.21
DEP1	YAL013W	ATP11	P32453	318 aa		13.77	□□□□□ -0.21
DEP1	YAL013W	MED8	P38304	223 aa		13.77	□□□□□ -0.21
DEP1	YAL013W	YEL073C	P39974	107 aa		13.77	□□□□□ -0.21
DEP1	YAL013W	PTR3	P43606	678 aa		13.77	□□□□□ -0.21
DEP1	YAL013W	YPT32	P51996	222 aa	Known RBP	13.77	□□□□□ -0.21
DEP1	YAL013W	YGR015C	P53208	328 aa		13.77	□□□□□ -0.21
DEP1	YAL013W	YGR053C	P53234	283 aa		13.77	□□□□□ -0.21
DEP1	YAL013W	PRP38	Q00723	242 aa	Predicted RBP	13.77	□□□□□ -0.21
DEP1	YAL013W	ACL4	Q03771	387 aa		13.77	□□□□□ -0.21
DEP1	YAL013W	RRP42	Q12277	265 aa	Predicted RBP	13.77	□□□□□ -0.21
DEP1	YAL013W	BEM2	P39960	2167 aa	Known RBP	13.76	□□□□□ -0.21
DEP1	YAL013W	ATP2	P00830	511 aa	Known RBP	13.76	□□□□□ -0.21
DEP1	YAL013W	AI3	P03877	415 aa		13.76	□□□□□ -0.21
DEP1	YAL013W	CLN2	P20438	545 aa		13.76	□□□□□ -0.21
DEP1	YAL013W	SAN1	P22470	610 aa		13.76	□□□□□ -0.21
DEP1	YAL013W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	13.76	□□□□□ -0.21	not detected
DEP1	YAL013W	DMA1	P38823	416 aa		13.76	□□□□□ -0.21
DEP1	YAL013W	JEM1	P40358	645 aa		13.76	□□□□□ -0.21
DEP1	YAL013W	YGL176C	P46945	554 aa		13.76	□□□□□ -0.21
DEP1	YAL013W	BIO5	P53744	561 aa	Known RBP	13.76	□□□□□ -0.21
DEP1	YAL013W	SDH1	Q00711	640 aa		13.76	□□□□□ -0.21
DEP1	YAL013W	YDR124W	Q04608	324 aa		13.76	□□□□□ -0.21
DEP1	YAL013W	TRM8	Q12009	286 aa		13.76	□□□□□ -0.21
DEP1	YAL013W	TUB1	P09733	447 aa	Known RBP	13.75	□□□□□ -0.21
DEP1	YAL013W	PHO81	P17442	1178 aa		13.75	□□□□□ -0.21
DEP1	YAL013W	SPF1	P39986	1215 aa	Known RBP	13.75	□□□□□ -0.21
DEP1	YAL013W	LSM5	P40089	93 aa	Known RBP	13.75	□□□□□ -0.21
DEP1	YAL013W	YNR014W	P53719	212 aa		13.75	□□□□□ -0.21
DEP1	YAL013W	ARC35	P53731	342 aa	Known RBP	13.75	□□□□□ -0.21
DEP1	YAL013W	ARG7	Q04728	441 aa		13.75	□□□□□ -0.21
DEP1	YAL013W	PSR1	Q07800	427 aa		13.75	□□□□□ -0.21
DEP1	YAL013W	OPI10	Q08202	246 aa		13.75	□□□□□ -0.21
DEP1	YAL013W	MHT1	Q12525	324 aa		13.75	□□□□□ -0.21
DEP1	YAL013W	STT4	P37297	1900 aa		13.74	□□□□□ -0.21
DEP1	YAL013W	REC107	P21651	314 aa		13.74	□□□□□ -0.21
DEP1	YAL013W	MEF1	P25039	761 aa		13.74	□□□□□ -0.21
DEP1	YAL013W	CCR4	P31384	837 aa	Known RBP	13.74	□□□□□ -0.21
DEP1	YAL013W	GIP4	P39732	760 aa		13.74	□□□□□ -0.21
DEP1	YAL013W	YJR149W	P47177	404 aa		13.74	□□□□□ -0.21
DEP1	YAL013W	MPS1	P54199	764 aa		13.74	□□□□□ -0.21
DEP1	YAL013W	AAT1	Q01802	451 aa		13.74	□□□□□ -0.21
DEP1	YAL013W	SMA1	Q02651	245 aa		13.74	□□□□□ -0.21
DEP1	YAL013W	GGA1	Q06336	557 aa		13.74	□□□□□ -0.21
DEP1	YAL013W	BCP1	Q06338	283 aa		13.74	□□□□□ -0.21
DEP1	YAL013W	IOC2	Q12072	812 aa		13.74	□□□□□ -0.21
DEP1	YAL013W	NAG1	Q8TGN9	163 aa		13.74	□□□□□ -0.21
DEP1	YAL013W	HTA2	P04912	132 aa		13.73	□□□□□ -0.21
DEP1	YAL013W	PDC5	P16467	563 aa	Known RBP	13.73	□□□□□ -0.21
DEP1	YAL013W	CIN8	P27895	1000 aa		13.73	□□□□□ -0.21
DEP1	YAL013W	GIP1	P38229	639 aa		13.73	□□□□□ -0.21
DEP1	YAL013W	HPM1	P40481	377 aa		13.73	□□□□□ -0.21
DEP1	YAL013W	MAM33	P40513	266 aa		13.73	□□□□□ -0.21
DEP1	YAL013W	MDJ2	P42834	146 aa		13.73	□□□□□ -0.21
DEP1	YAL013W	MPS3	P47069	682 aa		13.73	□□□□□ -0.21
DEP1	YAL013W	ILM1	P47155	203 aa		13.73	□□□□□ -0.21
DEP1	YAL013W	MTR3	P48240	250 aa	Predicted RBP	13.73	□□□□□ -0.21
DEP1	YAL013W	MDM34	P53083	459 aa		13.73	□□□□□ -0.21
DEP1	YAL013W	ECM9	Q02202	377 aa		13.73	□□□□□ -0.21
DEP1	YAL013W	ECM11	Q04110	302 aa		13.73	□□□□□ -0.21
DEP1	YAL013W	DYN3	Q04949	312 aa		13.73	□□□□□ -0.21
DEP1	YAL013W	SGT1	Q08446	395 aa		13.73	□□□□□ -0.21
DEP1	YAL013W	NSL1	Q12143	216 aa		13.73	□□□□□ -0.21
DEP1	YAL013W	JLP1	Q12358	412 aa		13.73	□□□□□ -0.21
DEP1	YAL013W	YKL018C-A	Q3E7A7	99 aa		13.73	□□□□□ -0.21
DEP1	YAL013W	CSM1	P25651	190 aa		13.72	□□□□□ -0.21
DEP1	YAL013W	ZIP1	P31111	875 aa		13.72	□□□□□ -0.21
DEP1	YAL013W	RML2	P32611	393 aa		13.72	□□□□□ -0.21
DEP1	YAL013W	PPX1	P38698	397 aa		13.72	□□□□□ -0.21
DEP1	YAL013W	YHR127W	P38833	243 aa	Known RBP	13.72	□□□□□ -0.21
DEP1	YAL013W	ARB1	P40024	610 aa	Known RBP	13.72	□□□□□ -0.21
DEP1	YAL013W	PFA3	P42836	336 aa		13.72	□□□□□ -0.21
DEP1	YAL013W	BIR1	P47134	954 aa		13.72	□□□□□ -0.21
DEP1	YAL013W	DIA3	P52290	468 aa		13.72	□□□□□ -0.21
DEP1	YAL013W	YPL113C	Q02961	396 aa		13.72	□□□□□ -0.21
DEP1	YAL013W	YMR034C	Q05131	434 aa	Predicted RBP	13.72	□□□□□ -0.21

Retrieved 100 of 5,963 RNA–protein pairs in 66.3 ms