RNA–Protein interactions for RNA: YBR030W

RKM3, Transcript of Ribosomal lysine methyltransferase, yeast

Gene RKM3, Length 1,659 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RKM3	YBR030W	ERV1	P27882	189 aa		4.45	□□□□□ -1.7
RKM3	YBR030W	YBR053C	P38235	358 aa		4.45	□□□□□ -1.7
RKM3	YBR030W	VMA13	P41807	478 aa	Known RBP	4.45	□□□□□ -1.7
RKM3	YBR030W	FHN1	P53279	174 aa		4.45	□□□□□ -1.7
RKM3	YBR030W	SEC5	P89102	971 aa		4.45	□□□□□ -1.7
RKM3	YBR030W	RPA49	Q01080	415 aa	Predicted RBP	4.45	□□□□□ -1.7
RKM3	YBR030W	INA17	Q02888	182 aa		4.45	□□□□□ -1.7
RKM3	YBR030W	RPC11	Q04307	110 aa	Predicted RBP	4.45	□□□□□ -1.7
RKM3	YBR030W	VPS38	Q05919	439 aa		4.45	□□□□□ -1.7
RKM3	YBR030W	ACK1	Q07622	623 aa	Predicted RBP	4.45	□□□□□ -1.7
RKM3	YBR030W	SPE3	Q12074	293 aa	Known RBP	4.45	□□□□□ -1.7
RKM3	YBR030W	ATG29	Q12092	213 aa		4.45	□□□□□ -1.7
RKM3	YBR030W	AFI1	Q99222	893 aa		4.45	□□□□□ -1.7
RKM3	YBR030W	ARD1	P07347	238 aa	Predicted RBP	4.44	□□□□□ -1.7
RKM3	YBR030W	REC107	P21651	314 aa		4.44	□□□□□ -1.7
RKM3	YBR030W	PDE1	P22434	369 aa		4.44	□□□□□ -1.7
RKM3	YBR030W	CPR2	P23285	205 aa		4.44	□□□□□ -1.7
RKM3	YBR030W	CDC20	P26309	610 aa		4.44	□□□□□ -1.7
RKM3	YBR030W	RFA2	P26754	273 aa	Known RBP	4.44	□□□□□ -1.7
RKM3	YBR030W	PAP1	P29468	568 aa	Known RBP	4.44	□□□□□ -1.7
RKM3	YBR030W	SYN8	P31377	255 aa		4.44	□□□□□ -1.7
RKM3	YBR030W	NTH1	P32356	751 aa		4.44	□□□□□ -1.7
RKM3	YBR030W	LAS1	P36146	502 aa	Predicted RBP	4.44	□□□□□ -1.7
RKM3	YBR030W	FTH1	P38310	465 aa		4.44	□□□□□ -1.7
RKM3	YBR030W	MAF1	P41910	395 aa		4.44	□□□□□ -1.7
RKM3	YBR030W	CTK2	P46962	323 aa		4.44	□□□□□ -1.7
RKM3	YBR030W	AMA1	P50082	593 aa		4.44	□□□□□ -1.7
RKM3	YBR030W	YGR079W	P53249	370 aa		4.44	□□□□□ -1.7
RKM3	YBR030W	GCN5	Q03330	439 aa		4.44	□□□□□ -1.7
RKM3	YBR030W	RQC1	Q05468	723 aa	Known RBP	4.44	□□□□□ -1.7
RKM3	YBR030W	YLR224W	Q05947	369 aa		4.44	□□□□□ -1.7
RKM3	YBR030W	CDA2	Q06703	312 aa		4.44	□□□□□ -1.7
RKM3	YBR030W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.44	□□□□□ -1.7	not detected
RKM3	YBR030W	LAS17	Q12446	633 aa		4.44	□□□□□ -1.7
RKM3	YBR030W	GAL80	P04387	435 aa		4.43	□□□□□ -1.7
RKM3	YBR030W	YIH1	P25637	258 aa		4.43	□□□□□ -1.7
RKM3	YBR030W	CTP1	P38152	299 aa		4.43	□□□□□ -1.7
RKM3	YBR030W	YFR016C	P43597	1233 aa	Known RBP	4.43	□□□□□ -1.7
RKM3	YBR030W	MUP1	P50276	574 aa		4.43	□□□□□ -1.7
RKM3	YBR030W	PAN2	P53010	1115 aa	Predicted RBP	4.43	□□□□□ -1.7
RKM3	YBR030W	STR3	P53101	465 aa	Known RBP	4.43	□□□□□ -1.7
RKM3	YBR030W	CUL3	P53202	744 aa		4.43	□□□□□ -1.7
RKM3	YBR030W	NCS2	P53923	493 aa	Predicted RBP	4.43	□□□□□ -1.7
RKM3	YBR030W	EOS1	P53938	366 aa		4.43	□□□□□ -1.7
RKM3	YBR030W	YDR239C	Q03780	787 aa		4.43	□□□□□ -1.7
RKM3	YBR030W	YDR132C	Q03900	495 aa		4.43	□□□□□ -1.7
RKM3	YBR030W	PDB1	P32473	366 aa	Known RBP	4.42	□□□□□ -1.7
RKM3	YBR030W	PMT1	P33775	817 aa		4.42	□□□□□ -1.7
RKM3	YBR030W	ELF1	P36053	145 aa		4.42	□□□□□ -1.7
RKM3	YBR030W	UIP5	P36137	443 aa		4.42	□□□□□ -1.7
RKM3	YBR030W	AGP2	P38090	596 aa		4.42	□□□□□ -1.7
RKM3	YBR030W	OTU2	P38747	307 aa	Known RBP	4.42	□□□□□ -1.7
RKM3	YBR030W	ERC1	P38767	581 aa		4.42	□□□□□ -1.7
RKM3	YBR030W	IRC24	P40580	263 aa		4.42	□□□□□ -1.7
RKM3	YBR030W	PET130	P47065	347 aa		4.42	□□□□□ -1.7
RKM3	YBR030W	OCA1	P50946	238 aa	Predicted RBP	4.42	□□□□□ -1.7
RKM3	YBR030W	SPC98	P53540	846 aa		4.42	□□□□□ -1.7
RKM3	YBR030W	DAK1	P54838	584 aa	Known RBP	4.42	□□□□□ -1.7
RKM3	YBR030W	BUD22	Q04347	519 aa	Known RBP	4.42	□□□□□ -1.7
RKM3	YBR030W	MMR1	Q06324	491 aa		4.42	□□□□□ -1.7
RKM3	YBR030W	YER175W-A	Q8TGU4	54 aa		4.42	□□□□□ -1.7
RKM3	YBR030W	INO80	P53115	1489 aa		4.42	□□□□□ -1.7
RKM3	YBR030W	EST1	P17214	699 aa	Predicted RBP	4.41	□□□□□ -1.7
RKM3	YBR030W	GAS1	P22146	559 aa	Known RBP	4.41	□□□□□ -1.7
RKM3	YBR030W	CDC15	P27636	974 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	CDC5	P32562	705 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	SMI1	P32566	505 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	SWH1	P35845	1188 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	CMC1	P36064	111 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	HEL1	P36113	551 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	MNN2	P38069	597 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	SIF2	P38262	535 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	GND1	P38720	489 aa	Known RBP	4.41	□□□□□ -1.7
RKM3	YBR030W	YNG2	P38806	282 aa	Known RBP	4.41	□□□□□ -1.7
RKM3	YBR030W	SWP82	P43554	623 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	FYV8	P46949	817 aa	Known RBP	4.41	□□□□□ -1.7
RKM3	YBR030W	ECL1	P48235	211 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	CTR1	P49573	406 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	UBC11	P52492	156 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	TOF1	P53840	1238 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	SOV1	Q04748	898 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	CRN1	Q06440	651 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	MRI1	Q06489	411 aa	Known RBP	4.41	□□□□□ -1.7
RKM3	YBR030W	RPN5	Q12250	445 aa	Known RBP	4.41	□□□□□ -1.7
RKM3	YBR030W	AVL9	Q12500	764 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	YSP3	P25036	478 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	SNT1	P25357	1226 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	BUD14	P27637	709 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	TFB1	P32776	642 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	WBP1	P33767	430 aa	Known RBP	4.41	□□□□□ -1.7
RKM3	YBR030W	PHO11	P35842	467 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	PHO12	P38693	467 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	AFG3	P39925	761 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	VID30	P53076	958 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	TWF1	P53250	332 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	YAT1	P80235	687 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	RPS15	Q01855	142 aa	Known RBP	4.41	□□□□□ -1.7
RKM3	YBR030W	IRC13	Q08630	104 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	MLH3	Q12083	715 aa		4.41	□□□□□ -1.7
RKM3	YBR030W	RPS13	P05756	151 aa	Known RBP	4.4	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 23.6 ms