RNA–Protein interactions for RNA: YAL043C

PTA1, Transcript of Subunit of holo-CPF, yeast

Gene PTA1, Length 2,358 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PTA1	YAL043C	ATG17	Q06410	417 aa		4.06	□□□□□ -1.76
PTA1	YAL043C	MCM21	Q06675	368 aa		4.06	□□□□□ -1.76
PTA1	YAL043C	RSB1	Q08417	382 aa		4.06	□□□□□ -1.76
PTA1	YAL043C	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.06	□□□□□ -1.76	not detected
PTA1	YAL043C	RAD59	Q12223	238 aa		4.06	□□□□□ -1.76
PTA1	YAL043C	HRT3	Q12347	344 aa		4.06	□□□□□ -1.76
PTA1	YAL043C	BRR1	Q99177	341 aa	Predicted RBP	4.06	□□□□□ -1.76
PTA1	YAL043C	DST1	P07273	309 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	NMT1	P14743	455 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	CBS2	P14905	389 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	TAL1	P15019	335 aa	Known RBP	4.05	□□□□□ -1.76
PTA1	YAL043C	RBK1	P25332	333 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	CTR86	P25355	563 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	RSA4	P25382	515 aa	Known RBP	4.05	□□□□□ -1.76
PTA1	YAL043C	SPB1	P25582	841 aa	Predicted RBP	4.05	□□□□□ -1.76
PTA1	YAL043C	FUB1	P25659	250 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	RPS5	P26783	225 aa	Known RBP	4.05	□□□□□ -1.76
PTA1	YAL043C	PMI40	P29952	429 aa	Known RBP	4.05	□□□□□ -1.76
PTA1	YAL043C	TFC1	P32367	649 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	KAP104	P38217	918 aa	Known RBP	4.05	□□□□□ -1.76
PTA1	YAL043C	ARP1	P38696	384 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	YLF2	P38746	405 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	FSH1	P38777	243 aa	Known RBP	4.05	□□□□□ -1.76
PTA1	YAL043C	YHR054C	P38780	354 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	IRR1	P40541	1150 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	YIR007W	P40566	764 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	MNN11	P46985	422 aa	Known RBP	4.05	□□□□□ -1.76
PTA1	YAL043C	YPT32	P51996	222 aa	Known RBP	4.05	□□□□□ -1.76
PTA1	YAL043C	YGL108C	P53139	140 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	VAC7	P53950	1165 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	YNL033W	P53964	284 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	YNL019C	P53975	284 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	PNG1	Q02890	363 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	HRD3	Q05787	833 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	DNL4	Q08387	944 aa	Predicted RBP	4.05	□□□□□ -1.76
PTA1	YAL043C	MUM3	Q08750	479 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	CIR2	Q08822	631 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	HFI1	Q12060	488 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	NBP2	Q12163	236 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	TIF6	Q12522	245 aa	Known RBP	4.05	□□□□□ -1.76
PTA1	YAL043C	TPK2	P06245	380 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	POL30	P15873	258 aa	Known RBP	4.05	□□□□□ -1.76
PTA1	YAL043C	PMA2	P19657	947 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	MSS51	P32335	436 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	VPH2	P32341	215 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	MAE1	P36013	669 aa	Known RBP	4.05	□□□□□ -1.76
PTA1	YAL043C	YMC2	P38087	329 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	GIP1	P38229	639 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	DLD3	P39976	496 aa	Known RBP	4.05	□□□□□ -1.76
PTA1	YAL043C	AVT6	P40074	448 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	RIC1	P40395	1056 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	SNL1	P40548	159 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	TES1	P41903	349 aa	Known RBP	4.05	□□□□□ -1.76
PTA1	YAL043C	YFL066C	P43538	392 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	NET1	P47035	1189 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	TIM54	P47045	478 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	SAP4	P53036	818 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	ARC35	P53731	342 aa	Known RBP	4.05	□□□□□ -1.76
PTA1	YAL043C	YNL134C	P53912	376 aa	Known RBP	4.05	□□□□□ -1.76
PTA1	YAL043C	TMA20	P89886	181 aa	Predicted RBP	4.05	□□□□□ -1.76
PTA1	YAL043C	MTD1	Q02046	320 aa	Known RBP	4.05	□□□□□ -1.76
PTA1	YAL043C	SYT1	Q06836	1226 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	YLR049C	Q12110	428 aa		4.05	□□□□□ -1.76
PTA1	YAL043C	GCY1	P14065	312 aa	Known RBP RIP-Chip data	4.04	□□□□□ -1.76	not detected
PTA1	YAL043C	AFT1	P22149	690 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	PHO84	P25297	587 aa	Known RBP	4.04	□□□□□ -1.76
PTA1	YAL043C	BUB2	P26448	306 aa	Predicted RBP	4.04	□□□□□ -1.76
PTA1	YAL043C	MDJ1	P35191	511 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	MRP8	P35719	219 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	FAA2	P39518	744 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	YJL070C	P40361	888 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	CCT7	P42943	550 aa	Known RBP	4.04	□□□□□ -1.76
PTA1	YAL043C	ARC1	P46672	376 aa	Known RBP	4.04	□□□□□ -1.76
PTA1	YAL043C	YPR003C	P53394	754 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	GRX5	Q02784	150 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	SVL3	Q03088	825 aa	Known RBP	4.04	□□□□□ -1.76
PTA1	YAL043C	RCR2	Q03446	210 aa	Known RBP	4.04	□□□□□ -1.76
PTA1	YAL043C	RPN4	Q03465	531 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	MSF1	P08425	469 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	KAR1	P11927	433 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	FAR1	P21268	830 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	CAD1	P24813	409 aa	Known RBP	4.04	□□□□□ -1.76
PTA1	YAL043C	YSP3	P25036	478 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	RGT1	P32862	1170 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	TPO5	P36029	618 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	TFA2	P36145	328 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	UBX7	P38349	436 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	FAD1	P38913	306 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	OPT1	P40897	799 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	EMC2	P47133	292 aa	Known RBP	4.04	□□□□□ -1.76
PTA1	YAL043C	JJJ3	P47138	172 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	GCV2	P49095	1034 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	GND2	P53319	492 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	ORC3	P54790	616 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	GCN5	Q03330	439 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	GOT1	Q03554	138 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	HSP31	Q04432	237 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	YHC1	Q05900	231 aa	Known RBP	4.04	□□□□□ -1.76
PTA1	YAL043C	GMC2	Q06201	188 aa		4.04	□□□□□ -1.76
PTA1	YAL043C	ARV1	Q06541	321 aa		4.04	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 12.9 ms