RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Akap13E9Q394 2776 aa11.93□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 4930518I15RikQ3V2W7 57 aa11.93□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 Q9DAB9 146 aa11.93□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 Gm12057A0A087WR21 115 aa11.92□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 Gm10570F6VB42 170 aa11.92□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 Cyyr1Q8VIH7 165 aa11.92□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 Gm5153P01627 120 aa11.92□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 NrgnP60761 78 aa11.92□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 Limd2Q8BGB5 128 aa11.92□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 Gm28230A0A0A0MQ91 144 aa11.91□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 Adm2Q7TNK8 150 aa11.91□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 Fam19a3Q7TPG6 132 aa11.91□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 Cd164Q9R0L9 197 aa11.91□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 Zfand2aQ9JII7 171 aa11.91□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 P01819 144 aa11.9□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 Csdc2Q91YQ3 154 aa11.9□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 Ighv2-2A0A075B5P8 116 aa11.9□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 P01821 116 aa11.9□□□□□ -0.5
Ccdc88a-201ENSMUST00000040182 B230217C12RikE9Q3Z1 139 aa11.89□□□□□ -0.51
Ccdc88a-201ENSMUST00000040182 Rps28P62858 69 aaKnown RBP11.89□□□□□ -0.51
Ccdc88a-201ENSMUST00000040182 Crip2Q9DCT8 208 aaKnown RBP11.88□□□□□ -0.51
Ccdc88a-201ENSMUST00000040182 Fn1P11276 2477 aaKnown RBP11.88□□□□□ -0.51
Ccdc88a-201ENSMUST00000040182 A930009A15RikG3UYI6 118 aa11.87□□□□□ -0.51
Ccdc88a-201ENSMUST00000040182 Gm5464Q3UY29 175 aa11.87□□□□□ -0.51
Ccdc88a-201ENSMUST00000040182 Gm12216A0A1W2P827 62 aa11.87□□□□□ -0.51
Ccdc88a-201ENSMUST00000040182 Odf3l2Q3TZ65 277 aa11.86□□□□□ -0.51
Ccdc88a-201ENSMUST00000040182 Gm26566Q8CAC1 153 aa11.86□□□□□ -0.51
Ccdc88a-201ENSMUST00000040182 Gm43218A0A0G2JGT0 114 aa11.86□□□□□ -0.51
Ccdc88a-201ENSMUST00000040182 Prrc2cQ3TLH4 2846 aaKnown RBP11.85□□□□□ -0.51
Ccdc88a-201ENSMUST00000040182 Spint4Q9D263 159 aa11.85□□□□□ -0.51
Ccdc88a-201ENSMUST00000040182 Znf575Q3TXZ1 239 aa11.85□□□□□ -0.51
Ccdc88a-201ENSMUST00000040182 Gm3443F7CCV5 94 aa11.85□□□□□ -0.51
Ccdc88a-201ENSMUST00000040182 Col4a2P08122 1707 aa11.84□□□□□ -0.51
Ccdc88a-201ENSMUST00000040182 Znf580Q9DB38 172 aa11.83□□□□□ -0.52
Ccdc88a-201ENSMUST00000040182 D730001G18RikA0A087WQU7 115 aa11.83□□□□□ -0.52
Ccdc88a-201ENSMUST00000040182 Rtl10D3YWW5 146 aa11.81□□□□□ -0.52
Ccdc88a-201ENSMUST00000040182 CdsnQ7TPC1 561 aa11.81□□□□□ -0.52
Ccdc88a-201ENSMUST00000040182 Gm10135F6TEE5 83 aa11.8□□□□□ -0.52
Ccdc88a-201ENSMUST00000040182 Gm9767G3X930 207 aa11.8□□□□□ -0.52
Ccdc88a-201ENSMUST00000040182 Gm28374F6SG70 93 aa11.8□□□□□ -0.52
Ccdc88a-201ENSMUST00000040182 Gm10160F6Y577 67 aa11.8□□□□□ -0.52
Ccdc88a-201ENSMUST00000040182 Gm16485Q8C4B7 115 aa11.8□□□□□ -0.52
Ccdc88a-201ENSMUST00000040182 Q9DAA7 145 aa11.8□□□□□ -0.52
Ccdc88a-201ENSMUST00000040182 Cd164l2Q9D6W7 172 aa11.79□□□□□ -0.52
Ccdc88a-201ENSMUST00000040182 Wfdc3Q14AE4 130 aa11.79□□□□□ -0.52
Ccdc88a-201ENSMUST00000040182 SnurfQ9WU12 71 aa11.79□□□□□ -0.52
Ccdc88a-201ENSMUST00000040182 Crip3Q6Q6R3 243 aa11.78□□□□□ -0.52
Ccdc88a-201ENSMUST00000040182 Cox6a2P43023 97 aa11.77□□□□□ -0.52
Ccdc88a-201ENSMUST00000040182 6430550D23RikE9Q1X6 194 aa11.77□□□□□ -0.52
Ccdc88a-201ENSMUST00000040182 Mrpl34Q99N91 92 aa11.77□□□□□ -0.53
Ccdc88a-201ENSMUST00000040182 Gcn1E9PVA8 2671 aaKnown RBP11.77□□□□□ -0.53
Ccdc88a-201ENSMUST00000040182 Msrb1Q9JLC3 116 aa11.77□□□□□ -0.53
Ccdc88a-201ENSMUST00000040182 Cdip1Q9DB75 208 aa11.76□□□□□ -0.53
Ccdc88a-201ENSMUST00000040182 Bean1Q9EQG5 255 aa11.76□□□□□ -0.53
Ccdc88a-201ENSMUST00000040182 Defb38Q7TNV7 63 aa11.75□□□□□ -0.53
Ccdc88a-201ENSMUST00000040182 Pla2g2eQ9QUL3 142 aa11.75□□□□□ -0.53
Ccdc88a-201ENSMUST00000040182 Gm11627A6PWP4 55 aa11.75□□□□□ -0.53
Ccdc88a-201ENSMUST00000040182 Wfdc17Q5SSJ1 76 aa11.74□□□□□ -0.53
Ccdc88a-201ENSMUST00000040182 Krtap16-1A2A5X5 502 aa11.74□□□□□ -0.53
Ccdc88a-201ENSMUST00000040182 Reg3aO09037 175 aa11.74□□□□□ -0.53
Ccdc88a-201ENSMUST00000040182 HrnrQ8VHD8 2496 aa11.73□□□□□ -0.53
Ccdc88a-201ENSMUST00000040182 Lce6aD3YV94 81 aa11.73□□□□□ -0.53
Ccdc88a-201ENSMUST00000040182 Spink13Q3UTS8 97 aa11.72□□□□□ -0.53
Ccdc88a-201ENSMUST00000040182 Ly6g6cQ9Z1Q4 126 aa11.71□□□□□ -0.53
Ccdc88a-201ENSMUST00000040182 Gm9903Q8C9Y8 129 aa11.71□□□□□ -0.53
Ccdc88a-201ENSMUST00000040182 Dmac1Q9CQ00 111 aa11.71□□□□□ -0.54
Ccdc88a-201ENSMUST00000040182 Wisp2Q9Z0G4 251 aa11.7□□□□□ -0.54
Ccdc88a-201ENSMUST00000040182 Map1aQ9QYR6 2776 aa11.69□□□□□ -0.54
Ccdc88a-201ENSMUST00000040182 1600014C23RikQ9DAX4 101 aa11.68□□□□□ -0.54
Ccdc88a-201ENSMUST00000040182 Zfp292Q9Z2U2 2698 aa11.67□□□□□ -0.54
Ccdc88a-201ENSMUST00000040182 3110070M22RikQ9DAQ7 118 aa11.67□□□□□ -0.54
Ccdc88a-201ENSMUST00000040182 FlnaQ8BTM8 2647 aaKnown RBP11.67□□□□□ -0.54
Ccdc88a-201ENSMUST00000040182 2310034G01RikA0A286YDL3 209 aa11.66□□□□□ -0.54
Ccdc88a-201ENSMUST00000040182 Prr9Q8BV84 116 aa11.64□□□□□ -0.55
Ccdc88a-201ENSMUST00000040182 4930507D05RikQ8C9C9 103 aa11.64□□□□□ -0.55
Ccdc88a-201ENSMUST00000040182 FlnbQ80X90 2602 aaKnown RBP11.64□□□□□ -0.55
Ccdc88a-201ENSMUST00000040182 A730009L09RikA0A1B0GS82 72 aa11.64□□□□□ -0.55
Ccdc88a-201ENSMUST00000040182 AtrQ9JKK8 2635 aa11.64□□□□□ -0.55
Ccdc88a-201ENSMUST00000040182 Psors1c2Q80ZC9 134 aa11.63□□□□□ -0.55
Ccdc88a-201ENSMUST00000040182 Gm20538F6Z9R1 75 aa11.61□□□□□ -0.55
Ccdc88a-201ENSMUST00000040182 Elof1P60003 83 aa11.61□□□□□ -0.55
Ccdc88a-201ENSMUST00000040182 Gm10197F6QEY5 67 aa11.61□□□□□ -0.55
Ccdc88a-201ENSMUST00000040182 Mp68P56379 58 aa11.61□□□□□ -0.55
Ccdc88a-201ENSMUST00000040182 Defb10Q8R2I8 73 aa11.6□□□□□ -0.55
Ccdc88a-201ENSMUST00000040182 A530084C06RikQ3UTW2 186 aa11.59□□□□□ -0.55
Ccdc88a-201ENSMUST00000040182 Gm10643Q3URG9 111 aa11.58□□□□□ -0.56
Ccdc88a-201ENSMUST00000040182 Defb45Q3V490 66 aa11.58□□□□□ -0.56
Ccdc88a-201ENSMUST00000040182 Notch1Q01705 2531 aa11.57□□□□□ -0.56
Ccdc88a-201ENSMUST00000040182 Gm21886J3QJU9 214 aa11.57□□□□□ -0.56
Ccdc88a-201ENSMUST00000040182 Igkv8-27A0A0G2JF28 120 aa11.57□□□□□ -0.56
Ccdc88a-201ENSMUST00000040182 Stab1Q8R4Y4 2571 aa11.56□□□□□ -0.56
Ccdc88a-201ENSMUST00000040182 4930519P11RikQ9CUJ8 166 aa11.55□□□□□ -0.56
Ccdc88a-201ENSMUST00000040182 Defb2P82020 71 aa11.55□□□□□ -0.56
Ccdc88a-201ENSMUST00000040182 Bri3P28662 125 aa11.55□□□□□ -0.56
Ccdc88a-201ENSMUST00000040182 Gm16181B0V2H2 73 aa11.54□□□□□ -0.56
Ccdc88a-201ENSMUST00000040182 CrygaP04345 174 aa11.54□□□□□ -0.56
Ccdc88a-201ENSMUST00000040182 Gm10837Q3UTT8 145 aa11.53□□□□□ -0.56
Ccdc88a-201ENSMUST00000040182 Gm10308Q9CVR5 141 aa11.52□□□□□ -0.56
Ccdc88a-201ENSMUST00000040182 Gm26661M0QWV4 156 aa11.52□□□□□ -0.56
Ccdc88a-201ENSMUST00000040182 Znf414Q9DCK4 299 aa11.52□□□□□ -0.56
Retrieved 100 of 22,080 RNA–protein pairs in 49.3 ms