RNA–Protein interactions for RNA: ENST00000571409.1

CTDNEP1-206, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 5

Gene CTDNEP1, Length 741 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-206ENST00000571409 LCE1DQ5T752 114 aa10.54□□□□□ -0.72
CTDNEP1-206ENST00000571409 KRTAP4-3Q9BYR4 195 aa10.53□□□□□ -0.72
CTDNEP1-206ENST00000571409 LCE4AQ5TA78 99 aa10.51□□□□□ -0.73
CTDNEP1-206ENST00000571409 MT4P47944 62 aa10.42□□□□□ -0.74
CTDNEP1-206ENST00000571409 KRTAP12-3P60328 96 aa10.4□□□□□ -0.74
CTDNEP1-206ENST00000571409 GPR98Q8WXG9 6306 aa10.38□□□□□ -0.75
CTDNEP1-206ENST00000571409 MIR22HGQ0VDD5 57 aa10.3□□□□□ -0.76
CTDNEP1-206ENST00000571409 KRTAP5-4Q6L8H1 288 aa10.29□□□□□ -0.76
CTDNEP1-206ENST00000571409 HMCN1Q96RW7 5635 aa10.29□□□□□ -0.76
CTDNEP1-206ENST00000571409 KRTAP4-7Q9BYR0 210 aa10.28□□□□□ -0.76
CTDNEP1-206ENST00000571409 KRTAP25-1Q3LHN0 102 aa10.19□□□□□ -0.78
CTDNEP1-206ENST00000571409 K7ERS5 55 aa10.13□□□□□ -0.79
CTDNEP1-206ENST00000571409 KRTAP4-6Q9BYQ5 205 aa10.11□□□□□ -0.79
CTDNEP1-206ENST00000571409 PSPHP1O15172 72 aa10.07□□□□□ -0.8
CTDNEP1-206ENST00000571409 V9GYY9 64 aa10.06□□□□□ -0.8
CTDNEP1-206ENST00000571409 Q1T7F1 81 aa9.98□□□□□ -0.81
CTDNEP1-206ENST00000571409 AHNAK2Q8IVF2 5795 aa9.92□□□□□ -0.82
CTDNEP1-206ENST00000571409 KRTAP5-5Q701N2 237 aaPredicted RBP9.88□□□□□ -0.83
CTDNEP1-206ENST00000571409 KRTAP5-10Q6L8G5 202 aa9.81□□□□□ -0.84
CTDNEP1-206ENST00000571409 KRTAP23-1A1A580 65 aa9.78□□□□□ -0.84
CTDNEP1-206ENST00000571409 KRTAP19-4Q3LI73 84 aa9.77□□□□□ -0.85
CTDNEP1-206ENST00000571409 LOC100996750A0A140TA64 210 aa9.74□□□□□ -0.85
CTDNEP1-206ENST00000571409 KRTAP20-2Q3LI61 65 aa9.73□□□□□ -0.85
CTDNEP1-206ENST00000571409 A6NED7 52 aa9.72□□□□□ -0.85
CTDNEP1-206ENST00000571409 KRTAP15-1Q3LI76 137 aa9.69□□□□□ -0.86
CTDNEP1-206ENST00000571409 SPRR5A0A1B0GTR4 108 aa9.66□□□□□ -0.86
CTDNEP1-206ENST00000571409 KRTAP12-4P60329 112 aa9.64□□□□□ -0.87
CTDNEP1-206ENST00000571409 KRTAP5-3Q6L8H2 238 aa9.58□□□□□ -0.88
CTDNEP1-206ENST00000571409 CDC42SE1Q9NRR8 79 aa9.58□□□□□ -0.88
CTDNEP1-206ENST00000571409 LCE3CQ5T5A8 94 aa9.57□□□□□ -0.88
CTDNEP1-206ENST00000571409 SYNE1Q8NF91 8797 aaKnown RBP9.44□□□□□ -0.9
CTDNEP1-206ENST00000571409 KRTAP5-7Q6L8G8 165 aa9.43□□□□□ -0.9
CTDNEP1-206ENST00000571409 ROMO1P60602 79 aa9.42□□□□□ -0.9
CTDNEP1-206ENST00000571409 RPS28P62857 69 aaKnown RBP9.33□□□□□ -0.92
CTDNEP1-206ENST00000571409 MT1AP04731 61 aa9.18□□□□□ -0.94
CTDNEP1-206ENST00000571409 KRTAP6-1Q3LI64 71 aa9.14□□□□□ -0.95
CTDNEP1-206ENST00000571409 PCP4P48539 62 aa9.08□□□□□ -0.96
CTDNEP1-206ENST00000571409 KRTAP9-6A8MVA2 160 aa9.04□□□□□ -0.96
CTDNEP1-206ENST00000571409 KRTAP5-2Q701N4 177 aa9.01□□□□□ -0.97
CTDNEP1-206ENST00000571409 KRTAP4-11Q9BYQ6 195 aa8.89□□□□□ -0.99
CTDNEP1-206ENST00000571409 KRTAP9-4Q9BYQ2 154 aa8.88□□□□□ -0.99
CTDNEP1-206ENST00000571409 KRTAP6-2Q3LI66 62 aa8.75□□□□□ -1.01
CTDNEP1-206ENST00000571409 KRTAP5-8O75690 187 aa8.6□□□□□ -1.03
CTDNEP1-206ENST00000571409 MT3P25713 68 aa8.41□□□□□ -1.06
CTDNEP1-206ENST00000571409 OBSCNQ5VST9 7968 aa8.38□□□□□ -1.07
CTDNEP1-206ENST00000571409 BRK1Q8WUW1 75 aa8.2□□□□□ -1.1
CTDNEP1-206ENST00000571409 KRTAP9-9Q9BYP9 154 aa8.17□□□□□ -1.1
CTDNEP1-206ENST00000571409 MUC5BQ9HC84 5762 aaPredicted RBP8.17□□□□□ -1.1
CTDNEP1-206ENST00000571409 MUC5ACP98088 5654 aa8.14□□□□□ -1.11
CTDNEP1-206ENST00000571409 AHNAKQ09666 5890 aaKnown RBP8.11□□□□□ -1.11
CTDNEP1-206ENST00000571409 KRTAP5-1Q6L8H4 278 aa8.1□□□□□ -1.11
CTDNEP1-206ENST00000571409 LCE1EQ5T753 118 aa7.71□□□□□ -1.18
CTDNEP1-206ENST00000571409 PMAIP1Q13794 54 aa7.68□□□□□ -1.18
CTDNEP1-206ENST00000571409 PRAC1Q96KF2 57 aa7.47□□□□□ -1.21
CTDNEP1-206ENST00000571409 KRTAP4-2Q9BYR5 136 aa7.32□□□□□ -1.24
CTDNEP1-206ENST00000571409 LCE1BQ5T7P3 118 aa7.3□□□□□ -1.24
CTDNEP1-206ENST00000571409 LCE1CQ5T751 118 aa7.17□□□□□ -1.26
CTDNEP1-206ENST00000571409 PRO0628Q9UI54 55 aa6.98□□□□□ -1.29
CTDNEP1-206ENST00000571409 LCE3DQ9BYE3 92 aa6.88□□□□□ -1.31
CTDNEP1-206ENST00000571409 KTN1-AS1Q86SY8 53 aa6.7□□□□□ -1.34
CTDNEP1-206ENST00000571409 KRTAP4-12Q9BQ66 201 aa6.66□□□□□ -1.34
CTDNEP1-206ENST00000571409 KRTAP5-6Q6L8G9 129 aaPredicted RBP6.51□□□□□ -1.37
CTDNEP1-206ENST00000571409 KRTAP5-11Q6L8G4 156 aa6.5□□□□□ -1.37
CTDNEP1-206ENST00000571409 SVIPQ8NHG7 77 aa6.5□□□□□ -1.37
CTDNEP1-206ENST00000571409 LCE3EQ5T5B0 92 aa6.46□□□□□ -1.38
CTDNEP1-206ENST00000571409 LUZP6Q538Z0 58 aa6.32□□□□□ -1.4
CTDNEP1-206ENST00000571409 LCE1FQ5T754 118 aa6.32□□□□□ -1.4
CTDNEP1-206ENST00000571409 KRTAP21-2Q3LI59 83 aa6.02□□□□□ -1.45
CTDNEP1-206ENST00000571409 PHGR1C9JFL3 82 aa5.73□□□□□ -1.49
CTDNEP1-206ENST00000571409 KRTAP4-4Q9BYR3 166 aa5.54□□□□□ -1.52
CTDNEP1-206ENST00000571409 MUC19Q7Z5P9 8384 aa5.16□□□□□ -1.58
CTDNEP1-206ENST00000571409 NDUFAF8A1L188 74 aa4.89□□□□□ -1.63
CTDNEP1-206ENST00000571409 PRM1P04553 51 aa4.82□□□□□ -1.64
CTDNEP1-206ENST00000571409 KRTAP21-1Q3LI58 79 aa4.34□□□□□ -1.71
CTDNEP1-206ENST00000571409 A0A0A0MQY5 61 aa4.19□□□□□ -1.74
CTDNEP1-206ENST00000571409 INE1O15225 51 aa4.12□□□□□ -1.75
CTDNEP1-206ENST00000571409 H3BS24 57 aa4.03□□□□□ -1.76
CTDNEP1-206ENST00000571409 MUC16Q8WXI7 14507 aa3.7□□□□□ -1.82
Retrieved 78 of 20,778 RNA–protein pairs in 12.4 ms