RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Igkv4-79A0A075B5L8 119 aa13.3□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 Igkv4-69A0A0B4J1I6 116 aa13.3□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 P01680 129 aa13.3□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 Gm2174F6ZVF2 133 aa13.3□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 Chchd5Q9CQP3 110 aa13.3□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 P06330 118 aa13.29□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 Atp5eP56382 52 aa13.29□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 Olfr313Q5NC55 308 aa13.29□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 Trav9d-1A0A075B699 112 aa13.29□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 Atp6v0e1Q9CQD8 81 aa13.29□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 Ly6g5bQ8K1T4 194 aa13.29□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 ArtnQ9Z0L2 224 aa13.29□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 Stpg1Q9D2F5 341 aa13.29□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 Tmem200bD3Z0P8 284 aa13.29□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 Foxf1Q61080 378 aa13.29□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 Tmem243B2RVB9 118 aa13.28□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 Ighv3-4A0A0A6YXF1 117 aa13.28□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 Sdhaf1Q3U276 118 aa13.28□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 Olfr312Q7TRZ9 308 aa13.28□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 F930015N05RikQ8C3A3 210 aa13.28□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 Lyrm9Q3UN90 78 aa13.28□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 Mbd6Q3TY92 1003 aa13.27□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 Gm10192Q3V0S1 108 aa13.27□□□□□ -0.28
Ccdc88a-201ENSMUST00000040182 Igkv4-58A0A0G2JGI6 119 aa13.27□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Rbm3O89086 153 aaKnown RBP13.27□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Znf740Q6NZQ6 180 aa13.27□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Igkv4-78A0A0A6YYE5 119 aa13.26□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Ang2Q64438 145 aa13.26□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Kiaa1549Q68FD9 1940 aa13.26□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Tnfrsf26P83626 204 aa13.26□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Gm815Q3UWS2 115 aa13.26□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Il22ra2Q80XF5 230 aa13.26□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Slc25a48Q8BW66 306 aa13.26□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Pfn2Q9JJV2 140 aa13.26□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Trav4d-3A0A075B625 110 aa13.26□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Mrpl52Q9D0Y8 121 aa13.25□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Atp23Q9CWQ3 201 aa13.25□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Ndufa12Q7TMF3 145 aaKnown RBP13.25□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Pglyrp1O88593 182 aa13.25□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 P01837 106 aa13.25□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Zfyve26Q5DU37 2529 aa13.25□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Spink8Q09TK9 105 aa13.25□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 A0A1L1SR50 188 aa13.25□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Defb3Q9WTL0 63 aa13.25□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 OtoglF7A4A7 2325 aa13.25□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 GfyJ3KML8 504 aa13.24□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Flg2Q2VIS4 2362 aa13.24□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Gm12353A2AGJ4 60 aa13.24□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Gm4744D3Z3S5 154 aa13.24□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Ube2e2Q91W82 201 aa13.24□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 PemtQ61907 199 aa13.24□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Gm12830F6XVH0 157 aa13.24□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Fam24aQ8CF27 98 aa13.24□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Fam216bQ8CC14 138 aa13.23□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Slc25a29Q8BL03 306 aa13.23□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Them7Q9DCP4 223 aa13.23□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Prdm6Q3UZD5 596 aa13.23□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Pou2af1Q64693 256 aa13.23□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Trav6n-6A0A075B6B2 114 aa13.22□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Igkv6-13A0A0G2JGY3 119 aa13.22□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Synj2bpQ9D6K5 145 aa13.22□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Tm2d3Q8BJ83 261 aa13.22□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Cd33Q63994 403 aa13.22□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Igkv4-74A0A0B4J1I3 119 aa13.22□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 P01786 117 aa13.22□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Cox7cP17665 63 aa13.22□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Atp5g3P56384 141 aa13.22□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Atp5g1Q9CR84 136 aa13.22□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Igkv4-57A0A0A6YYE7 117 aa13.22□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Lhfpl1Q80SV1 220 aa13.22□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Lect2O88803 151 aa13.21□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Fam110aQ8R184 296 aa13.21□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 P01787 123 aa13.21□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 P18528 98 aa13.21□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Ociad2Q9D8W7 154 aa13.21□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Sp5Q9JHX2 398 aa13.21□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Bex1Q9R224 128 aa13.21□□□□□ -0.29
Ccdc88a-201ENSMUST00000040182 Tpsg1Q9QUL7 311 aa13.21□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 BikO70337 150 aa13.2□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Fxyd7P59648 80 aa13.2□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Ighv3-6P18531 116 aa13.2□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 PifoQ9D9W1 207 aa13.2□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Trav9d-4A0A0G2JG37 103 aa13.2□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 KprpB2RUR4 657 aa13.2□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 P01788 123 aa13.2□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Trav6-6A0A075B603 114 aa13.19□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Ighv5-8A0A075B676 92 aa13.19□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 B1ARW8 110 aa13.19□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Edn3P48299 214 aa13.19□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Inafm1E9PV59 130 aa13.19□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 P01756 117 aa13.19□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 P01757 117 aa13.19□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Gata1P17679 413 aa13.19□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Sslp1Q3UN54 99 aa13.19□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Trav12-3A0A075B648 115 aa13.19□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Acyp1P56376 99 aa13.18□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Zfp951A0A087WRH0 451 aa13.18□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Igkv6-15A0A140T8M5 115 aa13.18□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Erdr1J3QMM0 206 aa13.18□□□□□ -0.3
Ccdc88a-201ENSMUST00000040182 Tln1P26039 2541 aaKnown RBP13.18□□□□□ -0.3
Retrieved 100 of 22,080 RNA–protein pairs in 55.1 ms