RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 UQCR11O14957 56 aa9.06□□□□□ -0.96
PNKP-216ENST00000601816 LCE1DQ5T752 114 aa9.06□□□□□ -0.96
PNKP-216ENST00000601816 LCE4AQ5TA78 99 aa9.05□□□□□ -0.96
PNKP-216ENST00000601816 KRTAP4-3Q9BYR4 195 aa9.03□□□□□ -0.96
PNKP-216ENST00000601816 MT4P47944 62 aa8.95□□□□□ -0.98
PNKP-216ENST00000601816 KRTAP12-3P60328 96 aa8.94□□□□□ -0.98
PNKP-216ENST00000601816 HMCN1Q96RW7 5635 aa8.88□□□□□ -0.99
PNKP-216ENST00000601816 MIR22HGQ0VDD5 57 aa8.85□□□□□ -0.99
PNKP-216ENST00000601816 KRTAP5-4Q6L8H1 288 aa8.84□□□□□ -0.99
PNKP-216ENST00000601816 KRTAP4-7Q9BYR0 210 aa8.8□□□□□ -1
PNKP-216ENST00000601816 KRTAP25-1Q3LHN0 102 aa8.76□□□□□ -1.01
PNKP-216ENST00000601816 K7ERS5 55 aa8.72□□□□□ -1.01
PNKP-216ENST00000601816 KRTAP4-6Q9BYQ5 205 aa8.67□□□□□ -1.02
PNKP-216ENST00000601816 V9GYY9 64 aa8.65□□□□□ -1.02
PNKP-216ENST00000601816 PSPHP1O15172 72 aa8.62□□□□□ -1.03
PNKP-216ENST00000601816 AHNAK2Q8IVF2 5795 aa8.61□□□□□ -1.03
PNKP-216ENST00000601816 Q1T7F1 81 aa8.55□□□□□ -1.04
PNKP-216ENST00000601816 KRTAP5-5Q701N2 237 aaPredicted RBP8.48□□□□□ -1.05
PNKP-216ENST00000601816 KRTAP5-10Q6L8G5 202 aa8.43□□□□□ -1.06
PNKP-216ENST00000601816 KRTAP19-4Q3LI73 84 aa8.42□□□□□ -1.06
PNKP-216ENST00000601816 KRTAP23-1A1A580 65 aa8.41□□□□□ -1.06
PNKP-216ENST00000601816 KRTAP20-2Q3LI61 65 aa8.37□□□□□ -1.07
PNKP-216ENST00000601816 LOC100996750A0A140TA64 210 aa8.34□□□□□ -1.07
PNKP-216ENST00000601816 A6NED7 52 aa8.34□□□□□ -1.07
PNKP-216ENST00000601816 KRTAP15-1Q3LI76 137 aa8.33□□□□□ -1.08
PNKP-216ENST00000601816 SPRR5A0A1B0GTR4 108 aa8.32□□□□□ -1.08
PNKP-216ENST00000601816 KRTAP12-4P60329 112 aa8.3□□□□□ -1.08
PNKP-216ENST00000601816 PCP4P48539 62 aa8.25□□□□□ -1.09
PNKP-216ENST00000601816 KRTAP5-3Q6L8H2 238 aa8.24□□□□□ -1.09
PNKP-216ENST00000601816 CDC42SE1Q9NRR8 79 aa8.23□□□□□ -1.09
PNKP-216ENST00000601816 LCE3CQ5T5A8 94 aa8.21□□□□□ -1.1
PNKP-216ENST00000601816 SYNE1Q8NF91 8797 aaKnown RBP8.16□□□□□ -1.1
PNKP-216ENST00000601816 KRTAP5-7Q6L8G8 165 aa8.12□□□□□ -1.11
PNKP-216ENST00000601816 ROMO1P60602 79 aa8.09□□□□□ -1.11
PNKP-216ENST00000601816 RPS28P62857 69 aaKnown RBP8□□□□□ -1.13
PNKP-216ENST00000601816 MT1AP04731 61 aa7.89□□□□□ -1.15
PNKP-216ENST00000601816 KRTAP6-1Q3LI64 71 aa7.84□□□□□ -1.15
PNKP-216ENST00000601816 KRTAP5-2Q701N4 177 aa7.75□□□□□ -1.17
PNKP-216ENST00000601816 KRTAP9-6A8MVA2 160 aa7.73□□□□□ -1.17
PNKP-216ENST00000601816 KRTAP4-11Q9BYQ6 195 aa7.65□□□□□ -1.18
PNKP-216ENST00000601816 KRTAP9-4Q9BYQ2 154 aa7.63□□□□□ -1.19
PNKP-216ENST00000601816 KRTAP6-2Q3LI66 62 aa7.51□□□□□ -1.21
PNKP-216ENST00000601816 KRTAP5-8O75690 187 aa7.39□□□□□ -1.23
PNKP-216ENST00000601816 OBSCNQ5VST9 7968 aa7.27□□□□□ -1.25
PNKP-216ENST00000601816 MT3P25713 68 aa7.23□□□□□ -1.25
PNKP-216ENST00000601816 AHNAKQ09666 5890 aaKnown RBP7.09□□□□□ -1.27
PNKP-216ENST00000601816 MUC5ACP98088 5654 aa7.07□□□□□ -1.28
PNKP-216ENST00000601816 MUC5BQ9HC84 5762 aaPredicted RBP7.06□□□□□ -1.28
PNKP-216ENST00000601816 KRTAP9-9Q9BYP9 154 aa7.04□□□□□ -1.28
PNKP-216ENST00000601816 BRK1Q8WUW1 75 aa7.02□□□□□ -1.29
PNKP-216ENST00000601816 KRTAP5-1Q6L8H4 278 aa6.95□□□□□ -1.3
PNKP-216ENST00000601816 SVIPQ8NHG7 77 aa6.81□□□□□ -1.32
PNKP-216ENST00000601816 LCE1EQ5T753 118 aa6.65□□□□□ -1.34
PNKP-216ENST00000601816 PRO0628Q9UI54 55 aa6.63□□□□□ -1.35
PNKP-216ENST00000601816 PMAIP1Q13794 54 aa6.58□□□□□ -1.36
PNKP-216ENST00000601816 PRAC1Q96KF2 57 aa6.38□□□□□ -1.39
PNKP-216ENST00000601816 LCE1BQ5T7P3 118 aa6.28□□□□□ -1.4
PNKP-216ENST00000601816 KRTAP4-2Q9BYR5 136 aa6.28□□□□□ -1.4
PNKP-216ENST00000601816 LCE1CQ5T751 118 aa6.16□□□□□ -1.42
PNKP-216ENST00000601816 KTN1-AS1Q86SY8 53 aa6.12□□□□□ -1.43
PNKP-216ENST00000601816 LCE3DQ9BYE3 92 aa5.91□□□□□ -1.46
PNKP-216ENST00000601816 KRTAP4-12Q9BQ66 201 aa5.72□□□□□ -1.49
PNKP-216ENST00000601816 KRTAP5-11Q6L8G4 156 aa5.6□□□□□ -1.51
PNKP-216ENST00000601816 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.6□□□□□ -1.51
PNKP-216ENST00000601816 LCE3EQ5T5B0 92 aa5.55□□□□□ -1.52
PNKP-216ENST00000601816 LUZP6Q538Z0 58 aa5.45□□□□□ -1.54
PNKP-216ENST00000601816 LCE1FQ5T754 118 aa5.45□□□□□ -1.54
PNKP-216ENST00000601816 KRTAP21-2Q3LI59 83 aa5.15□□□□□ -1.59
PNKP-216ENST00000601816 PHGR1C9JFL3 82 aa4.93□□□□□ -1.62
PNKP-216ENST00000601816 H3BS24 57 aa4.79□□□□□ -1.64
PNKP-216ENST00000601816 NDUFAF8A1L188 74 aa4.76□□□□□ -1.65
PNKP-216ENST00000601816 KRTAP4-4Q9BYR3 166 aa4.75□□□□□ -1.65
PNKP-216ENST00000601816 A0A0A0MQY5 61 aa4.54□□□□□ -1.68
PNKP-216ENST00000601816 MUC19Q7Z5P9 8384 aa4.49□□□□□ -1.69
PNKP-216ENST00000601816 PRM1P04553 51 aa4.13□□□□□ -1.75
PNKP-216ENST00000601816 INE1O15225 51 aa3.97□□□□□ -1.77
PNKP-216ENST00000601816 KRTAP21-1Q3LI58 79 aa3.75□□□□□ -1.81
PNKP-216ENST00000601816 MUC16Q8WXI7 14507 aa3.24□□□□□ -1.89
Retrieved 78 of 20,778 RNA–protein pairs in 72.5 ms