RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Mrpl35Q9CQL6 188 aa11.73□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Szt2A2A9C3 3431 aa11.73□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Usp9xP70398 2559 aaKnown RBP11.73□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 P06328 117 aa11.72□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Gata3P23772 443 aa11.72□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Acyp1P56376 99 aa11.71□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Abca2P41234 2434 aa11.71□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Gm28539A0A087WSL9 92 aa11.71□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Igkv4-74A0A0B4J1I3 119 aa11.71□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Gm44965A0A0N4SVR3 59 aa11.71□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Rbm3O89086 153 aaKnown RBP11.71□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 BtcQ05928 177 aa11.71□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 Gm4861Q8C5A4 106 aa11.71□□□□□ -0.53
Ccdc88b-201ENSMUST00000113440 AcanQ61282 2132 aaKnown RBP11.71□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 B430305J03RikQ8BQQ8 176 aa11.71□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 BC067074F6RXI4 2391 aa11.71□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 A130051J06RikQ8CAU1 227 aa11.7□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 Trav11A0A0B4J1J9 114 aa11.7□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 Cfc1P97766 202 aa11.7□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 Igkv4-58A0A0G2JGI6 119 aa11.69□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 Rnf185Q91YT2 192 aa11.69□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 Ucn2Q99ML8 113 aa11.69□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 Col4a2P08122 1707 aa11.69□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 Gm14137Q8CE97 175 aa11.69□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 Ebi3O35228 228 aa11.69□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 Odf3Q920N1 254 aa11.69□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 Zfp292Q9Z2U2 2698 aa11.68□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 Gm10226O88253 85 aa11.68□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 PlaurP35456 327 aa11.68□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 Vps13aQ5H8C4 3166 aa11.68□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 4930470P17RikQ9D542 155 aa11.68□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 Atp5g3P56384 141 aa11.68□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 Atp5g1Q9CR84 136 aa11.68□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 Triap1Q9D8Z2 76 aa11.68□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 Arid1bE9Q4N7 2244 aa11.67□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 AngP21570 145 aa11.67□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 Ttc28Q80XJ3 2450 aa11.67□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 Rev3lQ61493 3122 aa11.67□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 9430069I07RikQ9CX21 111 aa11.66□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 Cfap126Q6P8X9 189 aa11.66□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 1700010B08RikQ9DAI7 102 aa11.66□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 Klk11Q9QYN3 276 aa11.66□□□□□ -0.54
Ccdc88b-201ENSMUST00000113440 Cox7a1P56392 80 aa11.65□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Ighv2-3A0A075B696 115 aa11.64□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Ang3P97802 145 aa11.64□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Ighv1-75A0A075B5Y2 117 aa11.64□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Q9DAQ5 155 aa11.64□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Tmem223Q9CQE2 199 aaKnown RBP11.63□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Zc2hc1bQ9D534 172 aa11.63□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Nav3Q80TN7 2359 aa11.63□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 TshbP12656 138 aa11.62□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Ighv13-2A0A0A6YWN3 119 aa11.62□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 P18527 97 aa11.62□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 P84751 237 aa11.62□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Tm2d2Q8R0I4 213 aa11.62□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Cox8cA6H666 72 aa11.62□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Bahcc1Q3UHR0 2643 aa11.61□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Rtl10D3YWW5 146 aa11.61□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Prh1P05142 261 aa11.61□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Gata1P17679 413 aa11.61□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Trav13d-1A0A075B606 110 aa11.61□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Trav13n-1A0A0G2JEU8 110 aa11.61□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Gm12353A2AGJ4 60 aa11.61□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 1700056E22RikF7CNM6 234 aa11.61□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Pde6gP09174 87 aa11.61□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Gm16223Q8CBM3 117 aa11.61□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Brk1Q91VR8 75 aa11.61□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Ube2bP63147 152 aa11.6□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Gphb5Q812B2 130 aa11.6□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Myo9aQ8C170 2542 aa11.6□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Ighv8-12A0A0G2JDE1 119 aa11.6□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Ighv1-11A0A0A6YWI9 117 aa11.59□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 4930546C10RikE9Q4Y3 121 aa11.59□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Igf1P05017 153 aa11.59□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Spink8Q09TK9 105 aa11.59□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Eif4ebp1Q60876 117 aa11.59□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 C1qcQ02105 246 aa11.59□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Gm5629P06327 117 aa11.59□□□□□ -0.55
Ccdc88b-201ENSMUST00000113440 Ighv8-5A0A0A6YY60 119 aa11.58□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 Tmem254aP0DN89 123 aa11.58□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 Tmem254bP0DN90 123 aa11.58□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 Tmem254cP0DN91 123 aa11.58□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 Prrc2aQ7TSC1 2158 aaKnown RBP11.58□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 Igkv1-122A0A140T8M9 119 aa11.57□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 Gm12057A0A087WR21 115 aa11.57□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 Igkv8-26A0A075B5N5 123 aa11.57□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 PrcdQ00LT2 53 aa11.57□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 Gm10518F6UQQ9 182 aa11.57□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 Fxyd5P97808 178 aa11.56□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 Ormdl1Q921I0 153 aa11.56□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 Cox7b2Q9D2H1 82 aa11.56□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 Gm1968Q3T9I3 115 aa11.56□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 LhbO09108 141 aa11.56□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 MifP34884 115 aaKnown RBP11.55□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 P01745 121 aa11.54□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 Ppp1r32Q148A4 427 aa11.54□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 Smim1P0C8K7 78 aa11.53□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 Wdr38Q9D994 303 aa11.53□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 Fam222aQ6PGH4 453 aa11.53□□□□□ -0.56
Ccdc88b-201ENSMUST00000113440 FcorP0DJI6 106 aa11.53□□□□□ -0.56
Retrieved 100 of 22,080 RNA–protein pairs in 468.1 ms