RNA–Protein interactions for RNA: ENST00000498808.5

HDAC6-236, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-236ENST00000498808 TMOD4Q9NZQ9 345 aa19.34■□□□□ 0.69
HDAC6-236ENST00000498808 LTBP2Q14767 1821 aa19.34■□□□□ 0.69
HDAC6-236ENST00000498808 A0A1B0GUL7 405 aa19.33■□□□□ 0.68
HDAC6-236ENST00000498808 ZNF697Q5TEC3 545 aa19.33■□□□□ 0.68
HDAC6-236ENST00000498808 TBC1D9Q6ZT07 1266 aa19.33■□□□□ 0.68
HDAC6-236ENST00000498808 LBHD1Q9BQE6 289 aaPredicted RBP19.33■□□□□ 0.68
HDAC6-236ENST00000498808 SENP6Q9GZR1 1112 aaPredicted RBP19.33■□□□□ 0.68
HDAC6-236ENST00000498808 DNAJC18Q9H819 358 aa19.33■□□□□ 0.68
HDAC6-236ENST00000498808 HMG20BQ9P0W2 317 aa19.33■□□□□ 0.68
HDAC6-236ENST00000498808 DNAH12Q6ZR08 3092 aa19.32■□□□□ 0.68
HDAC6-236ENST00000498808 LDHCP07864 332 aa19.32■□□□□ 0.68
HDAC6-236ENST00000498808 ASNSP08243 561 aa19.32■□□□□ 0.68
HDAC6-236ENST00000498808 PLEKHH3Q7Z736 793 aa19.32■□□□□ 0.68
HDAC6-236ENST00000498808 TEX11Q8IYF3 940 aa19.32■□□□□ 0.68
HDAC6-236ENST00000498808 CDX2Q99626 313 aaPredicted RBP19.32■□□□□ 0.68
HDAC6-236ENST00000498808 PAGR1Q9BTK6 254 aa19.32■□□□□ 0.68
HDAC6-236ENST00000498808 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.32■□□□□ 0.68
HDAC6-236ENST00000498808 C19orf81C9J6K1 198 aa19.31■□□□□ 0.68
HDAC6-236ENST00000498808 GSTO1P78417 241 aa19.31■□□□□ 0.68
HDAC6-236ENST00000498808 MVPQ14764 893 aaKnown RBP19.31■□□□□ 0.68
HDAC6-236ENST00000498808 SH3RF3Q8TEJ3 882 aaPredicted RBP19.31■□□□□ 0.68
HDAC6-236ENST00000498808 FLRT1Q9NZU1 646 aa19.31■□□□□ 0.68
HDAC6-236ENST00000498808 PI4KBQ9UBF8 816 aa19.31■□□□□ 0.68
HDAC6-236ENST00000498808 CDH23Q9H251 3354 aa19.3■□□□□ 0.68
HDAC6-236ENST00000498808 USP17L10C9JJH3 530 aa19.3■□□□□ 0.68
HDAC6-236ENST00000498808 ATN1P54259 1190 aaPredicted RBP19.3■□□□□ 0.68
HDAC6-236ENST00000498808 TFCP2Q12800 502 aa19.3■□□□□ 0.68
HDAC6-236ENST00000498808 MAP2K5Q13163 448 aa19.3■□□□□ 0.68
HDAC6-236ENST00000498808 CCAR1Q8IX12 1150 aaKnown RBP19.3■□□□□ 0.68
HDAC6-236ENST00000498808 MAFAQ8NHW3 353 aaPredicted RBP19.3■□□□□ 0.68
HDAC6-236ENST00000498808 PRUNE2Q8WUY3 3088 aa19.3■□□□□ 0.68
HDAC6-236ENST00000498808 CDK5RAP2Q96SN8 1893 aa19.29■□□□□ 0.68
HDAC6-236ENST00000498808 GDF11O95390 407 aa19.29■□□□□ 0.68
HDAC6-236ENST00000498808 SPATA5Q8NB90 893 aa19.29■□□□□ 0.68
HDAC6-236ENST00000498808 GTF3C2Q8WUA4 911 aaPredicted RBP19.29■□□□□ 0.68
HDAC6-236ENST00000498808 DHX36Q9H2U1 1008 aaKnown RBP19.29■□□□□ 0.68
HDAC6-236ENST00000498808 PRDM6Q9NQX0 595 aa19.29■□□□□ 0.68
HDAC6-236ENST00000498808 EMILIN3Q9NT22 766 aa19.29■□□□□ 0.68
HDAC6-236ENST00000498808 RAI14Q9P0K7 980 aa19.29■□□□□ 0.68
HDAC6-236ENST00000498808 TTC28Q96AY4 2481 aa19.28■□□□□ 0.68
HDAC6-236ENST00000498808 CNMDO75829 334 aa19.28■□□□□ 0.68
HDAC6-236ENST00000498808 RTP1P59025 263 aa19.28■□□□□ 0.68
HDAC6-236ENST00000498808 SHHQ15465 462 aa19.28■□□□□ 0.68
HDAC6-236ENST00000498808 METTL16Q86W50 562 aaKnown RBP19.28■□□□□ 0.68
HDAC6-236ENST00000498808 FAM9BQ8IZU0 186 aa19.28■□□□□ 0.68
HDAC6-236ENST00000498808 EDC3Q96F86 508 aaKnown RBP19.28■□□□□ 0.68
HDAC6-236ENST00000498808 SEMA6BQ9H3T3 888 aa19.28■□□□□ 0.68
HDAC6-236ENST00000498808 DDX20Q9UHI6 824 aaKnown RBP19.28■□□□□ 0.68
HDAC6-236ENST00000498808 ZBTB21Q9ULJ3 1066 aa19.28■□□□□ 0.68
HDAC6-236ENST00000498808 AKAP2Q9Y2D5 859 aa19.28■□□□□ 0.68
HDAC6-236ENST00000498808 NDUFB9Q9Y6M9 179 aa19.28■□□□□ 0.68
HDAC6-236ENST00000498808 RLFQ13129 1914 aa19.27■□□□□ 0.68
HDAC6-236ENST00000498808 ALDH1L2Q3SY69 923 aa19.27■□□□□ 0.68
HDAC6-236ENST00000498808 C9orf50Q5SZB4 431 aa19.27■□□□□ 0.68
HDAC6-236ENST00000498808 MFSD14CQ5VZR4 134 aa19.27■□□□□ 0.68
HDAC6-236ENST00000498808 LPAR1Q92633 364 aa19.27■□□□□ 0.68
HDAC6-236ENST00000498808 NEUROD6Q96NK8 337 aa19.27■□□□□ 0.68
HDAC6-236ENST00000498808 FOCADQ5VW36 1801 aa19.26■□□□□ 0.67
HDAC6-236ENST00000498808 DNM1LO00429 736 aa19.26■□□□□ 0.67
HDAC6-236ENST00000498808 ARID4AP29374 1257 aaPredicted RBP19.26■□□□□ 0.67
HDAC6-236ENST00000498808 MAPKAPK5Q8IW41 473 aa19.26■□□□□ 0.67
HDAC6-236ENST00000498808 MYLIPQ8WY64 445 aa19.26■□□□□ 0.67
HDAC6-236ENST00000498808 MEIS3Q99687 375 aa19.26■□□□□ 0.67
HDAC6-236ENST00000498808 TTYH1Q9H313 450 aaPredicted RBP19.26■□□□□ 0.67
HDAC6-236ENST00000498808 CWC22Q9HCG8 908 aaKnown RBP19.26■□□□□ 0.67
HDAC6-236ENST00000498808 SMC4Q9NTJ3 1288 aa19.26■□□□□ 0.67
HDAC6-236ENST00000498808 GINM1Q9NU53 330 aa19.26■□□□□ 0.67
HDAC6-236ENST00000498808 AATFQ9NY61 560 aaKnown RBP eCLIP19.26■□□□□ 0.672e-7■■■■■ 44.3
HDAC6-236ENST00000498808 PRKAG2Q9UGJ0 569 aa19.26■□□□□ 0.67
HDAC6-236ENST00000498808 FLT1P17948 1338 aa19.25■□□□□ 0.67
HDAC6-236ENST00000498808 MCAMP43121 646 aa19.25■□□□□ 0.67
HDAC6-236ENST00000498808 FOXP4Q8IVH2 680 aaPredicted RBP19.25■□□□□ 0.67
HDAC6-236ENST00000498808 TRPV1Q8NER1 839 aa19.25■□□□□ 0.67
HDAC6-236ENST00000498808 TGFBRAP1Q8WUH2 860 aa19.25■□□□□ 0.67
HDAC6-236ENST00000498808 RABGAP1Q9Y3P9 1069 aa19.25■□□□□ 0.67
HDAC6-236ENST00000498808 MSCO60682 206 aa19.24■□□□□ 0.67
HDAC6-236ENST00000498808 HOXC6P09630 235 aa19.24■□□□□ 0.67
HDAC6-236ENST00000498808 PTPREP23469 700 aa19.24■□□□□ 0.67
HDAC6-236ENST00000498808 CNGA1P29973 690 aa19.24■□□□□ 0.67
HDAC6-236ENST00000498808 USP17L2Q6R6M4 530 aa19.24■□□□□ 0.67
HDAC6-236ENST00000498808 CRACR2BQ8N4Y2 399 aaPredicted RBP19.24■□□□□ 0.67
HDAC6-236ENST00000498808 NPLOC4Q8TAT6 608 aa19.24■□□□□ 0.67
HDAC6-236ENST00000498808 LRP2BPQ9P2M1 347 aa19.24■□□□□ 0.67
HDAC6-236ENST00000498808 PALD1Q9ULE6 856 aa19.24■□□□□ 0.67
HDAC6-236ENST00000498808 ATP11BQ9Y2G3 1177 aa19.24■□□□□ 0.67
HDAC6-236ENST00000498808 SLC15A5A6NIM6 579 aa19.23■□□□□ 0.67
HDAC6-236ENST00000498808 E9PSI1 815 aa19.23■□□□□ 0.67
HDAC6-236ENST00000498808 GLRX3O76003 335 aaKnown RBP19.23■□□□□ 0.67
HDAC6-236ENST00000498808 IGHA2P01877 340 aa19.23■□□□□ 0.67
HDAC6-236ENST00000498808 CYP2C19P33261 490 aa19.23■□□□□ 0.67
HDAC6-236ENST00000498808 WDR78Q5VTH9 848 aa19.23■□□□□ 0.67
HDAC6-236ENST00000498808 ADGRA1Q86SQ6 560 aa19.23■□□□□ 0.67
HDAC6-236ENST00000498808 C12orf42Q96LP6 360 aa19.23■□□□□ 0.67
HDAC6-236ENST00000498808 NOL10Q9BSC4 688 aaKnown RBP19.23■□□□□ 0.67
HDAC6-236ENST00000498808 HDAC5Q9UQL6 1122 aa19.23■□□□□ 0.67
HDAC6-236ENST00000498808 SRGAP3O43295 1099 aa19.22■□□□□ 0.67
HDAC6-236ENST00000498808 ANP32CO43423 234 aa19.22■□□□□ 0.67
HDAC6-236ENST00000498808 PPP4CP60510 307 aa19.22■□□□□ 0.67
HDAC6-236ENST00000498808 CCNA1P78396 465 aa19.22■□□□□ 0.67
HDAC6-236ENST00000498808 SMAD3P84022 425 aaKnown RBP19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms