RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	BEM3	P32873	1128 aa		10.83	□□□□□ -0.68
VPS60	YDR486C	TYE7	P33122	291 aa	Predicted RBP	10.83	□□□□□ -0.68
VPS60	YDR486C	YBR032W	P38223	100 aa		10.83	□□□□□ -0.68
VPS60	YDR486C	CRP1	P38845	465 aa	Known RBP	10.83	□□□□□ -0.68
VPS60	YDR486C	RMD8	P43620	662 aa		10.83	□□□□□ -0.68
VPS60	YDR486C	YNR065C	P53751	1116 aa		10.83	□□□□□ -0.68
VPS60	YDR486C	EFM6	P53970	246 aa		10.83	□□□□□ -0.68
VPS60	YDR486C	ORC3	P54790	616 aa		10.83	□□□□□ -0.68
VPS60	YDR486C	RSB1	Q08417	382 aa		10.83	□□□□□ -0.68
VPS60	YDR486C	CCH1	P50077	2039 aa		10.82	□□□□□ -0.68
VPS60	YDR486C	RPS14A	P06367	137 aa	Known RBP	10.82	□□□□□ -0.68
VPS60	YDR486C	HRR25	P29295	494 aa	Known RBP	10.82	□□□□□ -0.68
VPS60	YDR486C	BEM1	P29366	551 aa		10.82	□□□□□ -0.68
VPS60	YDR486C	RIM1	P32445	135 aa	Known RBP	10.82	□□□□□ -0.68
VPS60	YDR486C	LIP5	P32875	414 aa		10.82	□□□□□ -0.68
VPS60	YDR486C	NEM1	P38757	446 aa		10.82	□□□□□ -0.68
VPS60	YDR486C	LIN1	P38852	340 aa	Predicted RBP	10.82	□□□□□ -0.68
VPS60	YDR486C	RPS14B	P39516	138 aa	Known RBP	10.82	□□□□□ -0.68
VPS60	YDR486C	OAF1	P39720	1047 aa	Predicted RBP	10.82	□□□□□ -0.68
VPS60	YDR486C	RGI2	P40188	164 aa		10.82	□□□□□ -0.68
VPS60	YDR486C	PEP8	P40335	379 aa		10.82	□□□□□ -0.68
VPS60	YDR486C	TES1	P41903	349 aa	Known RBP	10.82	□□□□□ -0.68
VPS60	YDR486C	LIA1	P47120	325 aa	Known RBP	10.82	□□□□□ -0.68
VPS60	YDR486C	CSN12	P47130	423 aa		10.82	□□□□□ -0.68
VPS60	YDR486C	PYK2	P52489	506 aa	Known RBP	10.82	□□□□□ -0.68
VPS60	YDR486C	COG1	P53079	417 aa		10.82	□□□□□ -0.68
VPS60	YDR486C	BUD32	P53323	261 aa		10.82	□□□□□ -0.68
VPS60	YDR486C	YDR132C	Q03900	495 aa		10.82	□□□□□ -0.68
VPS60	YDR486C	RPN9	Q04062	393 aa	Known RBP	10.82	□□□□□ -0.68
VPS60	YDR486C	KCS1	Q12494	1050 aa		10.82	□□□□□ -0.68
VPS60	YDR486C	RMD5	Q12508	421 aa		10.82	□□□□□ -0.68
VPS60	YDR486C	YMR030W-A	Q3E760	96 aa		10.82	□□□□□ -0.68
VPS60	YDR486C	HIS5	P07172	385 aa		10.81	□□□□□ -0.68
VPS60	YDR486C	PUP3	P25451	205 aa	Known RBP	10.81	□□□□□ -0.68
VPS60	YDR486C	IMP3	P32899	183 aa	Predicted RBP	10.81	□□□□□ -0.68
VPS60	YDR486C	SCD5	P34758	872 aa		10.81	□□□□□ -0.68
VPS60	YDR486C	YJL206C	P39529	758 aa		10.81	□□□□□ -0.68
VPS60	YDR486C	PFK26	P40433	827 aa	Known RBP	10.81	□□□□□ -0.68
VPS60	YDR486C	SIP4	P46954	829 aa		10.81	□□□□□ -0.68
VPS60	YDR486C	FLC3	P53121	802 aa		10.81	□□□□□ -0.68
VPS60	YDR486C	PEX8	P53248	589 aa		10.81	□□□□□ -0.68
VPS60	YDR486C	PRM1	P53835	661 aa		10.81	□□□□□ -0.68
VPS60	YDR486C	IMP4	P53941	290 aa	Known RBP	10.81	□□□□□ -0.68
VPS60	YDR486C	PET117	Q02771	107 aa		10.81	□□□□□ -0.68
VPS60	YDR486C	RNY1	Q02933	434 aa	Known RBP	10.81	□□□□□ -0.68
VPS60	YDR486C	TFB2	Q02939	513 aa		10.81	□□□□□ -0.68
VPS60	YDR486C	YMR209C	Q03648	457 aa		10.81	□□□□□ -0.68
VPS60	YDR486C	YPR114W	Q06107	315 aa		10.81	□□□□□ -0.68
VPS60	YDR486C	SYT1	Q06836	1226 aa		10.81	□□□□□ -0.68
VPS60	YDR486C	CLP1	Q08685	445 aa	Predicted RBP	10.81	□□□□□ -0.68
VPS60	YDR486C	RAD59	Q12223	238 aa		10.81	□□□□□ -0.68
VPS60	YDR486C	LEU1	P07264	779 aa	Known RBP	10.8	□□□□□ -0.68
VPS60	YDR486C	GLN4	P13188	809 aa	Known RBP	10.8	□□□□□ -0.68
VPS60	YDR486C	NSP1	P14907	823 aa	Known RBP	10.8	□□□□□ -0.68
VPS60	YDR486C	PMA2	P19657	947 aa		10.8	□□□□□ -0.68
VPS60	YDR486C	MNE1	P24720	663 aa		10.8	□□□□□ -0.68
VPS60	YDR486C	RRP14	P36080	434 aa	Known RBP	10.8	□□□□□ -0.68
VPS60	YDR486C	RPL34B	P40525	121 aa	Known RBP	10.8	□□□□□ -0.68
VPS60	YDR486C	REF2	P42073	533 aa	Predicted RBP	10.8	□□□□□ -0.68
VPS60	YDR486C	UBX4	P54730	416 aa		10.8	□□□□□ -0.68
VPS60	YDR486C	ADE12	P80210	433 aa	Known RBP	10.8	□□□□□ -0.68
VPS60	YDR486C	YDR109C	Q04585	715 aa		10.8	□□□□□ -0.68
VPS60	YDR486C	GSF2	Q04697	403 aa	Known RBP	10.8	□□□□□ -0.68
VPS60	YDR486C	RGS2	Q99188	309 aa		10.8	□□□□□ -0.68
VPS60	YDR486C	YMR084W	A2P2R3	262 aa		10.79	□□□□□ -0.68
VPS60	YDR486C	GCY1	P14065	312 aa	Known RBP RIP-Chip data	10.79	□□□□□ -0.68	not detected
VPS60	YDR486C	AMD1	P15274	810 aa	Known RBP	10.79	□□□□□ -0.68
VPS60	YDR486C	FPR1	P20081	114 aa	Known RBP	10.79	□□□□□ -0.68
VPS60	YDR486C	MRM1	P25270	412 aa		10.79	□□□□□ -0.68
VPS60	YDR486C	EMC1	P25574	760 aa		10.79	□□□□□ -0.68
VPS60	YDR486C	MSH2	P25847	964 aa		10.79	□□□□□ -0.68
VPS60	YDR486C	YJU3	P28321	313 aa		10.79	□□□□□ -0.68
VPS60	YDR486C	GCD11	P32481	527 aa	Known RBP	10.79	□□□□□ -0.68
VPS60	YDR486C	LOS1	P33418	1100 aa	Predicted RBP	10.79	□□□□□ -0.68
VPS60	YDR486C	STE13	P33894	931 aa		10.79	□□□□□ -0.68
VPS60	YDR486C	CTF13	P35203	478 aa		10.79	□□□□□ -0.68
VPS60	YDR486C	YBR062C	P38239	180 aa		10.79	□□□□□ -0.68
VPS60	YDR486C	MNN1	P39106	762 aa		10.79	□□□□□ -0.68
VPS60	YDR486C	TDA10	P42938	290 aa		10.79	□□□□□ -0.68
VPS60	YDR486C	MNT2	P53059	558 aa		10.79	□□□□□ -0.68
VPS60	YDR486C	EMC4	P53073	190 aa		10.79	□□□□□ -0.68
VPS60	YDR486C	LCB5	Q06147	687 aa	Known RBP	10.79	□□□□□ -0.68
VPS60	YDR486C	MCP2	Q06567	569 aa		10.79	□□□□□ -0.68
VPS60	YDR486C	ADY3	Q07732	790 aa		10.79	□□□□□ -0.68
VPS60	YDR486C	MSF1	P08425	469 aa		10.78	□□□□□ -0.68
VPS60	YDR486C	SEC63	P14906	663 aa		10.78	□□□□□ -0.68
VPS60	YDR486C	AMD2	P22580	549 aa		10.78	□□□□□ -0.68
VPS60	YDR486C	AAD3	P25612	363 aa		10.78	□□□□□ -0.68
VPS60	YDR486C	MCM5	P29496	775 aa	Known RBP	10.78	□□□□□ -0.68
VPS60	YDR486C	PXA2	P34230	853 aa		10.78	□□□□□ -0.68
VPS60	YDR486C	SLD2	P34252	453 aa		10.78	□□□□□ -0.68
VPS60	YDR486C	TOM20	P35180	183 aa		10.78	□□□□□ -0.68
VPS60	YDR486C	SQT1	P35184	431 aa		10.78	□□□□□ -0.68
VPS60	YDR486C	PHO11	P35842	467 aa		10.78	□□□□□ -0.68
VPS60	YDR486C	MAK5	P38112	773 aa	Predicted RBP	10.78	□□□□□ -0.68
VPS60	YDR486C	PHO12	P38693	467 aa		10.78	□□□□□ -0.68
VPS60	YDR486C	GND1	P38720	489 aa	Known RBP	10.78	□□□□□ -0.68
VPS60	YDR486C	HOS4	P40480	1083 aa		10.78	□□□□□ -0.68
VPS60	YDR486C	ARH1	P48360	493 aa		10.78	□□□□□ -0.68
VPS60	YDR486C	PAN2	P53010	1115 aa	Predicted RBP	10.78	□□□□□ -0.68

Retrieved 100 of 5,963 RNA–protein pairs in 77.9 ms