RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeastyeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LCB4YOR171C YLF2P38746 405 aa3.41□□□□□ -1.86
LCB4YOR171C SMC2P38989 1170 aaKnown RBP3.41□□□□□ -1.86
LCB4YOR171C SWD1P39706 426 aa3.41□□□□□ -1.86
LCB4YOR171C ALD5P40047 520 aaKnown RBP3.41□□□□□ -1.86
LCB4YOR171C LSM5P40089 93 aaKnown RBP3.41□□□□□ -1.86
LCB4YOR171C YIL161WP40449 235 aaKnown RBP3.41□□□□□ -1.86
LCB4YOR171C EPL1P43572 832 aa3.41□□□□□ -1.86
LCB4YOR171C AIP1P46680 615 aaKnown RBP3.41□□□□□ -1.86
LCB4YOR171C MUP1P50276 574 aa3.41□□□□□ -1.86
LCB4YOR171C EFM5P53200 248 aaKnown RBP3.41□□□□□ -1.86
LCB4YOR171C NOP15P53927 220 aaPredicted RBP3.41□□□□□ -1.86
LCB4YOR171C REC102Q02721 264 aa3.41□□□□□ -1.86
LCB4YOR171C RCR2Q03446 210 aaKnown RBP3.41□□□□□ -1.86
LCB4YOR171C YPS7Q06325 596 aa3.41□□□□□ -1.86
LCB4YOR171C YPR027CQ12079 277 aa3.41□□□□□ -1.86
LCB4YOR171C NTO1Q12311 748 aa3.41□□□□□ -1.86
LCB4YOR171C RPS17AP02407 136 aaKnown RBP3.4□□□□□ -1.87
LCB4YOR171C RPS17BP14127 136 aaKnown RBP3.4□□□□□ -1.87
LCB4YOR171C CDC26P14724 124 aa3.4□□□□□ -1.87
LCB4YOR171C IME1P21190 360 aa3.4□□□□□ -1.87
LCB4YOR171C RNR1P21524 888 aaKnown RBP3.4□□□□□ -1.87
LCB4YOR171C CBP3P21560 335 aa3.4□□□□□ -1.87
LCB4YOR171C PRP28P23394 588 aa3.4□□□□□ -1.87
LCB4YOR171C HRR25P29295 494 aaKnown RBP3.4□□□□□ -1.87
LCB4YOR171C NIP1P32497 812 aaKnown RBP3.4□□□□□ -1.87
LCB4YOR171C SSE1P32589 693 aaKnown RBP3.4□□□□□ -1.87
LCB4YOR171C VPS17P32913 551 aa3.4□□□□□ -1.87
LCB4YOR171C BIT2P38346 545 aa3.4□□□□□ -1.87
LCB4YOR171C DED81P38707 554 aaKnown RBP3.4□□□□□ -1.87
LCB4YOR171C GET2P40056 285 aa3.4□□□□□ -1.87
LCB4YOR171C KAP123P40069 1113 aaKnown RBP3.4□□□□□ -1.87
LCB4YOR171C KHA1P40309 873 aa3.4□□□□□ -1.87
LCB4YOR171C ELO3P40319 345 aa3.4□□□□□ -1.87
LCB4YOR171C YJL068CP40363 299 aa3.4□□□□□ -1.87
LCB4YOR171C CCT7P42943 550 aaKnown RBP3.4□□□□□ -1.87
LCB4YOR171C RMD8P43620 662 aa3.4□□□□□ -1.87
LCB4YOR171C YGR266WP53326 701 aa3.4□□□□□ -1.87
LCB4YOR171C PEX25Q02969 394 aa3.4□□□□□ -1.87
LCB4YOR171C YMR210WQ03649 449 aa3.4□□□□□ -1.87
LCB4YOR171C SKY1Q03656 742 aa3.4□□□□□ -1.87
LCB4YOR171C YMR155WQ03795 547 aa3.4□□□□□ -1.87
LCB4YOR171C MRD1Q06106 887 aaKnown RBP3.4□□□□□ -1.87
LCB4YOR171C KEL3Q08979 651 aaPredicted RBP3.4□□□□□ -1.87
LCB4YOR171C GLE1Q12315 538 aa3.4□□□□□ -1.87
LCB4YOR171C PAR32Q12515 295 aaKnown RBP3.4□□□□□ -1.87
LCB4YOR171C ATG11Q12527 1178 aa3.4□□□□□ -1.87
LCB4YOR171C SSK22P25390 1331 aaPredicted RBP3.4□□□□□ -1.87
LCB4YOR171C MET3P08536 511 aa3.39□□□□□ -1.87
LCB4YOR171C LAT1P12695 482 aaKnown RBP3.39□□□□□ -1.87
LCB4YOR171C GFA1P14742 717 aaKnown RBP3.39□□□□□ -1.87
LCB4YOR171C MSH1P25846 959 aa3.39□□□□□ -1.87
LCB4YOR171C EFT1P32324 842 aaKnown RBP3.39□□□□□ -1.87
LCB4YOR171C HEM12P32347 362 aaPredicted RBP3.39□□□□□ -1.87
LCB4YOR171C YPT7P32939 208 aa3.39□□□□□ -1.87
LCB4YOR171C YKT6P36015 200 aaKnown RBP3.39□□□□□ -1.87
LCB4YOR171C TAF5P38129 798 aa3.39□□□□□ -1.87
LCB4YOR171C RTS1P38903 757 aa3.39□□□□□ -1.87
LCB4YOR171C YEL068CP39977 110 aa3.39□□□□□ -1.87
LCB4YOR171C SEC28P40509 296 aaKnown RBP3.39□□□□□ -1.87
LCB4YOR171C VID28P40547 921 aa3.39□□□□□ -1.87
LCB4YOR171C YIR042CP40586 236 aa3.39□□□□□ -1.87
LCB4YOR171C MKT1P40850 830 aaKnown RBP3.39□□□□□ -1.87
LCB4YOR171C IMA5P40884 581 aa3.39□□□□□ -1.87
LCB4YOR171C BAP3P41815 604 aa3.39□□□□□ -1.87
LCB4YOR171C NOP9P47077 666 aaKnown RBP3.39□□□□□ -1.87
LCB4YOR171C SHE4P51534 789 aa3.39□□□□□ -1.87
LCB4YOR171C MTL1P53214 551 aa3.39□□□□□ -1.87
LCB4YOR171C COX18P53239 316 aa3.39□□□□□ -1.87
LCB4YOR171C GIM3P53900 129 aa3.39□□□□□ -1.87
LCB4YOR171C YPL071CQ02864 156 aa3.39□□□□□ -1.87
LCB4YOR171C ECM38Q05902 660 aaPredicted RBP3.39□□□□□ -1.87
LCB4YOR171C BLS1Q06071 122 aa3.39□□□□□ -1.87
LCB4YOR171C VPS36Q06696 566 aa3.39□□□□□ -1.87
LCB4YOR171C STP4Q07351 490 aa3.39□□□□□ -1.87
LCB4YOR171C VHS3Q08438 674 aa3.39□□□□□ -1.87
LCB4YOR171C PGA3Q12746 312 aaKnown RBP3.39□□□□□ -1.87
LCB4YOR171C ECM3Q99252 613 aa3.39□□□□□ -1.87
LCB4YOR171C CAF20P12962 161 aaKnown RBP3.39□□□□□ -1.87
LCB4YOR171C THR1P17423 357 aaKnown RBP3.39□□□□□ -1.87
LCB4YOR171C COX11P19516 300 aaKnown RBP3.39□□□□□ -1.87
LCB4YOR171C POT1P27796 417 aaKnown RBP RIP-Chip data3.39□□□□□ -1.87not detected
LCB4YOR171C SMI1P32566 505 aa3.39□□□□□ -1.87
LCB4YOR171C PET127P32606 800 aa3.39□□□□□ -1.87
LCB4YOR171C MRP4P32902 394 aa3.39□□□□□ -1.87
LCB4YOR171C CBF5P33322 483 aaKnown RBP RIP-Chip data3.39□□□□□ -1.87not detected
LCB4YOR171C SWH1P35845 1188 aa3.39□□□□□ -1.87
LCB4YOR171C UIP5P36137 443 aa3.39□□□□□ -1.87
LCB4YOR171C VPS45P38932 577 aa3.39□□□□□ -1.87
LCB4YOR171C GDI1P39958 451 aaKnown RBP3.39□□□□□ -1.87
LCB4YOR171C AIM10P39965 576 aaKnown RBP3.39□□□□□ -1.87
LCB4YOR171C SDS3P40505 327 aa3.39□□□□□ -1.87
LCB4YOR171C TRF5P48561 642 aaKnown RBP3.39□□□□□ -1.87
LCB4YOR171C RPN14P53196 417 aa3.39□□□□□ -1.87
LCB4YOR171C DLT1Q04216 342 aa3.39□□□□□ -1.87
LCB4YOR171C NOP6Q07623 225 aaKnown RBP3.39□□□□□ -1.87
LCB4YOR171C SGO1Q08490 590 aa3.39□□□□□ -1.87
LCB4YOR171C ISA2Q12425 185 aa3.39□□□□□ -1.87
LCB4YOR171C FRE6Q12473 712 aa3.39□□□□□ -1.87
LCB4YOR171C PUT4P15380 627 aa3.38□□□□□ -1.87
LCB4YOR171C FRS1P15624 595 aaKnown RBP3.38□□□□□ -1.87
Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms