RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W MSG5P38590 489 aa8.12□□□□□ -1.11
UFD1YGR048W CEM1P39525 442 aa8.12□□□□□ -1.11
UFD1YGR048W RCY1P39531 840 aa8.12□□□□□ -1.11
UFD1YGR048W MEF2P39677 819 aa8.12□□□□□ -1.11
UFD1YGR048W GPB2P39717 880 aa8.12□□□□□ -1.11
UFD1YGR048W BIM1P40013 344 aa8.12□□□□□ -1.11
UFD1YGR048W COG2P53271 262 aa8.12□□□□□ -1.11
UFD1YGR048W SNF12P53628 566 aa8.12□□□□□ -1.11
UFD1YGR048W DBP6P53734 629 aaKnown RBP8.12□□□□□ -1.11
UFD1YGR048W BSC5P53755 489 aa8.12□□□□□ -1.11
UFD1YGR048W DID2P69771 204 aa8.12□□□□□ -1.11
UFD1YGR048W RPL6AQ02326 176 aaKnown RBP8.12□□□□□ -1.11
UFD1YGR048W SPC2Q04969 178 aa8.12□□□□□ -1.11
UFD1YGR048W YPL216WQ08964 1102 aa8.12□□□□□ -1.11
UFD1YGR048W ATG34Q12292 412 aa8.12□□□□□ -1.11
UFD1YGR048W HRT3Q12347 344 aa8.12□□□□□ -1.11
UFD1YGR048W GTT2Q12390 233 aa8.12□□□□□ -1.11
UFD1YGR048W YGL041W-AP0C5N3 154 aa8.11□□□□□ -1.11
UFD1YGR048W NFT1P0CE68 1218 aa8.11□□□□□ -1.11
UFD1YGR048W MRP2P10663 115 aaPredicted RBP8.11□□□□□ -1.11
UFD1YGR048W SNF4P12904 322 aa8.11□□□□□ -1.11
UFD1YGR048W ISY1P21374 235 aaPredicted RBP8.11□□□□□ -1.11
UFD1YGR048W PTP2P29461 750 aa8.11□□□□□ -1.11
UFD1YGR048W SSE2P32590 693 aaKnown RBP8.11□□□□□ -1.11
UFD1YGR048W IMP3P32899 183 aaPredicted RBP8.11□□□□□ -1.11
UFD1YGR048W YBP1P38315 674 aa8.11□□□□□ -1.11
UFD1YGR048W YHR218WP38899 603 aa8.11□□□□□ -1.11
UFD1YGR048W ZRG8P40021 1076 aa8.11□□□□□ -1.11
UFD1YGR048W DSE1P40077 573 aa8.11□□□□□ -1.11
UFD1YGR048W ARO8P53090 500 aaKnown RBP8.11□□□□□ -1.11
UFD1YGR048W MND1P53102 219 aa8.11□□□□□ -1.11
UFD1YGR048W ARC35P53731 342 aaKnown RBP8.11□□□□□ -1.11
UFD1YGR048W YNL193WP53870 558 aa8.11□□□□□ -1.11
UFD1YGR048W DLT1Q04216 342 aa8.11□□□□□ -1.11
UFD1YGR048W KAR5Q04746 504 aa8.11□□□□□ -1.11
UFD1YGR048W TFC6Q06339 672 aa8.11□□□□□ -1.11
UFD1YGR048W YLR053CQ12026 108 aa8.11□□□□□ -1.11
UFD1YGR048W RRI2Q12348 645 aa8.11□□□□□ -1.11
UFD1YGR048W SPE4Q12455 300 aa8.11□□□□□ -1.11
UFD1YGR048W FKS3Q04952 1785 aa8.11□□□□□ -1.11
UFD1YGR048W RPS17AP02407 136 aaKnown RBP8.1□□□□□ -1.11
UFD1YGR048W TOP3P13099 656 aa8.1□□□□□ -1.11
UFD1YGR048W RPS17BP14127 136 aaKnown RBP8.1□□□□□ -1.11
UFD1YGR048W CAP1P28495 268 aaKnown RBP8.1□□□□□ -1.11
UFD1YGR048W NUP2P32499 720 aa8.1□□□□□ -1.11
UFD1YGR048W MDJ1P35191 511 aa8.1□□□□□ -1.11
UFD1YGR048W ANR2P36090 516 aaPredicted RBP8.1□□□□□ -1.11
UFD1YGR048W ARA1P38115 344 aa8.1□□□□□ -1.11
UFD1YGR048W MAL31P38156 614 aa8.1□□□□□ -1.11
UFD1YGR048W RRT2P38332 387 aa8.1□□□□□ -1.11
UFD1YGR048W ATG7P38862 630 aa8.1□□□□□ -1.11
UFD1YGR048W MSS4P38994 779 aa8.1□□□□□ -1.11
UFD1YGR048W MNN9P39107 395 aaKnown RBP8.1□□□□□ -1.11
UFD1YGR048W ALA1P40825 983 aaKnown RBP8.1□□□□□ -1.11
UFD1YGR048W RIM21P48565 533 aa8.1□□□□□ -1.11
UFD1YGR048W NAS6P50086 228 aa8.1□□□□□ -1.11
UFD1YGR048W JIP5Q06214 492 aaPredicted RBP8.1□□□□□ -1.11
UFD1YGR048W DBP9Q06218 594 aaKnown RBP8.1□□□□□ -1.11
UFD1YGR048W VTA1Q06263 330 aa8.1□□□□□ -1.11
UFD1YGR048W BRX1Q08235 291 aaKnown RBP8.1□□□□□ -1.11
UFD1YGR048W PPM2Q08282 695 aa8.1□□□□□ -1.11
UFD1YGR048W FLC1Q08967 793 aa8.1□□□□□ -1.11
UFD1YGR048W THP3Q12049 470 aaKnown RBP8.1□□□□□ -1.11
UFD1YGR048W YDR061WQ12298 539 aa8.1□□□□□ -1.11
UFD1YGR048W LDB17Q12342 491 aa8.1□□□□□ -1.11
UFD1YGR048W GRX6Q12438 231 aa8.1□□□□□ -1.11
UFD1YGR048W TCB1Q12466 1186 aa8.1□□□□□ -1.11
UFD1YGR048W MER1P16523 270 aa8.09□□□□□ -1.11
UFD1YGR048W YSP3P25036 478 aa8.09□□□□□ -1.11
UFD1YGR048W RVS161P25343 265 aaKnown RBP8.09□□□□□ -1.11
UFD1YGR048W SNT1P25357 1226 aa8.09□□□□□ -1.11
UFD1YGR048W PTC6P25646 442 aa8.09□□□□□ -1.11
UFD1YGR048W YKL023WP36103 277 aaKnown RBP8.09□□□□□ -1.11
UFD1YGR048W TDP1P38319 544 aa8.09□□□□□ -1.11
UFD1YGR048W HXT5P38695 592 aa8.09□□□□□ -1.11
UFD1YGR048W SEC31P38968 1273 aaKnown RBP8.09□□□□□ -1.11
UFD1YGR048W FAA2P39518 744 aa8.09□□□□□ -1.11
UFD1YGR048W PSY2P40164 858 aa8.09□□□□□ -1.11
UFD1YGR048W YJL049WP47048 450 aa8.09□□□□□ -1.11
UFD1YGR048W MRK1P50873 501 aa8.09□□□□□ -1.11
UFD1YGR048W YPT32P51996 222 aaKnown RBP8.09□□□□□ -1.11
UFD1YGR048W RAI1P53063 387 aaKnown RBP8.09□□□□□ -1.11
UFD1YGR048W SCW11P53189 542 aa8.09□□□□□ -1.11
UFD1YGR048W RTS3P53289 263 aa8.09□□□□□ -1.11
UFD1YGR048W MRPL13Q02204 264 aa8.09□□□□□ -1.11
UFD1YGR048W RSC9Q03124 581 aa8.09□□□□□ -1.11
UFD1YGR048W ADI1Q03677 179 aa8.09□□□□□ -1.11
UFD1YGR048W FEX1Q08913 375 aa8.09□□□□□ -1.11
UFD1YGR048W OXR1Q08952 273 aa8.09□□□□□ -1.11
UFD1YGR048W TY3A-GQ12173 290 aa8.09□□□□□ -1.11
UFD1YGR048W YOR214CQ12282 236 aa8.09□□□□□ -1.11
UFD1YGR048W TY3A-IQ99219 290 aa8.09□□□□□ -1.11
UFD1YGR048W RAP1P11938 827 aa8.08□□□□□ -1.12
UFD1YGR048W VPS34P22543 875 aa8.08□□□□□ -1.12
UFD1YGR048W POL4P25615 582 aa8.08□□□□□ -1.12
UFD1YGR048W TYE7P33122 291 aaPredicted RBP8.08□□□□□ -1.12
UFD1YGR048W RPT3P33298 428 aaKnown RBP8.08□□□□□ -1.12
UFD1YGR048W GDH2P33327 1092 aaKnown RBP8.08□□□□□ -1.12
UFD1YGR048W ATG19P35193 415 aa8.08□□□□□ -1.12
UFD1YGR048W GLY1P37303 387 aaKnown RBP8.08□□□□□ -1.12
Retrieved 100 of 5,963 RNA–protein pairs in 83.3 ms