RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 COL17A1Q9UMD9 1497 aaPredicted RBP7.03□□□□□ -1.28
USP48-202ENST00000374730 PBRM1Q86U86 1689 aa7.03□□□□□ -1.28
USP48-202ENST00000374730 PDIA4P13667 645 aaKnown RBP7.02□□□□□ -1.29
USP48-202ENST00000374730 HCLS1P14317 486 aaPredicted RBP7.02□□□□□ -1.29
USP48-202ENST00000374730 LLGL2Q6P1M3 1020 aa7.02□□□□□ -1.29
USP48-202ENST00000374730 RNF214Q8ND24 703 aa7.02□□□□□ -1.29
USP48-202ENST00000374730 ACSBG1Q96GR2 724 aa7.02□□□□□ -1.29
USP48-202ENST00000374730 CCDC39Q9UFE4 941 aa7.02□□□□□ -1.29
USP48-202ENST00000374730 PCOLCE2Q9UKZ9 415 aa7.02□□□□□ -1.29
USP48-202ENST00000374730 CLSPNQ9HAW4 1339 aa7.01□□□□□ -1.29
USP48-202ENST00000374730 THOC2Q8NI27 1593 aaKnown RBP7.01□□□□□ -1.29
USP48-202ENST00000374730 LRRC9Q6ZRR7 1453 aa7.01□□□□□ -1.29
USP48-202ENST00000374730 RNGTTO60942 597 aaKnown RBP7.01□□□□□ -1.29
USP48-202ENST00000374730 FBXO24O75426 580 aa7.01□□□□□ -1.29
USP48-202ENST00000374730 PAGE1O75459 146 aa7.01□□□□□ -1.29
USP48-202ENST00000374730 NEFMP07197 916 aa7.01□□□□□ -1.29
USP48-202ENST00000374730 ISL2Q96A47 359 aa7.01□□□□□ -1.29
USP48-202ENST00000374730 FBXL18Q96ME1 805 aa7.01□□□□□ -1.29
USP48-202ENST00000374730 CYP8B1Q9UNU6 501 aa7.01□□□□□ -1.29
USP48-202ENST00000374730 GAPVD1Q14C86 1478 aa7□□□□□ -1.29
USP48-202ENST00000374730 CCNB3Q8WWL7 1395 aa7□□□□□ -1.29
USP48-202ENST00000374730 CELA3AP09093 270 aa7□□□□□ -1.29
USP48-202ENST00000374730 EIF4BP23588 611 aaKnown RBP7□□□□□ -1.29
USP48-202ENST00000374730 CDK5R2Q13319 367 aa7□□□□□ -1.29
USP48-202ENST00000374730 SV2BQ7L1I2 683 aa7□□□□□ -1.29
USP48-202ENST00000374730 GRIN3AQ8TCU5 1115 aa7□□□□□ -1.29
USP48-202ENST00000374730 LGR6Q9HBX8 967 aa7□□□□□ -1.29
USP48-202ENST00000374730 LRRC4CQ9HCJ2 640 aa7□□□□□ -1.29
USP48-202ENST00000374730 ZC3H7BQ9UGR2 993 aaKnown RBP7□□□□□ -1.29
USP48-202ENST00000374730 CASKIN1Q8WXD9 1431 aa7□□□□□ -1.29
USP48-202ENST00000374730 ANKRD33BA6NCL7 494 aa6.99□□□□□ -1.29
USP48-202ENST00000374730 FAM87AP0C7U9 286 aa6.99□□□□□ -1.29
USP48-202ENST00000374730 PCNX4Q63HM2 1172 aa6.99□□□□□ -1.29
USP48-202ENST00000374730 NFXL1Q6ZNB6 911 aa6.99□□□□□ -1.29
USP48-202ENST00000374730 AEBP1Q8IUX7 1158 aa6.99□□□□□ -1.29
USP48-202ENST00000374730 TTF2Q9UNY4 1162 aaKnown RBP6.99□□□□□ -1.29
USP48-202ENST00000374730 RING1Q06587 406 aa6.98□□□□□ -1.29
USP48-202ENST00000374730 EAPPQ56P03 285 aaPredicted RBP6.98□□□□□ -1.29
USP48-202ENST00000374730 RASIP1Q5U651 963 aa6.98□□□□□ -1.29
USP48-202ENST00000374730 MPRIPQ6WCQ1 1025 aa6.98□□□□□ -1.29
USP48-202ENST00000374730 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.98□□□□□ -1.29
USP48-202ENST00000374730 MKNK2Q9HBH9 465 aa6.98□□□□□ -1.29
USP48-202ENST00000374730 AK5Q9Y6K8 562 aa6.98□□□□□ -1.29
USP48-202ENST00000374730 FMN1Q68DA7 1419 aa6.98□□□□□ -1.29
USP48-202ENST00000374730 ADAMTS12P58397 1594 aa6.98□□□□□ -1.29
USP48-202ENST00000374730 LRRIQ1Q96JM4 1722 aa6.98□□□□□ -1.29
USP48-202ENST00000374730 SNAPC4Q5SXM2 1469 aa6.98□□□□□ -1.29
USP48-202ENST00000374730 MRC2Q9UBG0 1479 aa6.98□□□□□ -1.29
USP48-202ENST00000374730 DHX57Q6P158 1386 aaKnown RBP6.97□□□□□ -1.29
USP48-202ENST00000374730 FANCGO15287 622 aa6.97□□□□□ -1.29
USP48-202ENST00000374730 NTF4P34130 210 aa6.97□□□□□ -1.29
USP48-202ENST00000374730 FHOD3Q2V2M9 1422 aa6.97□□□□□ -1.29
USP48-202ENST00000374730 PPM1JQ5JR12 505 aa6.97□□□□□ -1.29
USP48-202ENST00000374730 ABI1Q8IZP0 508 aa6.97□□□□□ -1.29
USP48-202ENST00000374730 STK11IPQ8N1F8 1099 aa6.97□□□□□ -1.29
USP48-202ENST00000374730 AGBL5Q8NDL9 886 aa6.97□□□□□ -1.29
USP48-202ENST00000374730 MISP3Q96FF7 219 aa6.97□□□□□ -1.29
USP48-202ENST00000374730 DUSP23Q9BVJ7 150 aa6.97□□□□□ -1.29
USP48-202ENST00000374730 SSU72Q9NP77 194 aaKnown RBP6.97□□□□□ -1.29
USP48-202ENST00000374730 ADGRE2Q9UHX3 823 aa6.97□□□□□ -1.29
USP48-202ENST00000374730 WDR62O43379 1518 aa6.96□□□□□ -1.29
USP48-202ENST00000374730 ZBTB37Q5TC79 503 aa6.96□□□□□ -1.3
USP48-202ENST00000374730 NPAS4Q8IUM7 802 aa6.96□□□□□ -1.3
USP48-202ENST00000374730 KCT2Q8NC54 265 aa6.96□□□□□ -1.3
USP48-202ENST00000374730 GAL3ST3Q96A11 431 aa6.96□□□□□ -1.3
USP48-202ENST00000374730 DUSP9Q99956 384 aaKnown RBP6.96□□□□□ -1.3
USP48-202ENST00000374730 PCDHA4Q9UN74 947 aa6.96□□□□□ -1.3
USP48-202ENST00000374730 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.95□□□□□ -1.3
USP48-202ENST00000374730 DCDC2CA8MYV0 355 aa6.95□□□□□ -1.3
USP48-202ENST00000374730 TAL1P17542 331 aaPredicted RBP6.95□□□□□ -1.3
USP48-202ENST00000374730 RPS26P62854 115 aaKnown RBP6.95□□□□□ -1.3
USP48-202ENST00000374730 DNAJC14Q6Y2X3 702 aaPredicted RBP6.95□□□□□ -1.3
USP48-202ENST00000374730 FLCNQ8NFG4 579 aa6.95□□□□□ -1.3
USP48-202ENST00000374730 NETO1Q8TDF5 533 aa6.95□□□□□ -1.3
USP48-202ENST00000374730 PICK1Q9NRD5 415 aa6.95□□□□□ -1.3
USP48-202ENST00000374730 GRIN2BQ13224 1484 aa6.94□□□□□ -1.3
USP48-202ENST00000374730 PAX4O43316 350 aa6.94□□□□□ -1.3
USP48-202ENST00000374730 LEFTY1O75610 366 aa6.94□□□□□ -1.3
USP48-202ENST00000374730 TTBK2Q6IQ55 1244 aa6.94□□□□□ -1.3
USP48-202ENST00000374730 CBLL1Q75N03 491 aa6.94□□□□□ -1.3
USP48-202ENST00000374730 TP53INP2Q8IXH6 220 aa6.94□□□□□ -1.3
USP48-202ENST00000374730 TOP6BLQ8N6T0 577 aa6.94□□□□□ -1.3
USP48-202ENST00000374730 BCL7CQ8WUZ0 217 aaPredicted RBP6.94□□□□□ -1.3
USP48-202ENST00000374730 ELMO3Q96BJ8 720 aa6.94□□□□□ -1.3
USP48-202ENST00000374730 PAK6Q9NQU5 681 aaPredicted RBP6.94□□□□□ -1.3
USP48-202ENST00000374730 SLC5A6Q9Y289 635 aa6.94□□□□□ -1.3
USP48-202ENST00000374730 CSADQ9Y600 493 aa6.94□□□□□ -1.3
USP48-202ENST00000374730 PHLDB1Q86UU1 1377 aa6.94□□□□□ -1.3
USP48-202ENST00000374730 TDRD9Q8NDG6 1382 aaKnown RBP6.94□□□□□ -1.3
USP48-202ENST00000374730 IFT140Q96RY7 1462 aa6.93□□□□□ -1.3
USP48-202ENST00000374730 EHBP1L1Q8N3D4 1523 aa6.93□□□□□ -1.3
USP48-202ENST00000374730 CCDC85BQ15834 202 aaPredicted RBP6.93□□□□□ -1.3
USP48-202ENST00000374730 DIEXFQ68CQ4 756 aaKnown RBP6.93□□□□□ -1.3
USP48-202ENST00000374730 C12orf40Q86WS4 652 aa6.93□□□□□ -1.3
USP48-202ENST00000374730 KRTAP9-2Q9BYQ4 174 aa6.93□□□□□ -1.3
USP48-202ENST00000374730 IQGAP2Q13576 1575 aa6.93□□□□□ -1.3
USP48-202ENST00000374730 SUPT6HQ7KZ85 1726 aaKnown RBP6.93□□□□□ -1.3
USP48-202ENST00000374730 HECW1Q76N89 1606 aa6.92□□□□□ -1.3
USP48-202ENST00000374730 CEACAM5P06731 702 aa6.92□□□□□ -1.3
USP48-202ENST00000374730 OXCT1P55809 520 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms