RNA–Protein interactions for RNA: ENST00000573519.5

NPLOC4-213, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 1 (best)

Gene NPLOC4, Length 654 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-213ENST00000573519 MT1MQ8N339 61 aa4.51□□□□□ -1.69
NPLOC4-213ENST00000573519 MT1LQ93083 61 aa4.51□□□□□ -1.69
NPLOC4-213ENST00000573519 PSPHP1O15172 72 aa4.49□□□□□ -1.69
NPLOC4-213ENST00000573519 Q1T7F1 81 aa4.44□□□□□ -1.7
NPLOC4-213ENST00000573519 V9GYY9 64 aa4.44□□□□□ -1.7
NPLOC4-213ENST00000573519 KRTAP4-3Q9BYR4 195 aa4.43□□□□□ -1.7
NPLOC4-213ENST00000573519 LCE1DQ5T752 114 aa4.42□□□□□ -1.7
NPLOC4-213ENST00000573519 MT4P47944 62 aa4.4□□□□□ -1.71
NPLOC4-213ENST00000573519 LCE4AQ5TA78 99 aa4.39□□□□□ -1.71
NPLOC4-213ENST00000573519 K7ERS5 55 aa4.38□□□□□ -1.71
NPLOC4-213ENST00000573519 KRTAP12-3P60328 96 aa4.37□□□□□ -1.71
NPLOC4-213ENST00000573519 KRTAP25-1Q3LHN0 102 aa4.34□□□□□ -1.71
NPLOC4-213ENST00000573519 A6NED7 52 aa4.32□□□□□ -1.72
NPLOC4-213ENST00000573519 KRTAP4-7Q9BYR0 210 aa4.31□□□□□ -1.72
NPLOC4-213ENST00000573519 HMCN1Q96RW7 5635 aa4.31□□□□□ -1.72
NPLOC4-213ENST00000573519 PCP4P48539 62 aa4.28□□□□□ -1.72
NPLOC4-213ENST00000573519 KRTAP5-4Q6L8H1 288 aa4.28□□□□□ -1.72
NPLOC4-213ENST00000573519 RPS28P62857 69 aaKnown RBP4.24□□□□□ -1.73
NPLOC4-213ENST00000573519 KRTAP4-6Q9BYQ5 205 aa4.23□□□□□ -1.73
NPLOC4-213ENST00000573519 CDC42SE1Q9NRR8 79 aa4.16□□□□□ -1.74
NPLOC4-213ENST00000573519 KRTAP23-1A1A580 65 aa4.15□□□□□ -1.75
NPLOC4-213ENST00000573519 AHNAK2Q8IVF2 5795 aa4.13□□□□□ -1.75
NPLOC4-213ENST00000573519 ROMO1P60602 79 aa4.12□□□□□ -1.75
NPLOC4-213ENST00000573519 KRTAP15-1Q3LI76 137 aa4.11□□□□□ -1.75
NPLOC4-213ENST00000573519 KRTAP5-5Q701N2 237 aaPredicted RBP4.1□□□□□ -1.75
NPLOC4-213ENST00000573519 LOC100996750A0A140TA64 210 aa4.09□□□□□ -1.75
NPLOC4-213ENST00000573519 KRTAP5-10Q6L8G5 202 aa4.09□□□□□ -1.75
NPLOC4-213ENST00000573519 KRTAP20-2Q3LI61 65 aa4.07□□□□□ -1.76
NPLOC4-213ENST00000573519 KRTAP19-4Q3LI73 84 aa4.06□□□□□ -1.76
NPLOC4-213ENST00000573519 KRTAP12-4P60329 112 aa4.05□□□□□ -1.76
NPLOC4-213ENST00000573519 SPRR5A0A1B0GTR4 108 aa4.03□□□□□ -1.76
NPLOC4-213ENST00000573519 LCE3CQ5T5A8 94 aa4.03□□□□□ -1.76
NPLOC4-213ENST00000573519 KRTAP5-3Q6L8H2 238 aa4.01□□□□□ -1.77
NPLOC4-213ENST00000573519 SYNE1Q8NF91 8797 aaKnown RBP3.99□□□□□ -1.77
NPLOC4-213ENST00000573519 KRTAP5-7Q6L8G8 165 aa3.93□□□□□ -1.78
NPLOC4-213ENST00000573519 MT1AP04731 61 aa3.84□□□□□ -1.79
NPLOC4-213ENST00000573519 KRTAP9-6A8MVA2 160 aa3.83□□□□□ -1.8
NPLOC4-213ENST00000573519 KRTAP6-1Q3LI64 71 aa3.83□□□□□ -1.8
NPLOC4-213ENST00000573519 BRK1Q8WUW1 75 aa3.77□□□□□ -1.81
NPLOC4-213ENST00000573519 KRTAP5-2Q701N4 177 aa3.74□□□□□ -1.81
NPLOC4-213ENST00000573519 KRTAP9-4Q9BYQ2 154 aa3.72□□□□□ -1.81
NPLOC4-213ENST00000573519 KRTAP4-11Q9BYQ6 195 aa3.72□□□□□ -1.81
NPLOC4-213ENST00000573519 KRTAP6-2Q3LI66 62 aa3.67□□□□□ -1.82
NPLOC4-213ENST00000573519 OBSCNQ5VST9 7968 aa3.61□□□□□ -1.83
NPLOC4-213ENST00000573519 SVIPQ8NHG7 77 aa3.6□□□□□ -1.83
NPLOC4-213ENST00000573519 KRTAP5-8O75690 187 aa3.59□□□□□ -1.83
NPLOC4-213ENST00000573519 AHNAKQ09666 5890 aaKnown RBP3.58□□□□□ -1.84
NPLOC4-213ENST00000573519 PMAIP1Q13794 54 aa3.54□□□□□ -1.84
NPLOC4-213ENST00000573519 MT3P25713 68 aa3.52□□□□□ -1.85
NPLOC4-213ENST00000573519 PRAC1Q96KF2 57 aa3.46□□□□□ -1.86
NPLOC4-213ENST00000573519 MUC5BQ9HC84 5762 aaPredicted RBP3.44□□□□□ -1.86
NPLOC4-213ENST00000573519 KRTAP9-9Q9BYP9 154 aa3.43□□□□□ -1.86
NPLOC4-213ENST00000573519 MUC5ACP98088 5654 aa3.42□□□□□ -1.86
NPLOC4-213ENST00000573519 KRTAP5-1Q6L8H4 278 aa3.37□□□□□ -1.87
NPLOC4-213ENST00000573519 PRO0628Q9UI54 55 aa3.31□□□□□ -1.88
NPLOC4-213ENST00000573519 LCE1EQ5T753 118 aa3.21□□□□□ -1.9
NPLOC4-213ENST00000573519 KTN1-AS1Q86SY8 53 aa3.14□□□□□ -1.91
NPLOC4-213ENST00000573519 KRTAP4-12Q9BQ66 201 aa3.13□□□□□ -1.91
NPLOC4-213ENST00000573519 LCE1BQ5T7P3 118 aa3.09□□□□□ -1.91
NPLOC4-213ENST00000573519 KRTAP4-2Q9BYR5 136 aa3.04□□□□□ -1.92
NPLOC4-213ENST00000573519 LCE1CQ5T751 118 aa2.98□□□□□ -1.93
NPLOC4-213ENST00000573519 H3BS24 57 aa2.97□□□□□ -1.93
NPLOC4-213ENST00000573519 LCE3DQ9BYE3 92 aa2.91□□□□□ -1.94
NPLOC4-213ENST00000573519 LUZP6Q538Z0 58 aa2.84□□□□□ -1.95
NPLOC4-213ENST00000573519 LCE3EQ5T5B0 92 aa2.75□□□□□ -1.97
NPLOC4-213ENST00000573519 KRTAP5-11Q6L8G4 156 aa2.7□□□□□ -1.98
NPLOC4-213ENST00000573519 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.69□□□□□ -1.98
NPLOC4-213ENST00000573519 LCE1FQ5T754 118 aa2.63□□□□□ -1.99
NPLOC4-213ENST00000573519 KRTAP21-2Q3LI59 83 aa2.5□□□□□ -2.01
NPLOC4-213ENST00000573519 PHGR1C9JFL3 82 aa2.42□□□□□ -2.02
NPLOC4-213ENST00000573519 NDUFAF8A1L188 74 aa2.38□□□□□ -2.03
NPLOC4-213ENST00000573519 KRTAP4-4Q9BYR3 166 aa2.35□□□□□ -2.03
NPLOC4-213ENST00000573519 MUC19Q7Z5P9 8384 aa2.21□□□□□ -2.06
NPLOC4-213ENST00000573519 A0A0A0MQY5 61 aa2.19□□□□□ -2.06
NPLOC4-213ENST00000573519 PRM1P04553 51 aa2.13□□□□□ -2.07
NPLOC4-213ENST00000573519 INE1O15225 51 aa2.03□□□□□ -2.08
NPLOC4-213ENST00000573519 KRTAP21-1Q3LI58 79 aa1.82□□□□□ -2.12
NPLOC4-213ENST00000573519 MUC16Q8WXI7 14507 aa1.56□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 6 ms