RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 MT1MQ8N339 61 aa7.53□□□□□ -1.2
VPS53-216ENST00000574029 V9GYY9 64 aa7.53□□□□□ -1.2
VPS53-216ENST00000574029 KRTAP5-10Q6L8G5 202 aa7.52□□□□□ -1.21
VPS53-216ENST00000574029 Q1T7F1 81 aa7.5□□□□□ -1.21
VPS53-216ENST00000574029 MT1LQ93083 61 aa7.47□□□□□ -1.21
VPS53-216ENST00000574029 H3BS24 57 aa7.45□□□□□ -1.22
VPS53-216ENST00000574029 PCP4P48539 62 aa7.44□□□□□ -1.22
VPS53-216ENST00000574029 C10orf95Q9H7T3 257 aa7.44□□□□□ -1.22
VPS53-216ENST00000574029 MIR22HGQ0VDD5 57 aa7.42□□□□□ -1.22
VPS53-216ENST00000574029 KRTAP5-4Q6L8H1 288 aa7.42□□□□□ -1.22
VPS53-216ENST00000574029 PSPHP1O15172 72 aa7.4□□□□□ -1.22
VPS53-216ENST00000574029 RPS28P62857 69 aaKnown RBP7.37□□□□□ -1.23
VPS53-216ENST00000574029 KRTAP5-7Q6L8G8 165 aa7.36□□□□□ -1.23
VPS53-216ENST00000574029 KRTAP4-3Q9BYR4 195 aa7.36□□□□□ -1.23
VPS53-216ENST00000574029 TNP1P09430 55 aa7.35□□□□□ -1.23
VPS53-216ENST00000574029 KRTAP4-6Q9BYQ5 205 aa7.33□□□□□ -1.24
VPS53-216ENST00000574029 LCE3AQ5TA76 89 aa7.26□□□□□ -1.25
VPS53-216ENST00000574029 K7ERS5 55 aa7.22□□□□□ -1.25
VPS53-216ENST00000574029 A6NED7 52 aa7.16□□□□□ -1.26
VPS53-216ENST00000574029 SPRR5A0A1B0GTR4 108 aa7.14□□□□□ -1.27
VPS53-216ENST00000574029 KRTAP5-3Q6L8H2 238 aa7.13□□□□□ -1.27
VPS53-216ENST00000574029 KRTAP25-1Q3LHN0 102 aa7.08□□□□□ -1.28
VPS53-216ENST00000574029 KRTAP4-7Q9BYR0 210 aa7.08□□□□□ -1.28
VPS53-216ENST00000574029 KRTAP20-2Q3LI61 65 aa7.01□□□□□ -1.29
VPS53-216ENST00000574029 KRTAP12-3P60328 96 aa6.98□□□□□ -1.29
VPS53-216ENST00000574029 KRTAP5-5Q701N2 237 aaPredicted RBP6.97□□□□□ -1.29
VPS53-216ENST00000574029 CDC42SE1Q9NRR8 79 aa6.92□□□□□ -1.3
VPS53-216ENST00000574029 KRTAP23-1A1A580 65 aa6.89□□□□□ -1.31
VPS53-216ENST00000574029 LOC100996750A0A140TA64 210 aa6.88□□□□□ -1.31
VPS53-216ENST00000574029 KRTAP12-4P60329 112 aa6.84□□□□□ -1.31
VPS53-216ENST00000574029 ROMO1P60602 79 aa6.79□□□□□ -1.32
VPS53-216ENST00000574029 KRTAP19-4Q3LI73 84 aa6.68□□□□□ -1.34
VPS53-216ENST00000574029 SYNE1Q8NF91 8797 aaKnown RBP6.67□□□□□ -1.34
VPS53-216ENST00000574029 AHNAKQ09666 5890 aaKnown RBP6.65□□□□□ -1.34
VPS53-216ENST00000574029 KRTAP15-1Q3LI76 137 aa6.61□□□□□ -1.35
VPS53-216ENST00000574029 MUC5ACP98088 5654 aa6.5□□□□□ -1.37
VPS53-216ENST00000574029 KRTAP4-11Q9BYQ6 195 aa6.49□□□□□ -1.37
VPS53-216ENST00000574029 LCE3CQ5T5A8 94 aa6.45□□□□□ -1.38
VPS53-216ENST00000574029 MUC5BQ9HC84 5762 aaPredicted RBP6.44□□□□□ -1.38
VPS53-216ENST00000574029 KRTAP5-2Q701N4 177 aa6.43□□□□□ -1.38
VPS53-216ENST00000574029 KRTAP4-12Q9BQ66 201 aa6.41□□□□□ -1.38
VPS53-216ENST00000574029 BRK1Q8WUW1 75 aa6.4□□□□□ -1.38
VPS53-216ENST00000574029 MT1AP04731 61 aa6.35□□□□□ -1.39
VPS53-216ENST00000574029 KRTAP6-1Q3LI64 71 aa6.33□□□□□ -1.4
VPS53-216ENST00000574029 KRTAP5-8O75690 187 aa6.29□□□□□ -1.4
VPS53-216ENST00000574029 KRTAP9-4Q9BYQ2 154 aa6.18□□□□□ -1.42
VPS53-216ENST00000574029 KRTAP6-2Q3LI66 62 aa6.12□□□□□ -1.43
VPS53-216ENST00000574029 KRTAP9-6A8MVA2 160 aa6.07□□□□□ -1.44
VPS53-216ENST00000574029 PMAIP1Q13794 54 aa6.06□□□□□ -1.44
VPS53-216ENST00000574029 KRTAP9-9Q9BYP9 154 aa6.05□□□□□ -1.44
VPS53-216ENST00000574029 SVIPQ8NHG7 77 aa6.02□□□□□ -1.45
VPS53-216ENST00000574029 OBSCNQ5VST9 7968 aa5.96□□□□□ -1.45
VPS53-216ENST00000574029 KRTAP5-1Q6L8H4 278 aa5.84□□□□□ -1.47
VPS53-216ENST00000574029 PRO0628Q9UI54 55 aa5.83□□□□□ -1.48
VPS53-216ENST00000574029 MT3P25713 68 aa5.82□□□□□ -1.48
VPS53-216ENST00000574029 PRAC1Q96KF2 57 aa5.75□□□□□ -1.49
VPS53-216ENST00000574029 KTN1-AS1Q86SY8 53 aa5.5□□□□□ -1.53
VPS53-216ENST00000574029 LCE1EQ5T753 118 aa5.45□□□□□ -1.54
VPS53-216ENST00000574029 KRTAP4-2Q9BYR5 136 aa5.38□□□□□ -1.55
VPS53-216ENST00000574029 A0A0A0MQY5 61 aa5.26□□□□□ -1.57
VPS53-216ENST00000574029 LCE1BQ5T7P3 118 aa5.13□□□□□ -1.59
VPS53-216ENST00000574029 LCE1CQ5T751 118 aa5.06□□□□□ -1.6
VPS53-216ENST00000574029 LUZP6Q538Z0 58 aa4.84□□□□□ -1.63
VPS53-216ENST00000574029 LCE3DQ9BYE3 92 aa4.7□□□□□ -1.66
VPS53-216ENST00000574029 KRTAP5-11Q6L8G4 156 aa4.62□□□□□ -1.67
VPS53-216ENST00000574029 LCE1FQ5T754 118 aa4.58□□□□□ -1.68
VPS53-216ENST00000574029 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.57□□□□□ -1.68
VPS53-216ENST00000574029 LCE3EQ5T5B0 92 aa4.46□□□□□ -1.7
VPS53-216ENST00000574029 PHGR1C9JFL3 82 aa4.43□□□□□ -1.7
VPS53-216ENST00000574029 KRTAP21-2Q3LI59 83 aa4.19□□□□□ -1.74
VPS53-216ENST00000574029 NDUFAF8A1L188 74 aa4.12□□□□□ -1.75
VPS53-216ENST00000574029 KRTAP4-4Q9BYR3 166 aa3.87□□□□□ -1.79
VPS53-216ENST00000574029 MUC19Q7Z5P9 8384 aa3.7□□□□□ -1.82
VPS53-216ENST00000574029 PRM1P04553 51 aa3.46□□□□□ -1.86
VPS53-216ENST00000574029 KRTAP21-1Q3LI58 79 aa3.38□□□□□ -1.87
VPS53-216ENST00000574029 INE1O15225 51 aa3.36□□□□□ -1.87
VPS53-216ENST00000574029 MUC16Q8WXI7 14507 aa2.66□□□□□ -1.98
Retrieved 77 of 20,778 RNA–protein pairs in 167.4 ms