RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 GPKOWQ92917 476 aaPredicted RBP eCLIP17.29■□□□□ 0.36
NUP54-213ENST00000513352 COA7Q96BR5 231 aa17.29■□□□□ 0.36
NUP54-213ENST00000513352 DDX11Q96FC9 970 aa17.29■□□□□ 0.36
NUP54-213ENST00000513352 ERO1AQ96HE7 468 aa17.29■□□□□ 0.36
NUP54-213ENST00000513352 TRERF1Q96PN7 1200 aa17.29■□□□□ 0.36
NUP54-213ENST00000513352 RNF26Q9BY78 433 aaPredicted RBP17.29■□□□□ 0.36
NUP54-213ENST00000513352 ARHGAP39Q9C0H5 1083 aa17.29■□□□□ 0.36
NUP54-213ENST00000513352 RBM27Q9P2N5 1060 aaKnown RBP17.29■□□□□ 0.36
NUP54-213ENST00000513352 PCDHA1Q9Y5I3 950 aa17.29■□□□□ 0.36
NUP54-213ENST00000513352 ABCB11O95342 1321 aa17.28■□□□□ 0.36
NUP54-213ENST00000513352 K7ELQ4 463 aaPredicted RBP17.28■□□□□ 0.36
NUP54-213ENST00000513352 PRPF3O43395 683 aaKnown RBP17.28■□□□□ 0.36
NUP54-213ENST00000513352 LBX1P52954 281 aa17.28■□□□□ 0.36
NUP54-213ENST00000513352 MUM1L1Q5H9M0 696 aa17.28■□□□□ 0.36
NUP54-213ENST00000513352 PLEKHH3Q7Z736 793 aa17.28■□□□□ 0.36
NUP54-213ENST00000513352 SHCBP1Q8NEM2 672 aa17.28■□□□□ 0.36
NUP54-213ENST00000513352 MROH8Q9H579 483 aa17.28■□□□□ 0.36
NUP54-213ENST00000513352 ACAD9Q9H845 621 aa17.28■□□□□ 0.36
NUP54-213ENST00000513352 ORC3Q9UBD5 711 aaPredicted RBP17.28■□□□□ 0.36
NUP54-213ENST00000513352 FBXO40Q9UH90 709 aa17.28■□□□□ 0.36
NUP54-213ENST00000513352 DOCK3Q8IZD9 2030 aa17.27■□□□□ 0.36
NUP54-213ENST00000513352 JAK2O60674 1132 aa17.27■□□□□ 0.36
NUP54-213ENST00000513352 CTDNEP1O95476 244 aa17.27■□□□□ 0.36
NUP54-213ENST00000513352 SCG2P13521 617 aa17.27■□□□□ 0.36
NUP54-213ENST00000513352 NOM1Q5C9Z4 860 aaKnown RBP17.27■□□□□ 0.36
NUP54-213ENST00000513352 NSMFQ6X4W1 530 aa17.27■□□□□ 0.36
NUP54-213ENST00000513352 GPR142Q7Z601 462 aa17.27■□□□□ 0.36
NUP54-213ENST00000513352 NSUN7Q8NE18 718 aaKnown RBP17.27■□□□□ 0.36
NUP54-213ENST00000513352 CHST13Q8NET6 341 aa17.27■□□□□ 0.36
NUP54-213ENST00000513352 SNX21Q969T3 373 aa17.27■□□□□ 0.36
NUP54-213ENST00000513352 MMP19Q99542 508 aa17.27■□□□□ 0.36
NUP54-213ENST00000513352 MRPL11Q9Y3B7 192 aaKnown RBP17.27■□□□□ 0.36
NUP54-213ENST00000513352 RBBP6Q7Z6E9 1792 aaKnown RBP17.27■□□□□ 0.35
NUP54-213ENST00000513352 DEXIO95424 95 aa17.26■□□□□ 0.35
NUP54-213ENST00000513352 FCER1AP12319 257 aa17.26■□□□□ 0.35
NUP54-213ENST00000513352 FOSBP53539 338 aa17.26■□□□□ 0.35
NUP54-213ENST00000513352 NAPAP54920 295 aa17.26■□□□□ 0.35
NUP54-213ENST00000513352 ARHGEF6Q15052 776 aa17.26■□□□□ 0.35
NUP54-213ENST00000513352 PFKFB3Q16875 520 aaPredicted RBP17.26■□□□□ 0.35
NUP54-213ENST00000513352 WWC2Q6AWC2 1192 aa17.26■□□□□ 0.35
NUP54-213ENST00000513352 ANKRD35Q8N283 1001 aa17.26■□□□□ 0.35
NUP54-213ENST00000513352 TRIM47Q96LD4 638 aa17.26■□□□□ 0.35
NUP54-213ENST00000513352 ZNFX1Q9P2E3 1918 aaKnown RBP17.25■□□□□ 0.35
NUP54-213ENST00000513352 STK36Q9NRP7 1315 aa17.25■□□□□ 0.35
NUP54-213ENST00000513352 NFIBO00712 420 aa17.25■□□□□ 0.35
NUP54-213ENST00000513352 HSP90AA1P07900 732 aaKnown RBP17.25■□□□□ 0.35
NUP54-213ENST00000513352 CTGFP29279 349 aa17.25■□□□□ 0.35
NUP54-213ENST00000513352 KCTD2Q14681 263 aa17.25■□□□□ 0.35
NUP54-213ENST00000513352 FAM184AQ8NB25 1140 aa17.25■□□□□ 0.35
NUP54-213ENST00000513352 WASF1Q92558 559 aa17.25■□□□□ 0.35
NUP54-213ENST00000513352 LLPHQ9BRT6 129 aaKnown RBP17.25■□□□□ 0.35
NUP54-213ENST00000513352 FOXD4L1Q9NU39 408 aa17.25■□□□□ 0.35
NUP54-213ENST00000513352 hCG_1984214I3L0E3 225 aa17.24■□□□□ 0.35
NUP54-213ENST00000513352 STXBP3O00186 592 aa17.24■□□□□ 0.35
NUP54-213ENST00000513352 PKN1Q16512 942 aa17.24■□□□□ 0.35
NUP54-213ENST00000513352 MCF2L2Q86YR7 1114 aa17.24■□□□□ 0.35
NUP54-213ENST00000513352 ZNF713Q8N859 430 aaPredicted RBP17.24■□□□□ 0.35
NUP54-213ENST00000513352 CLEC4DQ8WXI8 215 aa17.24■□□□□ 0.35
NUP54-213ENST00000513352 AIFM3Q96NN9 605 aa17.24■□□□□ 0.35
NUP54-213ENST00000513352 BARHL2Q9NY43 387 aa17.24■□□□□ 0.35
NUP54-213ENST00000513352 VPS54Q9P1Q0 977 aa17.24■□□□□ 0.35
NUP54-213ENST00000513352 SMC3Q9UQE7 1217 aa17.24■□□□□ 0.35
NUP54-213ENST00000513352 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.24■□□□□ 0.35
NUP54-213ENST00000513352 SLC15A5A6NIM6 579 aa17.23■□□□□ 0.35
NUP54-213ENST00000513352 CFBP00751 764 aa17.23■□□□□ 0.35
NUP54-213ENST00000513352 PTPREP23469 700 aa17.23■□□□□ 0.35
NUP54-213ENST00000513352 CALML3P27482 149 aa17.23■□□□□ 0.35
NUP54-213ENST00000513352 HOXD10P28358 340 aa17.23■□□□□ 0.35
NUP54-213ENST00000513352 ADORA2AP29274 412 aa17.23■□□□□ 0.35
NUP54-213ENST00000513352 HMGN5P82970 282 aaKnown RBP17.23■□□□□ 0.35
NUP54-213ENST00000513352 BECN1Q14457 450 aa17.23■□□□□ 0.35
NUP54-213ENST00000513352 CCDC12Q8WUD4 166 aaPredicted RBP17.23■□□□□ 0.35
NUP54-213ENST00000513352 SOCS4Q8WXH5 440 aa17.23■□□□□ 0.35
NUP54-213ENST00000513352 CUL5Q93034 780 aa17.23■□□□□ 0.35
NUP54-213ENST00000513352 NUDT12Q9BQG2 462 aa17.23■□□□□ 0.35
NUP54-213ENST00000513352 ALG1Q9BT22 464 aa17.23■□□□□ 0.35
NUP54-213ENST00000513352 A1CFQ9NQ94 594 aaKnown RBP17.23■□□□□ 0.35
NUP54-213ENST00000513352 TRIM17Q9Y577 477 aa17.23■□□□□ 0.35
NUP54-213ENST00000513352 PFASO15067 1338 aa17.22■□□□□ 0.35
NUP54-213ENST00000513352 STRNO43815 780 aa17.22■□□□□ 0.35
NUP54-213ENST00000513352 XBP1P17861 261 aa17.22■□□□□ 0.35
NUP54-213ENST00000513352 ADCY7P51828 1080 aa17.22■□□□□ 0.35
NUP54-213ENST00000513352 CAP1Q01518 475 aa17.22■□□□□ 0.35
NUP54-213ENST00000513352 TRIM29Q14134 588 aa17.22■□□□□ 0.35
NUP54-213ENST00000513352 PPP1R18Q6NYC8 613 aa17.22■□□□□ 0.35
NUP54-213ENST00000513352 SLC30A10Q6XR72 485 aa17.22■□□□□ 0.35
NUP54-213ENST00000513352 RNF207Q6ZRF8 634 aa17.22■□□□□ 0.35
NUP54-213ENST00000513352 DPP9Q86TI2 863 aa17.22■□□□□ 0.35
NUP54-213ENST00000513352 CCDC148Q8NFR7 591 aa17.22■□□□□ 0.35
NUP54-213ENST00000513352 PLXNA1Q9UIW2 1896 aa17.21■□□□□ 0.35
NUP54-213ENST00000513352 POTEB2H3BUK9 544 aa17.21■□□□□ 0.35
NUP54-213ENST00000513352 PGK2P07205 417 aa17.21■□□□□ 0.35
NUP54-213ENST00000513352 ANP32AP39687 249 aaKnown RBP17.21■□□□□ 0.35
NUP54-213ENST00000513352 NLRP5P59047 1200 aa17.21■□□□□ 0.35
NUP54-213ENST00000513352 PRKCZQ05513 592 aa17.21■□□□□ 0.35
NUP54-213ENST00000513352 CUL4AQ13619 759 aa17.21■□□□□ 0.35
NUP54-213ENST00000513352 BAATQ14032 418 aaPredicted RBP17.21■□□□□ 0.35
NUP54-213ENST00000513352 GRB14Q14449 540 aa17.21■□□□□ 0.35
NUP54-213ENST00000513352 ABRAQ8N0Z2 381 aa17.21■□□□□ 0.35
NUP54-213ENST00000513352 SMARCC2Q8TAQ2 1214 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms