RNA–Protein interactions for RNA: YDR034C-D

YDR034C-D, Transcript of Retrotransposon TYA Gag and TYB Pol genes, yeast

Gene YDR034C-D, Length 5,313 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YDR034C-D	YDR034C-D	DAK1	P54838	584 aa	Known RBP	3	□□□□□ -1.93
YDR034C-D	YDR034C-D	UTP6	Q02354	440 aa	Known RBP	3	□□□□□ -1.93
YDR034C-D	YDR034C-D	YMR160W	Q03823	816 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	KAP95	Q06142	861 aa	Known RBP	3	□□□□□ -1.93
YDR034C-D	YDR034C-D	YML002W	P0CF17	737 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	EST1	P17214	699 aa	Predicted RBP	3	□□□□□ -1.93
YDR034C-D	YDR034C-D	KAR4	P25583	335 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	CDC20	P26309	610 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	VPS17	P32913	551 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	MRPL40	P36534	297 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	RFC3	P38629	340 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	SEC31	P38968	1273 aa	Known RBP	3	□□□□□ -1.93
YDR034C-D	YDR034C-D	ALK1	P43633	760 aa	Known RBP	3	□□□□□ -1.93
YDR034C-D	YDR034C-D	IDS2	P46958	469 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	YDR132C	Q03900	495 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	HPF1	Q05164	967 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	TRM13	Q12383	476 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	ERG27	Q12452	347 aa	Known RBP	3	□□□□□ -1.93
YDR034C-D	YDR034C-D	PRE8	P23639	250 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	PUP3	P25451	205 aa	Known RBP	3	□□□□□ -1.93
YDR034C-D	YDR034C-D	ICP55	P40051	511 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	PRY1	P47032	299 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	YNL143C	P53908	130 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	MAK10	Q02197	733 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	COX3	P00420	269 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	NTR2	P36118	322 aa	Predicted RBP	3	□□□□□ -1.93
YDR034C-D	YDR034C-D	SAF1	P38352	637 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	OTU2	P38747	307 aa	Known RBP	3	□□□□□ -1.93
YDR034C-D	YDR034C-D	MPS3	P47069	682 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	RIA1	P53893	1110 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	COQ9	Q05779	260 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	RRT8	Q08219	342 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	GSH2	Q08220	491 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	NDJ1	Q12366	352 aa		3	□□□□□ -1.93
YDR034C-D	YDR034C-D	YBR085C-A	O43137	85 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	EMC1	P25574	760 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	UGP1	P32861	499 aa	Known RBP	2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	AAP1	P37898	856 aa	Known RBP	2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	STB2	P46679	850 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	CTR1	P49573	406 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	NRG1	Q03125	231 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	MLH3	Q12083	715 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	PAP1	P29468	568 aa	Known RBP	2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	COY1	P34237	679 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	CTH1	P47976	325 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	YAT1	P80235	687 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	CUR1	Q06469	252 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	NCE102	Q12207	173 aa	RIP-Chip data	2.99	□□□□□ -1.93	not detected
YDR034C-D	YDR034C-D	YDR215C	Q12240	137 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	TAF3	Q12297	353 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	YDL007C-A	Q2V2Q0	85 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	HIP1	P06775	603 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	LAM5	P43560	674 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	NET1	P47035	1189 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	CTK1	Q03957	528 aa	Known RBP	2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	STE23	Q06010	1027 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	CRN1	Q06440	651 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	CNE1	P27825	502 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	YIM1	P28625	365 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	APT2	P36973	181 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	NTC20	P38302	140 aa	Predicted RBP	2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	MCM6	P53091	1017 aa	Known RBP	2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	RPT4	P53549	437 aa	Known RBP	2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	VTA1	Q06263	330 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	NDL1	Q06568	189 aa		2.99	□□□□□ -1.93
YDR034C-D	YDR034C-D	SGS1	P35187	1447 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	NIP100	P33420	868 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	LOT5	P34234	306 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	MTG2	P38860	518 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	VPS73	P53142	486 aa	Known RBP	2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	DRN1	P53255	507 aa	Known RBP	2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	YDL242W	Q07746	117 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	NOP12	Q08208	459 aa	Known RBP	2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	APC5	Q08683	685 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	VPS54	Q12071	889 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	UBA1	P22515	1024 aa	Known RBP	2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	SNU114	P36048	1008 aa	Known RBP	2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	TUL1	P36096	758 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	NUP133	P36161	1157 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	CTP1	P38152	299 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	MCX1	P38323	520 aa	Predicted RBP	2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	REV7	P38927	245 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	RPS7B	P48164	190 aa	Known RBP	2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	CUE3	P53137	624 aa	Known RBP	2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	ADA2	Q02336	434 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	DCI1	Q08558	271 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	LCB4	Q12246	624 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	SEC63	P14906	663 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	PDA1	P16387	420 aa	Known RBP	2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	TRM2	P33753	639 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	CTM1	P38818	585 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	PHM8	P40025	321 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	OPT1	P40897	799 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	MSE1	P48525	536 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	NUP84	P52891	726 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	DFG16	Q99234	619 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	COX1	P00401	534 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	STE4	P18851	423 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	YBL028C	P38202	106 aa		2.98	□□□□□ -1.93
YDR034C-D	YDR034C-D	UBC11	P52492	156 aa		2.98	□□□□□ -1.93

Retrieved 100 of 5,963 RNA–protein pairs in 32.8 ms