RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 SLCO4C1Q6ZQN7 724 aa6.97□□□□□ -1.29
VPS41-211ENST00000466017 C8orf86Q6ZUL3 223 aa6.97□□□□□ -1.29
VPS41-211ENST00000466017 IFT43Q96FT9 208 aa6.97□□□□□ -1.29
VPS41-211ENST00000466017 FMNL2Q96PY5 1086 aa6.97□□□□□ -1.29
VPS41-211ENST00000466017 TEX13AQ9BXU3 409 aaPredicted RBP6.97□□□□□ -1.29
VPS41-211ENST00000466017 SHANK3Q9BYB0 1731 aa6.97□□□□□ -1.29
VPS41-211ENST00000466017 GSX2Q9BZM3 304 aa6.97□□□□□ -1.29
VPS41-211ENST00000466017 SUV39H2Q9H5I1 410 aa6.97□□□□□ -1.29
VPS41-211ENST00000466017 MIS18AQ9NYP9 233 aa6.97□□□□□ -1.29
VPS41-211ENST00000466017 ANKIB1Q9P2G1 1089 aa6.97□□□□□ -1.29
VPS41-211ENST00000466017 USP35Q9P2H5 1018 aa6.97□□□□□ -1.29
VPS41-211ENST00000466017 PRR12Q9ULL5 1215 aa6.97□□□□□ -1.29
VPS41-211ENST00000466017 NSFL1CQ9UNZ2 370 aaKnown RBP6.97□□□□□ -1.29
VPS41-211ENST00000466017 STARD13Q9Y3M8 1113 aa6.97□□□□□ -1.29
VPS41-211ENST00000466017 GPC6Q9Y625 555 aaPredicted RBP6.97□□□□□ -1.29
VPS41-211ENST00000466017 KDM3BQ7LBC6 1761 aa6.97□□□□□ -1.29
VPS41-211ENST00000466017 PTPRCP08575 1304 aa6.97□□□□□ -1.29
VPS41-211ENST00000466017 VIRMAQ69YN4 1812 aaKnown RBP6.97□□□□□ -1.29
VPS41-211ENST00000466017 WNK3Q9BYP7 1800 aa6.97□□□□□ -1.29
VPS41-211ENST00000466017 TGFBR3LH3BV60 316 aa6.96□□□□□ -1.3
VPS41-211ENST00000466017 KCNQ3O43525 872 aa6.96□□□□□ -1.3
VPS41-211ENST00000466017 MARSP56192 900 aaKnown RBP6.96□□□□□ -1.3
VPS41-211ENST00000466017 RASSF7Q02833 373 aa6.96□□□□□ -1.3
VPS41-211ENST00000466017 LAMC2Q13753 1193 aa6.96□□□□□ -1.3
VPS41-211ENST00000466017 ATF7IPQ6VMQ6 1270 aa6.96□□□□□ -1.3
VPS41-211ENST00000466017 GOLGA6L1Q8N7Z2 621 aa6.96□□□□□ -1.3
VPS41-211ENST00000466017 MARCH10Q8NA82 808 aaPredicted RBP6.96□□□□□ -1.3
VPS41-211ENST00000466017 PIGBQ92521 554 aa6.96□□□□□ -1.3
VPS41-211ENST00000466017 API5Q9BZZ5 524 aaKnown RBP6.96□□□□□ -1.3
VPS41-211ENST00000466017 CHMP4BQ9H444 224 aaKnown RBP6.96□□□□□ -1.3
VPS41-211ENST00000466017 SMC4Q9NTJ3 1288 aa6.96□□□□□ -1.3
VPS41-211ENST00000466017 ZFATQ9P243 1243 aa6.96□□□□□ -1.3
VPS41-211ENST00000466017 NOB1Q9ULX3 412 aaKnown RBP6.96□□□□□ -1.3
VPS41-211ENST00000466017 CCDC9Q9Y3X0 531 aaKnown RBP6.96□□□□□ -1.3
VPS41-211ENST00000466017 IBTKQ9P2D0 1353 aaPredicted RBP6.95□□□□□ -1.3
VPS41-211ENST00000466017 ELL2O00472 640 aaPredicted RBP6.95□□□□□ -1.3
VPS41-211ENST00000466017 ITGB2P05107 769 aa6.95□□□□□ -1.3
VPS41-211ENST00000466017 ATP2B4P23634 1241 aa6.95□□□□□ -1.3
VPS41-211ENST00000466017 HMGB2P26583 209 aaKnown RBP6.95□□□□□ -1.3
VPS41-211ENST00000466017 RBM6P78332 1123 aaKnown RBP6.95□□□□□ -1.3
VPS41-211ENST00000466017 KRT24Q2M2I5 525 aa6.95□□□□□ -1.3
VPS41-211ENST00000466017 DZIP1LQ8IYY4 767 aaKnown RBP6.95□□□□□ -1.3
VPS41-211ENST00000466017 TTC5Q8N0Z6 440 aa6.95□□□□□ -1.3
VPS41-211ENST00000466017 BHMTQ93088 406 aa6.95□□□□□ -1.3
VPS41-211ENST00000466017 STK31Q9BXU1 1019 aa6.95□□□□□ -1.3
VPS41-211ENST00000466017 DDX21Q9NR30 783 aaKnown RBP eCLIP6.95□□□□□ -1.3
VPS41-211ENST00000466017 PPP4R2Q9NY27 417 aa6.95□□□□□ -1.3
VPS41-211ENST00000466017 TMOD3Q9NYL9 352 aa6.95□□□□□ -1.3
VPS41-211ENST00000466017 DBF4Q9UBU7 674 aaPredicted RBP6.95□□□□□ -1.3
VPS41-211ENST00000466017 GDF2Q9UK05 429 aaPredicted RBP6.95□□□□□ -1.3
VPS41-211ENST00000466017 THSD7AQ9UPZ6 1657 aa6.94□□□□□ -1.3
VPS41-211ENST00000466017 ZBTB42B2RXF5 422 aa6.94□□□□□ -1.3
VPS41-211ENST00000466017 TARSP26639 723 aaKnown RBP6.94□□□□□ -1.3
VPS41-211ENST00000466017 COL8A1P27658 744 aa6.94□□□□□ -1.3
VPS41-211ENST00000466017 ADH6P28332 368 aa6.94□□□□□ -1.3
VPS41-211ENST00000466017 COL9A3Q14050 684 aaPredicted RBP6.94□□□□□ -1.3
VPS41-211ENST00000466017 INTS3Q68E01 1043 aaKnown RBP6.94□□□□□ -1.3
VPS41-211ENST00000466017 CHSY3Q70JA7 882 aa6.94□□□□□ -1.3
VPS41-211ENST00000466017 KRT25Q7Z3Z0 450 aa6.94□□□□□ -1.3
VPS41-211ENST00000466017 TREML1Q86YW5 311 aa6.94□□□□□ -1.3
VPS41-211ENST00000466017 SMARCC1Q92922 1105 aaPredicted RBP6.94□□□□□ -1.3
VPS41-211ENST00000466017 ZNF496Q96IT1 587 aaPredicted RBP6.94□□□□□ -1.3
VPS41-211ENST00000466017 ATG3Q9NT62 314 aa6.94□□□□□ -1.3
VPS41-211ENST00000466017 HYPKQ9NX55 129 aa6.94□□□□□ -1.3
VPS41-211ENST00000466017 GLI3P10071 1580 aa6.94□□□□□ -1.3
VPS41-211ENST00000466017 PLIN1O60240 522 aa6.93□□□□□ -1.3
VPS41-211ENST00000466017 TRIM27P14373 513 aa6.93□□□□□ -1.3
VPS41-211ENST00000466017 SSFA2P28290 1259 aa6.93□□□□□ -1.3
VPS41-211ENST00000466017 SLC39A6Q13433 755 aa6.93□□□□□ -1.3
VPS41-211ENST00000466017 MTMR3Q13615 1198 aa6.93□□□□□ -1.3
VPS41-211ENST00000466017 MVPQ14764 893 aaKnown RBP6.93□□□□□ -1.3
VPS41-211ENST00000466017 IER5Q5VY09 327 aa6.93□□□□□ -1.3
VPS41-211ENST00000466017 KCTD17Q8N5Z5 321 aa6.93□□□□□ -1.3
VPS41-211ENST00000466017 VTI1AQ96AJ9 217 aa6.93□□□□□ -1.3
VPS41-211ENST00000466017 RRAGCQ9HB90 399 aa6.93□□□□□ -1.3
VPS41-211ENST00000466017 LRRC4BQ9NT99 713 aa6.93□□□□□ -1.3
VPS41-211ENST00000466017 USP16Q9Y5T5 823 aa6.93□□□□□ -1.3
VPS41-211ENST00000466017 ABCC4O15439 1325 aa6.93□□□□□ -1.3
VPS41-211ENST00000466017 SASH3O75995 380 aa6.92□□□□□ -1.3
VPS41-211ENST00000466017 DGKGP49619 791 aa6.92□□□□□ -1.3
VPS41-211ENST00000466017 PLAURQ03405 335 aa6.92□□□□□ -1.3
VPS41-211ENST00000466017 C16orf46Q6P387 395 aa6.92□□□□□ -1.3
VPS41-211ENST00000466017 FAM196AQ6ZSG2 479 aa6.92□□□□□ -1.3
VPS41-211ENST00000466017 LRP10Q7Z4F1 713 aa6.92□□□□□ -1.3
VPS41-211ENST00000466017 ATCAYQ86WG3 371 aa6.92□□□□□ -1.3
VPS41-211ENST00000466017 RGL4Q8IZJ4 473 aa6.92□□□□□ -1.3
VPS41-211ENST00000466017 FRAT1Q92837 279 aaPredicted RBP6.92□□□□□ -1.3
VPS41-211ENST00000466017 CRBNQ96SW2 442 aa6.92□□□□□ -1.3
VPS41-211ENST00000466017 BCL2L13Q9BXK5 485 aa6.92□□□□□ -1.3
VPS41-211ENST00000466017 IGFLR1Q9H665 355 aa6.92□□□□□ -1.3
VPS41-211ENST00000466017 ENAMQ9NRM1 1142 aa6.92□□□□□ -1.3
VPS41-211ENST00000466017 DDX19BQ9UMR2 479 aa6.92□□□□□ -1.3
VPS41-211ENST00000466017 RTCBQ9Y3I0 505 aaKnown RBP6.92□□□□□ -1.3
VPS41-211ENST00000466017 KCNMB2Q9Y691 235 aa6.92□□□□□ -1.3
VPS41-211ENST00000466017 KAT6BQ8WYB5 2073 aa6.92□□□□□ -1.3
VPS41-211ENST00000466017 UBR2Q8IWV8 1755 aa6.92□□□□□ -1.3
VPS41-211ENST00000466017 ITGB4P16144 1822 aa6.92□□□□□ -1.3
VPS41-211ENST00000466017 PAPPAQ13219 1627 aa6.91□□□□□ -1.3
VPS41-211ENST00000466017 SIN3BO75182 1162 aa6.91□□□□□ -1.3
VPS41-211ENST00000466017 GDF11O95390 407 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 130.8 ms