RNA–Protein interactions for RNA: snR42

snR42, Transcript of H/ACA box small nucleolar RNA (snoRNA), yeast

Gene snR42, Length 351 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR42	snR42	CDC24	P11433	854 aa	Predicted RBP	3.18	□□□□□ -1.9
snR42	snR42	UBA1	P22515	1024 aa	Known RBP	3.18	□□□□□ -1.9
snR42	snR42	SNT1	P25357	1226 aa		3.18	□□□□□ -1.9
snR42	snR42	AEP1	P32493	518 aa		3.18	□□□□□ -1.9
snR42	snR42	PEX5	P35056	612 aa		3.18	□□□□□ -1.9
snR42	snR42	CTF13	P35203	478 aa		3.18	□□□□□ -1.9
snR42	snR42	UTH1	P36135	365 aa		3.18	□□□□□ -1.9
snR42	snR42	POP4	P38336	279 aa		3.18	□□□□□ -1.9
snR42	snR42	OCA5	P38738	679 aa		3.18	□□□□□ -1.9
snR42	snR42	SMF2	P38778	549 aa		3.18	□□□□□ -1.9
snR42	snR42	END3	P39013	349 aa		3.18	□□□□□ -1.9
snR42	snR42	ERV46	P39727	415 aa		3.18	□□□□□ -1.9
snR42	snR42	ELO3	P40319	345 aa		3.18	□□□□□ -1.9
snR42	snR42	NDC80	P40460	691 aa		3.18	□□□□□ -1.9
snR42	snR42	IRR1	P40541	1150 aa		3.18	□□□□□ -1.9
snR42	snR42	TES1	P41903	349 aa	Known RBP	3.18	□□□□□ -1.9
snR42	snR42	FET5	P43561	622 aa		3.18	□□□□□ -1.9
snR42	snR42	CTK3	P46963	296 aa	Predicted RBP	3.18	□□□□□ -1.9
snR42	snR42	ATG36	P46983	293 aa		3.18	□□□□□ -1.9
snR42	snR42	CIS3	P47001	227 aa		3.18	□□□□□ -1.9
snR42	snR42	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	3.18	□□□□□ -1.9	not detected
snR42	snR42	IPI3	P53877	555 aa		3.18	□□□□□ -1.9
snR42	snR42	TEP1	P53916	434 aa		3.18	□□□□□ -1.9
snR42	snR42	SWS2	P53937	143 aa		3.18	□□□□□ -1.9
snR42	snR42	YAT1	P80235	687 aa		3.18	□□□□□ -1.9
snR42	snR42	EMI1	Q04406	187 aa		3.18	□□□□□ -1.9
snR42	snR42	YML096W	Q04489	525 aa		3.18	□□□□□ -1.9
snR42	snR42	POB3	Q04636	552 aa	Known RBP	3.18	□□□□□ -1.9
snR42	snR42	ARP9	Q05123	467 aa		3.18	□□□□□ -1.9
snR42	snR42	CIA1	Q05583	330 aa		3.18	□□□□□ -1.9
snR42	snR42	BNA5	Q05979	453 aa		3.18	□□□□□ -1.9
snR42	snR42	YLR456W	Q06199	204 aa		3.18	□□□□□ -1.9
snR42	snR42	VAC14	Q06708	880 aa		3.18	□□□□□ -1.9
snR42	snR42	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	3.18	□□□□□ -1.9	not detected
snR42	snR42	THI73	Q07904	523 aa		3.18	□□□□□ -1.9
snR42	snR42	YOL073C	Q08232	322 aa		3.18	□□□□□ -1.9
snR42	snR42	MCH5	Q08777	521 aa		3.18	□□□□□ -1.9
snR42	snR42	TRM8	Q12009	286 aa		3.18	□□□□□ -1.9
snR42	snR42	KCS1	Q12494	1050 aa		3.18	□□□□□ -1.9
snR42	snR42	YOR338W	Q99326	363 aa		3.18	□□□□□ -1.9
snR42	snR42	YPR089W	O13585	888 aa		3.17	□□□□□ -1.9
snR42	snR42	CPA1	P07258	411 aa	Known RBP	3.17	□□□□□ -1.9
snR42	snR42	RPL1A	P0CX43	217 aa	Known RBP	3.17	□□□□□ -1.9
snR42	snR42	RPL1B	P0CX44	217 aa	Known RBP	3.17	□□□□□ -1.9
snR42	snR42	CUP1-1	P0CX80	61 aa		3.17	□□□□□ -1.9
snR42	snR42	CUP1-2	P0CX81	61 aa		3.17	□□□□□ -1.9
snR42	snR42	APA1	P16550	321 aa	Known RBP	3.17	□□□□□ -1.9
snR42	snR42	ACO1	P19414	778 aa	Known RBP RIP-Chip data	3.17	□□□□□ -1.9	not detected
snR42	snR42	CLN1	P20437	546 aa		3.17	□□□□□ -1.9
snR42	snR42	EPT1	P22140	391 aa		3.17	□□□□□ -1.9
snR42	snR42	AAT2	P23542	418 aa	Known RBP	3.17	□□□□□ -1.9
snR42	snR42	YCL068C	P25593	260 aa		3.17	□□□□□ -1.9
snR42	snR42	MGT1	P26188	188 aa		3.17	□□□□□ -1.9
snR42	snR42	CIN8	P27895	1000 aa		3.17	□□□□□ -1.9
snR42	snR42	MLS1	P30952	554 aa		3.17	□□□□□ -1.9
snR42	snR42	HEM12	P32347	362 aa	Predicted RBP	3.17	□□□□□ -1.9
snR42	snR42	PLC1	P32383	869 aa		3.17	□□□□□ -1.9
snR42	snR42	SPS19	P32573	292 aa	Known RBP	3.17	□□□□□ -1.9
snR42	snR42	PRP18	P33411	251 aa	Predicted RBP	3.17	□□□□□ -1.9
snR42	snR42	ALY1	P36117	915 aa		3.17	□□□□□ -1.9
snR42	snR42	PBP2	P38151	413 aa	Known RBP RIP-Chip data	3.17	□□□□□ -1.9	not detected
snR42	snR42	VHC1	P38329	1120 aa		3.17	□□□□□ -1.9
snR42	snR42	MSG5	P38590	489 aa		3.17	□□□□□ -1.9
snR42	snR42	WSC4	P38739	605 aa		3.17	□□□□□ -1.9
snR42	snR42	PCL5	P38794	229 aa		3.17	□□□□□ -1.9
snR42	snR42	ELO1	P39540	310 aa		3.17	□□□□□ -1.9
snR42	snR42	ZRG8	P40021	1076 aa		3.17	□□□□□ -1.9
snR42	snR42	SCC4	P40090	624 aa		3.17	□□□□□ -1.9
snR42	snR42	BUD13	P46947	266 aa	Predicted RBP	3.17	□□□□□ -1.9
snR42	snR42	STR3	P53101	465 aa	Known RBP	3.17	□□□□□ -1.9
snR42	snR42	YGL108C	P53139	140 aa		3.17	□□□□□ -1.9
snR42	snR42	NOP15	P53927	220 aa	Predicted RBP	3.17	□□□□□ -1.9
snR42	snR42	TGL2	P54857	326 aa		3.17	□□□□□ -1.9
snR42	snR42	TRS31	Q03337	283 aa		3.17	□□□□□ -1.9
snR42	snR42	YMR160W	Q03823	816 aa		3.17	□□□□□ -1.9
snR42	snR42	RCO1	Q04779	684 aa		3.17	□□□□□ -1.9
snR42	snR42	VTA1	Q06263	330 aa		3.17	□□□□□ -1.9
snR42	snR42	ESC2	Q06340	456 aa		3.17	□□□□□ -1.9
snR42	snR42	OMS1	Q06668	471 aa		3.17	□□□□□ -1.9
snR42	snR42	RKM5	Q12367	367 aa		3.17	□□□□□ -1.9
snR42	snR42	UBR1	P19812	1950 aa		3.17	□□□□□ -1.9
snR42	snR42	TOR1	P35169	2470 aa		3.17	□□□□□ -1.9
snR42	snR42	INO1	P11986	533 aa		3.16	□□□□□ -1.9
snR42	snR42	NSP1	P14907	823 aa	Known RBP	3.16	□□□□□ -1.9
snR42	snR42	SPO16	P17122	198 aa		3.16	□□□□□ -1.9
snR42	snR42	SYP1	P25623	870 aa	Known RBP	3.16	□□□□□ -1.9
snR42	snR42	MSH1	P25846	959 aa		3.16	□□□□□ -1.9
snR42	snR42	CWP1	P28319	239 aa		3.16	□□□□□ -1.9
snR42	snR42	SPR1	P32603	445 aa		3.16	□□□□□ -1.9
snR42	snR42	IMP3	P32899	183 aa	Predicted RBP	3.16	□□□□□ -1.9
snR42	snR42	WBP1	P33767	430 aa	Known RBP	3.16	□□□□□ -1.9
snR42	snR42	LEU5	P38702	357 aa		3.16	□□□□□ -1.9
snR42	snR42	YHR219W	P38900	624 aa		3.16	□□□□□ -1.9
snR42	snR42	CYC2	P38909	366 aa		3.16	□□□□□ -1.9
snR42	snR42	SMF1	P38925	575 aa		3.16	□□□□□ -1.9
snR42	snR42	RPH1	P39956	796 aa		3.16	□□□□□ -1.9
snR42	snR42	LSM5	P40089	93 aa	Known RBP	3.16	□□□□□ -1.9
snR42	snR42	ALG8	P40351	577 aa		3.16	□□□□□ -1.9
snR42	snR42	MAD1	P40957	749 aa		3.16	□□□□□ -1.9
snR42	snR42	PXA1	P41909	870 aa		3.16	□□□□□ -1.9

Retrieved 100 of 5,963 RNA–protein pairs in 172.6 ms