RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 A930002H24RikQ8C8Y3 163 aa11.52□□□□□ -0.57
Ccdc88a-201ENSMUST00000040182 Cdc42se1Q8BHL7 80 aa11.52□□□□□ -0.57
Ccdc88a-201ENSMUST00000040182 Defb39Q70KL3 74 aa11.51□□□□□ -0.57
Ccdc88a-201ENSMUST00000040182 Prol1E9PYQ4 312 aa11.51□□□□□ -0.57
Ccdc88a-201ENSMUST00000040182 1700018G05RikA0A1B0GSI2 66 aa11.5□□□□□ -0.57
Ccdc88a-201ENSMUST00000040182 AI606181Q8C7B9 129 aa11.5□□□□□ -0.57
Ccdc88a-201ENSMUST00000040182 Sostdc1Q9CQN4 206 aa11.5□□□□□ -0.57
Ccdc88a-201ENSMUST00000040182 Gm10999F6Q4M4 69 aa11.49□□□□□ -0.57
Ccdc88a-201ENSMUST00000040182 Defb50Q6TU36 73 aa11.48□□□□□ -0.57
Ccdc88a-201ENSMUST00000040182 Q8BGJ3 129 aa11.48□□□□□ -0.57
Ccdc88a-201ENSMUST00000040182 Uqcr11Q9CPX8 56 aa11.47□□□□□ -0.57
Ccdc88a-201ENSMUST00000040182 Gm10642Q3TWM1 71 aa11.45□□□□□ -0.58
Ccdc88a-201ENSMUST00000040182 MobpQ9D2P8 170 aa11.45□□□□□ -0.58
Ccdc88a-201ENSMUST00000040182 Gm20661K7N787 53 aa11.43□□□□□ -0.58
Ccdc88a-201ENSMUST00000040182 AplnQ9R0R4 77 aa11.42□□□□□ -0.58
Ccdc88a-201ENSMUST00000040182 Gm44790A0A0N4SV91 103 aa11.39□□□□□ -0.59
Ccdc88a-201ENSMUST00000040182 Hectd1Q69ZR2 2618 aaKnown RBP11.39□□□□□ -0.59
Ccdc88a-201ENSMUST00000040182 Srsf12Q8C8K3 266 aa11.39□□□□□ -0.59
Ccdc88a-201ENSMUST00000040182 PcntP48725 2898 aa11.38□□□□□ -0.59
Ccdc88a-201ENSMUST00000040182 Gm27235Q3UW50 83 aa11.38□□□□□ -0.59
Ccdc88a-201ENSMUST00000040182 Nsd1O88491 2588 aaKnown RBP11.38□□□□□ -0.59
Ccdc88a-201ENSMUST00000040182 Gm10770F7D043 238 aa11.38□□□□□ -0.59
Ccdc88a-201ENSMUST00000040182 E130208F15RikQ3UPV3 143 aa11.37□□□□□ -0.59
Ccdc88a-201ENSMUST00000040182 Gm17689B3GLJ4 109 aa11.36□□□□□ -0.59
Ccdc88a-201ENSMUST00000040182 Gm10300Q8C8P7 189 aa11.36□□□□□ -0.59
Ccdc88a-201ENSMUST00000040182 Mast4Q811L6 2618 aa11.35□□□□□ -0.59
Ccdc88a-201ENSMUST00000040182 Gm9195A0A140LHT4 2805 aa11.35□□□□□ -0.59
Ccdc88a-201ENSMUST00000040182 Coa5Q99M07 74 aa11.34□□□□□ -0.59
Ccdc88a-201ENSMUST00000040182 Defb11Q8R2I7 77 aa11.34□□□□□ -0.59
Ccdc88a-201ENSMUST00000040182 Phxr4P15974 95 aa11.33□□□□□ -0.6
Ccdc88a-201ENSMUST00000040182 Defb37Q7TMD2 62 aa11.33□□□□□ -0.6
Ccdc88a-201ENSMUST00000040182 Krtap26-1Q9D7N2 215 aa11.33□□□□□ -0.6
Ccdc88a-201ENSMUST00000040182 AI854703Q8BIN3 203 aa11.32□□□□□ -0.6
Ccdc88a-201ENSMUST00000040182 RetnlbQ99P86 105 aa11.32□□□□□ -0.6
Ccdc88a-201ENSMUST00000040182 Gpr15lA0A0B4J1N3 78 aa11.31□□□□□ -0.6
Ccdc88a-201ENSMUST00000040182 Rpl37aP61514 92 aa11.28□□□□□ -0.6
Ccdc88a-201ENSMUST00000040182 AW011738F6S7Q2 159 aa11.27□□□□□ -0.61
Ccdc88a-201ENSMUST00000040182 7530416G11RikJ3QJX6 159 aa11.26□□□□□ -0.61
Ccdc88a-201ENSMUST00000040182 Snhg11Q4G0K9 87 aa11.23□□□□□ -0.61
Ccdc88a-201ENSMUST00000040182 Q8BT88 171 aa11.22□□□□□ -0.61
Ccdc88a-201ENSMUST00000040182 Chd6A3KFM7 2711 aa11.21□□□□□ -0.61
Ccdc88a-201ENSMUST00000040182 Prr13Q9CQJ5 137 aa11.21□□□□□ -0.62
Ccdc88a-201ENSMUST00000040182 Gm7276Q3TYW4 209 aa11.18□□□□□ -0.62
Ccdc88a-201ENSMUST00000040182 Spaca4Q80ZQ0 127 aa11.18□□□□□ -0.62
Ccdc88a-201ENSMUST00000040182 Gm10772F7AIG4 85 aa11.17□□□□□ -0.62
Ccdc88a-201ENSMUST00000040182 9530053A07RikE9PVG8 2581 aa11.17□□□□□ -0.62
Ccdc88a-201ENSMUST00000040182 Phf5aP83870 110 aaKnown RBP11.16□□□□□ -0.62
Ccdc88a-201ENSMUST00000040182 Tep1P97499 2629 aa11.15□□□□□ -0.62
Ccdc88a-201ENSMUST00000040182 Defb1P56386 69 aa11.13□□□□□ -0.63
Ccdc88a-201ENSMUST00000040182 Spata3Q9D9T6 193 aa11.11□□□□□ -0.63
Ccdc88a-201ENSMUST00000040182 Rnase13Q5GAM7 153 aa11.09□□□□□ -0.63
Ccdc88a-201ENSMUST00000040182 Krtap24-1G3X9A2 248 aa11.09□□□□□ -0.63
Ccdc88a-201ENSMUST00000040182 Sprr4Q8CGN8 76 aa11.08□□□□□ -0.64
Ccdc88a-201ENSMUST00000040182 CriptO70333 101 aa11.08□□□□□ -0.64
Ccdc88a-201ENSMUST00000040182 Sprr1bQ62267 153 aa11.06□□□□□ -0.64
Ccdc88a-201ENSMUST00000040182 AY074887Q8R5F9 132 aa11.06□□□□□ -0.64
Ccdc88a-201ENSMUST00000040182 NipblQ6KCD5 2798 aaKnown RBP11.04□□□□□ -0.64
Ccdc88a-201ENSMUST00000040182 Col6a5A6H584 2640 aa11.03□□□□□ -0.64
Ccdc88a-201ENSMUST00000040182 Fam168bQ80XQ8 194 aa11.02□□□□□ -0.64
Ccdc88a-201ENSMUST00000040182 Cypt15B1AXS0 87 aa11.02□□□□□ -0.65
Ccdc88a-201ENSMUST00000040182 Gm11213A0A1B0GR83 88 aa11.01□□□□□ -0.65
Ccdc88a-201ENSMUST00000040182 Phxr5P08399 672 aa10.98□□□□□ -0.65
Ccdc88a-201ENSMUST00000040182 Pla2g10Q9QXX3 151 aa10.96□□□□□ -0.66
Ccdc88a-201ENSMUST00000040182 Igsf10Q3V1M1 2594 aa10.95□□□□□ -0.66
Ccdc88a-201ENSMUST00000040182 Lypd5Q9D7Z7 256 aa10.95□□□□□ -0.66
Ccdc88a-201ENSMUST00000040182 Gm5617Q91VN2 117 aa10.94□□□□□ -0.66
Ccdc88a-201ENSMUST00000040182 CenpfE9Q3P4 2997 aaKnown RBP10.94□□□□□ -0.66
Ccdc88a-201ENSMUST00000040182 Itpr3P70227 2670 aa10.93□□□□□ -0.66
Ccdc88a-201ENSMUST00000040182 Gm26620Q9CY65 116 aa10.92□□□□□ -0.66
Ccdc88a-201ENSMUST00000040182 Itpr1P11881 2749 aa10.92□□□□□ -0.66
Ccdc88a-201ENSMUST00000040182 Krtap11-1E9Q2E9 183 aa10.91□□□□□ -0.66
Ccdc88a-201ENSMUST00000040182 Gm21798J3QNU5 87 aa10.9□□□□□ -0.67
Ccdc88a-201ENSMUST00000040182 1810062G17RikG3X8Y2 129 aa10.89□□□□□ -0.67
Ccdc88a-201ENSMUST00000040182 SrcapA0A087WQ44 3271 aa10.87□□□□□ -0.67
Ccdc88a-201ENSMUST00000040182 CnbpP53996 178 aaKnown RBP10.85□□□□□ -0.67
Ccdc88a-201ENSMUST00000040182 Chtf8P0CG14 533 aa10.85□□□□□ -0.67
Ccdc88a-201ENSMUST00000040182 Stab2Q8R4U0 2559 aa10.84□□□□□ -0.67
Ccdc88a-201ENSMUST00000040182 Gm42715A0A087WP63 3095 aaKnown RBP10.83□□□□□ -0.68
Ccdc88a-201ENSMUST00000040182 Zcchc13Q9D548 170 aa10.83□□□□□ -0.68
Ccdc88a-201ENSMUST00000040182 Dnah12Q3V0Q1 3086 aa10.82□□□□□ -0.68
Ccdc88a-201ENSMUST00000040182 A330070K13RikQ8CA53 115 aa10.82□□□□□ -0.68
Ccdc88a-201ENSMUST00000040182 Gm9955Q8CEJ8 102 aa10.81□□□□□ -0.68
Ccdc88a-201ENSMUST00000040182 Eif4ebp3Q80VV3 101 aa10.81□□□□□ -0.68
Ccdc88a-201ENSMUST00000040182 Tnrc18Q80WC3 2878 aa10.78□□□□□ -0.68
Ccdc88a-201ENSMUST00000040182 Fam104aA2A6P4 185 aa10.78□□□□□ -0.68
Ccdc88a-201ENSMUST00000040182 2310034C09RikQ9D746 214 aa10.78□□□□□ -0.68
Ccdc88a-201ENSMUST00000040182 Golgb1E9PVZ8 3238 aa10.74□□□□□ -0.69
Ccdc88a-201ENSMUST00000040182 Defb9Q8R2I6 67 aa10.7□□□□□ -0.7
Ccdc88a-201ENSMUST00000040182 Pkd1l1Q8R526 2615 aa10.7□□□□□ -0.7
Ccdc88a-201ENSMUST00000040182 C530025M09RikF6RGA8 229 aa10.69□□□□□ -0.7
Ccdc88a-201ENSMUST00000040182 Jbts17Q8CE72 3214 aa10.69□□□□□ -0.7
Ccdc88a-201ENSMUST00000040182 Gm9821Q8K076 103 aa10.68□□□□□ -0.7
Ccdc88a-201ENSMUST00000040182 Itpr2Q9Z329 2701 aa10.68□□□□□ -0.7
Ccdc88a-201ENSMUST00000040182 Gm3285A0A1W2P7U0 201 aa10.67□□□□□ -0.7
Ccdc88a-201ENSMUST00000040182 Nbeal2Q6ZQA0 2742 aa10.67□□□□□ -0.7
Ccdc88a-201ENSMUST00000040182 Utp20Q5XG71 2788 aaKnown RBP10.67□□□□□ -0.7
Ccdc88a-201ENSMUST00000040182 Cypt14J3QPF7 87 aa10.65□□□□□ -0.7
Ccdc88a-201ENSMUST00000040182 Ep400Q8CHI8 3072 aaKnown RBP10.65□□□□□ -0.71
Ccdc88a-201ENSMUST00000040182 OxtP35454 125 aa10.65□□□□□ -0.71
Ccdc88a-201ENSMUST00000040182 Gm10065F6TJM2 114 aa10.58□□□□□ -0.72
Retrieved 100 of 22,080 RNA–protein pairs in 48.1 ms