RNA–Protein interactions for RNA: YGR009C

SEC9, Transcript of t-SNARE protein required for secretory vesicle-plasma membrane fusion, yeast

Gene SEC9, Length 1,956 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC9	YGR009C	PTP1	P25044	335 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	PAT1	P25644	796 aa	Known RBP	4.95	□□□□□ -1.62
SEC9	YGR009C	APL1	P27351	700 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	COQ8	P27697	501 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	RPC19	P28000	142 aa	Known RBP	4.95	□□□□□ -1.62
SEC9	YGR009C	FRD1	P32614	470 aa	Known RBP	4.95	□□□□□ -1.62
SEC9	YGR009C	SRB2	P34162	210 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	PEX28	P38848	579 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	REV7	P38927	245 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	PIK1	P39104	1066 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	NUP60	P39705	539 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	NIT2	P47016	307 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	NET1	P47035	1189 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	YJR056C	P47115	236 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	NUT1	P53114	1132 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	UTP8	P53276	713 aa	Known RBP	4.95	□□□□□ -1.62
SEC9	YGR009C	SSU72	P53538	206 aa	Predicted RBP	4.95	□□□□□ -1.62
SEC9	YGR009C	RPT6	Q01939	405 aa	Known RBP	4.95	□□□□□ -1.62
SEC9	YGR009C	DCR2	Q05924	578 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	SPO75	Q07798	868 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	GPN2	Q08726	347 aa	Predicted RBP	4.95	□□□□□ -1.62
SEC9	YGR009C	SRO7	Q12038	1033 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	MED2	Q12124	431 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	NTO1	Q12311	748 aa		4.95	□□□□□ -1.62
SEC9	YGR009C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.94	□□□□□ -1.62	not detected
SEC9	YGR009C	RPS24A	P0CX31	135 aa	Known RBP	4.94	□□□□□ -1.62
SEC9	YGR009C	RPS24B	P0CX32	135 aa	Known RBP	4.94	□□□□□ -1.62
SEC9	YGR009C	CDC34	P14682	295 aa		4.94	□□□□□ -1.62
SEC9	YGR009C	TAL1	P15019	335 aa	Known RBP	4.94	□□□□□ -1.62
SEC9	YGR009C	PRP4	P20053	465 aa	Known RBP	4.94	□□□□□ -1.62
SEC9	YGR009C	APA2	P22108	325 aa		4.94	□□□□□ -1.62
SEC9	YGR009C	RVS161	P25343	265 aa	Known RBP	4.94	□□□□□ -1.62
SEC9	YGR009C	ADK2	P26364	225 aa		4.94	□□□□□ -1.62
SEC9	YGR009C	SQT1	P35184	431 aa		4.94	□□□□□ -1.62
SEC9	YGR009C	HMT1	P38074	348 aa		4.94	□□□□□ -1.62
SEC9	YGR009C	KSP1	P38691	1029 aa	Known RBP	4.94	□□□□□ -1.62
SEC9	YGR009C	NTA1	P40354	457 aa		4.94	□□□□□ -1.62
SEC9	YGR009C	SLM1	P40485	686 aa		4.94	□□□□□ -1.62
SEC9	YGR009C	KTR7	P40504	517 aa		4.94	□□□□□ -1.62
SEC9	YGR009C	PML1	Q07930	204 aa	Predicted RBP	4.94	□□□□□ -1.62
SEC9	YGR009C	SET6	Q12529	373 aa		4.94	□□□□□ -1.62
SEC9	YGR009C	MTR10	Q99189	972 aa		4.94	□□□□□ -1.62
SEC9	YGR009C	CCP1	P00431	361 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	PMA1	P05030	918 aa	Known RBP	4.93	□□□□□ -1.62
SEC9	YGR009C	SSA3	P09435	649 aa	Known RBP	4.93	□□□□□ -1.62
SEC9	YGR009C	GID7	P25569	745 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	GEX1	P25596	615 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	KNS1	P32350	737 aa	Predicted RBP	4.93	□□□□□ -1.62
SEC9	YGR009C	PRP19	P32523	503 aa	Known RBP	4.93	□□□□□ -1.62
SEC9	YGR009C	YBL010C	P32788	280 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	YKU70	P32807	602 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	SEC61	P32915	480 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	SRP101	P32916	621 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	DAD2	P36162	133 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	MRPL10	P36520	322 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	NPR2	P39923	615 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	YEL068C	P39977	110 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	PIC2	P40035	300 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	MGS1	P40151	587 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	UBP7	P40453	1071 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	DPH1	P40487	425 aa	Known RBP	4.93	□□□□□ -1.62
SEC9	YGR009C	YIL001W	P40560	513 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	FET4	P40988	552 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	FIG4	P42837	879 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	ILM1	P47155	203 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	GCV2	P49095	1034 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	PRM1	P53835	661 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	MTQ2	Q03920	221 aa	Predicted RBP	4.93	□□□□□ -1.62
SEC9	YGR009C	RAD30	Q04049	632 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	MFB1	Q04922	465 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	DFG5	Q05031	458 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	BLS1	Q06071	122 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	SPO77	Q06134	477 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	LCB5	Q06147	687 aa	Known RBP	4.93	□□□□□ -1.62
SEC9	YGR009C	SDO1	Q07953	250 aa	Known RBP	4.93	□□□□□ -1.62
SEC9	YGR009C	BMT6	Q12291	365 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	GPR1	Q12361	961 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	RRP12	Q12754	1228 aa	Known RBP	4.93	□□□□□ -1.62
SEC9	YGR009C	MET17	P06106	444 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	CHS1	P08004	1131 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	SAM1	P10659	382 aa	Known RBP	4.93	□□□□□ -1.62
SEC9	YGR009C	URA4	P20051	364 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	AEP2	P22136	580 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	CMK2	P22517	447 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	TDP1	P38319	544 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	SOP4	P39543	234 aa	Predicted RBP	4.93	□□□□□ -1.62
SEC9	YGR009C	YER085C	P40058	173 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	IRC24	P40580	263 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	OTU1	P43558	301 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	GTO1	P48239	356 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	RTA1	P53047	317 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	YGR042W	P53227	271 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	PDR16	P53860	351 aa	Known RBP	4.93	□□□□□ -1.62
SEC9	YGR009C	REC102	Q02721	264 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	TRS120	Q04183	1289 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	PDS5	Q04264	1277 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	YML082W	Q04533	649 aa	Known RBP	4.93	□□□□□ -1.62
SEC9	YGR009C	REX4	Q08237	289 aa		4.93	□□□□□ -1.62
SEC9	YGR009C	PUS7	Q08647	676 aa	Known RBP	4.93	□□□□□ -1.62
SEC9	YGR009C	GET4	Q12125	312 aa		4.93	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 14.7 ms