RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Gm5936A2BG95 728 aa13.11□□□□□ -0.31
Trim56-201ENSMUST00000054384 Gm5640A3KG49 728 aa13.11□□□□□ -0.31
Trim56-201ENSMUST00000054384 Surf6P70279 355 aaKnown RBP13.11□□□□□ -0.31
Trim56-201ENSMUST00000054384 Stxbp3Q60770 592 aa13.11□□□□□ -0.31
Trim56-201ENSMUST00000054384 Krt12Q64291 487 aa13.11□□□□□ -0.31
Trim56-201ENSMUST00000054384 Pomgnt1Q91X88 660 aa13.11□□□□□ -0.31
Trim56-201ENSMUST00000054384 Saal1Q9D2C2 474 aa13.11□□□□□ -0.31
Trim56-201ENSMUST00000054384 Polr3cQ9D483 533 aa13.11□□□□□ -0.31
Trim56-201ENSMUST00000054384 Arhgef12Q8R4H2 1543 aaKnown RBP13.11□□□□□ -0.31
Trim56-201ENSMUST00000054384 PtprkP35822 1457 aa13.11□□□□□ -0.31
Trim56-201ENSMUST00000054384 Il4rP16382 810 aa13.11□□□□□ -0.31
Trim56-201ENSMUST00000054384 RcvrnP34057 202 aa13.11□□□□□ -0.31
Trim56-201ENSMUST00000054384 Rab3gap1Q80UJ7 981 aa13.11□□□□□ -0.31
Trim56-201ENSMUST00000054384 Dnajc25A2ALW5 357 aa13.11□□□□□ -0.31
Trim56-201ENSMUST00000054384 Evi5P97366 809 aa13.11□□□□□ -0.31
Trim56-201ENSMUST00000054384 Nkiras1Q8CEC5 192 aa13.11□□□□□ -0.31
Trim56-201ENSMUST00000054384 Ankrd2Q9WV06 328 aa13.11□□□□□ -0.31
Trim56-201ENSMUST00000054384 Prex2Q3LAC4 1598 aa13.11□□□□□ -0.31
Trim56-201ENSMUST00000054384 Myl10Q62082 202 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Rapgef5Q8C0Q9 814 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 LpxnQ99N69 386 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Angptl3Q9R182 455 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Sorbs3Q9R1Z8 733 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 TsksO54887 585 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Ccdc153P0C7Q1 202 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Sult6b1P0CC03 303 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Eif4a2P10630 407 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Atp7aQ64430 1491 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Surf1P09925 306 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Rad23aP54726 363 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Ddb1Q3U1J4 1140 aaKnown RBP13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 SyncQ9EPM5 470 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Wdr17E9Q271 1322 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Cdcp1Q5U462 833 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Jade1Q6ZPI0 834 aaKnown RBP13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Ppp4r1Q8K2V1 951 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Lamc3Q9R0B6 1581 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Tnip3A0A1D5RMN0 279 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Atf2P16951 487 aaKnown RBP13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Atp2b4Q6Q477 1205 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Ivns1abpQ920Q8 642 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Prl3d3A0A0M6L0J6 224 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 LgsnQ8CIX8 563 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Pck1Q9Z2V4 622 aa13.1□□□□□ -0.31
Trim56-201ENSMUST00000054384 Mast1Q9R1L5 1570 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 HelbQ6NVF4 1074 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Trim42Q9D2H5 723 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 MesdQ9ERE7 224 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Lmo7E9PYF4 1699 aaKnown RBP13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Fancd2Q80V62 1450 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Otud7bB2RUR8 840 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Zkscan8Q8BSL0 588 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Utp11Q9CZJ1 253 aaKnown RBP13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Scyl2Q8CFE4 930 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Cabp7Q91ZM8 215 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Slc8a1P70414 970 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Dab2P98078 766 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Clcn1Q64347 994 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Lrrc8cQ8R502 803 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 YarsQ91WQ3 528 aaKnown RBP13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Ankrd50F7BE84 1390 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Trip13Q3UA06 432 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Spata17Q9D552 379 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Edc4Q3UJB9 1406 aaKnown RBP13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Arhgef10lA2AWP8 1280 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Prl7a2O54831 253 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Klhl14Q69ZK5 630 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Lonrf3Q9D4H7 753 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Gm6588E9Q3K0 461 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Atp6v1aP50516 617 aaKnown RBP13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Tpd52Q62393 224 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Spdl1Q923A2 608 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Tex9Q9D845 387 aa13.09□□□□□ -0.31
Trim56-201ENSMUST00000054384 Psip1Q99JF8 528 aaKnown RBP13.08□□□□□ -0.31
Trim56-201ENSMUST00000054384 LrgukQ9D5S7 820 aa13.08□□□□□ -0.31
Trim56-201ENSMUST00000054384 Arhgap4B1AUY3 965 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Actn3O88990 900 aaKnown RBP13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 ThrspQ62264 150 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Myef2Q8C854 591 aaKnown RBP13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Usp33Q8R5K2 909 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 MgarpQ8VI64 283 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Krt5Q922U2 580 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Rnf14Q9JI90 485 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Trim37Q6PCX9 961 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Fchsd1Q6PFY1 688 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Cct8l1Q80YT3 562 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Caps2Q8BUG5 550 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Cdc26Q99JP4 85 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Appbp2Q9DAX9 585 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Atp10dQ8K2X1 1416 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Bach1P97302 739 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Ankrd45Q810N6 248 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Cops6O88545 324 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Parp2O88554 559 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Gna15P30678 374 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 ItkQ03526 625 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Ppp4r4Q8C0Y0 875 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 CutaQ9CQ89 177 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Zfp94E9Q6Y4 486 aa13.08□□□□□ -0.32
Trim56-201ENSMUST00000054384 Mmp8O70138 465 aa13.08□□□□□ -0.32
Retrieved 100 of 22,080 RNA–protein pairs in 377.4 ms