RNA–Protein interactions for RNA: YDR177W

UBC1, Transcript of Ubiquitin-conjugating enzyme, yeast

Gene UBC1, Length 648 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC1	YDR177W	TMA10	Q06177	86 aa		4.86	□□□□□ -1.63
UBC1	YDR177W	YDL242W	Q07746	117 aa		4.86	□□□□□ -1.63
UBC1	YDR177W	ETT1	Q08421	412 aa	Known RBP	4.86	□□□□□ -1.63
UBC1	YDR177W	COX1	P00401	534 aa		4.85	□□□□□ -1.63
UBC1	YDR177W	GSH1	P32477	678 aa		4.85	□□□□□ -1.63
UBC1	YDR177W	WSS1	P38838	269 aa		4.85	□□□□□ -1.63
UBC1	YDR177W	ATF1	P40353	525 aa		4.85	□□□□□ -1.63
UBC1	YDR177W	ARG2	P40360	574 aa		4.85	□□□□□ -1.63
UBC1	YDR177W	CCT7	P42943	550 aa	Known RBP	4.85	□□□□□ -1.63
UBC1	YDR177W	PTR3	P43606	678 aa		4.85	□□□□□ -1.63
UBC1	YDR177W	SMC3	P47037	1230 aa		4.85	□□□□□ -1.63
UBC1	YDR177W	MSY1	P48527	492 aa		4.85	□□□□□ -1.63
UBC1	YDR177W	RPS15	Q01855	142 aa	Known RBP	4.85	□□□□□ -1.63
UBC1	YDR177W	SOV1	Q04748	898 aa		4.85	□□□□□ -1.63
UBC1	YDR177W	RRP45	Q05636	305 aa	Known RBP	4.85	□□□□□ -1.63
UBC1	YDR177W	YPL272C	Q08984	517 aa		4.85	□□□□□ -1.63
UBC1	YDR177W	MLH3	Q12083	715 aa		4.85	□□□□□ -1.63
UBC1	YDR177W	MED2	Q12124	431 aa		4.85	□□□□□ -1.63
UBC1	YDR177W	LEU9	Q12166	604 aa	Known RBP	4.85	□□□□□ -1.63
UBC1	YDR177W	RPN5	Q12250	445 aa	Known RBP	4.85	□□□□□ -1.63
UBC1	YDR177W	AI5_ALPHA	Q9ZZX1	630 aa		4.85	□□□□□ -1.63
UBC1	YDR177W	GLK1	P17709	500 aa	Known RBP	4.84	□□□□□ -1.63
UBC1	YDR177W	RRF1	P38771	230 aa		4.84	□□□□□ -1.63
UBC1	YDR177W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.84	□□□□□ -1.63	not detected
UBC1	YDR177W	NPA3	P47122	385 aa		4.84	□□□□□ -1.63
UBC1	YDR177W	IMD4	P50094	524 aa	Known RBP	4.84	□□□□□ -1.63
UBC1	YDR177W	MCM6	P53091	1017 aa	Known RBP	4.84	□□□□□ -1.63
UBC1	YDR177W	IPI3	P53877	555 aa		4.84	□□□□□ -1.63
UBC1	YDR177W	EFM6	P53970	246 aa		4.84	□□□□□ -1.63
UBC1	YDR177W	RPA49	Q01080	415 aa	Predicted RBP	4.84	□□□□□ -1.63
UBC1	YDR177W	UBP16	Q02863	499 aa		4.84	□□□□□ -1.63
UBC1	YDR177W	TRS23	Q03784	219 aa		4.84	□□□□□ -1.63
UBC1	YDR177W	ARX1	Q03862	593 aa	Known RBP	4.84	□□□□□ -1.63
UBC1	YDR177W	YMR111C	Q04461	462 aa	Predicted RBP	4.84	□□□□□ -1.63
UBC1	YDR177W	MGR3	Q04472	501 aa		4.84	□□□□□ -1.63
UBC1	YDR177W	DPB4	Q04603	196 aa	Known RBP	4.84	□□□□□ -1.63
UBC1	YDR177W	RGC1	Q06108	1083 aa	Known RBP	4.84	□□□□□ -1.63
UBC1	YDR177W	REX3	Q12090	404 aa		4.84	□□□□□ -1.63
UBC1	YDR177W	INP53	Q12271	1107 aa		4.84	□□□□□ -1.63
UBC1	YDR177W	YLR358C	O13565	187 aa		4.83	□□□□□ -1.64
UBC1	YDR177W	ERG4	P25340	473 aa		4.83	□□□□□ -1.64
UBC1	YDR177W	PRD1	P25375	712 aa		4.83	□□□□□ -1.64
UBC1	YDR177W	ERV1	P27882	189 aa		4.83	□□□□□ -1.64
UBC1	YDR177W	GYP6	P32806	458 aa		4.83	□□□□□ -1.64
UBC1	YDR177W	YME2	P32843	850 aa		4.83	□□□□□ -1.64
UBC1	YDR177W	YBR144C	P34215	104 aa		4.83	□□□□□ -1.64
UBC1	YDR177W	LST4	P34239	828 aa		4.83	□□□□□ -1.64
UBC1	YDR177W	ICS2	P38284	255 aa		4.83	□□□□□ -1.64
UBC1	YDR177W	KSP1	P38691	1029 aa	Known RBP	4.83	□□□□□ -1.64
UBC1	YDR177W	YHR097C	P38809	366 aa	Known RBP	4.83	□□□□□ -1.64
UBC1	YDR177W	EFM4	P40516	257 aa		4.83	□□□□□ -1.64
UBC1	YDR177W	SWP82	P43554	623 aa		4.83	□□□□□ -1.64
UBC1	YDR177W	FMS1	P50264	508 aa		4.83	□□□□□ -1.64
UBC1	YDR177W	YGL138C	P53122	345 aa		4.83	□□□□□ -1.64
UBC1	YDR177W	NMA2	P53204	395 aa		4.83	□□□□□ -1.64
UBC1	YDR177W	HST1	P53685	503 aa		4.83	□□□□□ -1.64
UBC1	YDR177W	RRP9	Q06506	573 aa	Known RBP	4.83	□□□□□ -1.64
UBC1	YDR177W	AIM39	Q08223	395 aa		4.83	□□□□□ -1.64
UBC1	YDR177W	VPS54	Q12071	889 aa		4.83	□□□□□ -1.64
UBC1	YDR177W	RLM1	Q12224	676 aa		4.83	□□□□□ -1.64
UBC1	YDR177W	KOG1	P38873	1557 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	RPC40	P07703	335 aa	Known RBP	4.82	□□□□□ -1.64
UBC1	YDR177W	WHI2	P12611	486 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	IMG1	P25626	169 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	BUD14	P27637	709 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	MRPL9	P31334	269 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	RRT2	P38332	387 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	VBA2	P38358	474 aa	Known RBP	4.82	□□□□□ -1.64
UBC1	YDR177W	GIP4	P39732	760 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	ECM10	P39987	644 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	PCL7	P40186	285 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	OPT1	P40897	799 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	PMT6	P42934	759 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	STB2	P46679	850 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	YGR149W	P48236	432 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	PRP43	P53131	767 aa	Known RBP	4.82	□□□□□ -1.64
UBC1	YDR177W	SNF12	P53628	566 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	TOF1	P53840	1238 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	YNL058C	P53947	316 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	ADE16	P54113	591 aa	Known RBP	4.82	□□□□□ -1.64
UBC1	YDR177W	SKO1	Q02100	647 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	YLR456W	Q06199	204 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	MLH2	Q07980	695 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	CDC45	Q08032	650 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	TAF3	Q12297	353 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	HSL1	P34244	1518 aa		4.82	□□□□□ -1.64
UBC1	YDR177W	YLR278C	Q05854	1341 aa		4.81	□□□□□ -1.64
UBC1	YDR177W	ALG7	P07286	448 aa		4.81	□□□□□ -1.64
UBC1	YDR177W	ILV2	P07342	687 aa	Known RBP	4.81	□□□□□ -1.64
UBC1	YDR177W	ART10	P18634	518 aa	Known RBP	4.81	□□□□□ -1.64
UBC1	YDR177W	AMD2	P22580	549 aa		4.81	□□□□□ -1.64
UBC1	YDR177W	BOS1	P25385	244 aa		4.81	□□□□□ -1.64
UBC1	YDR177W	YEL043W	P32618	956 aa		4.81	□□□□□ -1.64
UBC1	YDR177W	UGP1	P32861	499 aa	Known RBP	4.81	□□□□□ -1.64
UBC1	YDR177W	HEL1	P36113	551 aa		4.81	□□□□□ -1.64
UBC1	YDR177W	GMH1	P36125	273 aa		4.81	□□□□□ -1.64
UBC1	YDR177W	AIM3	P38266	947 aa	Known RBP	4.81	□□□□□ -1.64
UBC1	YDR177W	COQ6	P53318	479 aa		4.81	□□□□□ -1.64
UBC1	YDR177W	YDR179W-A	Q03983	463 aa		4.81	□□□□□ -1.64
UBC1	YDR177W	PDS5	Q04264	1277 aa		4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 16.4 ms