RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 MIR22HGQ0VDD5 57 aa7.03□□□□□ -1.28
CLK3-225ENST00000569063 KRTAP4-3Q9BYR4 195 aa7.01□□□□□ -1.29
CLK3-225ENST00000569063 KRTAP12-3P60328 96 aa7□□□□□ -1.29
CLK3-225ENST00000569063 LCE4AQ5TA78 99 aa6.98□□□□□ -1.29
CLK3-225ENST00000569063 LCE1DQ5T752 114 aa6.96□□□□□ -1.3
CLK3-225ENST00000569063 V9GYY9 64 aa6.94□□□□□ -1.3
CLK3-225ENST00000569063 KRTAP25-1Q3LHN0 102 aa6.92□□□□□ -1.3
CLK3-225ENST00000569063 K7ERS5 55 aa6.9□□□□□ -1.3
CLK3-225ENST00000569063 Q1T7F1 81 aa6.9□□□□□ -1.3
CLK3-225ENST00000569063 PSPHP1O15172 72 aa6.88□□□□□ -1.31
CLK3-225ENST00000569063 MT4P47944 62 aa6.87□□□□□ -1.31
CLK3-225ENST00000569063 KRTAP5-4Q6L8H1 288 aa6.87□□□□□ -1.31
CLK3-225ENST00000569063 KRTAP4-7Q9BYR0 210 aa6.86□□□□□ -1.31
CLK3-225ENST00000569063 GPR98Q8WXG9 6306 aa6.79□□□□□ -1.32
CLK3-225ENST00000569063 HMCN1Q96RW7 5635 aa6.77□□□□□ -1.33
CLK3-225ENST00000569063 KRTAP23-1A1A580 65 aa6.7□□□□□ -1.34
CLK3-225ENST00000569063 KRTAP4-6Q9BYQ5 205 aa6.7□□□□□ -1.34
CLK3-225ENST00000569063 KRTAP19-4Q3LI73 84 aa6.66□□□□□ -1.34
CLK3-225ENST00000569063 A6NED7 52 aa6.65□□□□□ -1.34
CLK3-225ENST00000569063 KRTAP5-5Q701N2 237 aaPredicted RBP6.62□□□□□ -1.35
CLK3-225ENST00000569063 KRTAP15-1Q3LI76 137 aa6.55□□□□□ -1.36
CLK3-225ENST00000569063 RPS28P62857 69 aaKnown RBP6.54□□□□□ -1.36
CLK3-225ENST00000569063 CDC42SE1Q9NRR8 79 aa6.53□□□□□ -1.36
CLK3-225ENST00000569063 LOC100996750A0A140TA64 210 aa6.5□□□□□ -1.37
CLK3-225ENST00000569063 AHNAK2Q8IVF2 5795 aa6.48□□□□□ -1.37
CLK3-225ENST00000569063 KRTAP20-2Q3LI61 65 aa6.47□□□□□ -1.37
CLK3-225ENST00000569063 KRTAP5-10Q6L8G5 202 aa6.47□□□□□ -1.37
CLK3-225ENST00000569063 SPRR5A0A1B0GTR4 108 aa6.46□□□□□ -1.38
CLK3-225ENST00000569063 LCE3CQ5T5A8 94 aa6.46□□□□□ -1.38
CLK3-225ENST00000569063 ROMO1P60602 79 aa6.43□□□□□ -1.38
CLK3-225ENST00000569063 KRTAP12-4P60329 112 aa6.42□□□□□ -1.38
CLK3-225ENST00000569063 PCP4P48539 62 aa6.37□□□□□ -1.39
CLK3-225ENST00000569063 KRTAP5-3Q6L8H2 238 aa6.32□□□□□ -1.4
CLK3-225ENST00000569063 KRTAP5-7Q6L8G8 165 aa6.22□□□□□ -1.41
CLK3-225ENST00000569063 SYNE1Q8NF91 8797 aaKnown RBP6.22□□□□□ -1.41
CLK3-225ENST00000569063 MT1AP04731 61 aa6.15□□□□□ -1.42
CLK3-225ENST00000569063 KRTAP6-1Q3LI64 71 aa6.11□□□□□ -1.43
CLK3-225ENST00000569063 KRTAP9-6A8MVA2 160 aa6.09□□□□□ -1.43
CLK3-225ENST00000569063 KRTAP5-2Q701N4 177 aa6.03□□□□□ -1.44
CLK3-225ENST00000569063 KRTAP9-4Q9BYQ2 154 aa5.96□□□□□ -1.46
CLK3-225ENST00000569063 KRTAP4-11Q9BYQ6 195 aa5.9□□□□□ -1.46
CLK3-225ENST00000569063 KRTAP6-2Q3LI66 62 aa5.83□□□□□ -1.48
CLK3-225ENST00000569063 KRTAP5-8O75690 187 aa5.71□□□□□ -1.5
CLK3-225ENST00000569063 BRK1Q8WUW1 75 aa5.68□□□□□ -1.5
CLK3-225ENST00000569063 MT3P25713 68 aa5.63□□□□□ -1.51
CLK3-225ENST00000569063 OBSCNQ5VST9 7968 aa5.57□□□□□ -1.52
CLK3-225ENST00000569063 H3BS24 57 aa5.49□□□□□ -1.53
CLK3-225ENST00000569063 KRTAP9-9Q9BYP9 154 aa5.4□□□□□ -1.54
CLK3-225ENST00000569063 KRTAP5-1Q6L8H4 278 aa5.39□□□□□ -1.55
CLK3-225ENST00000569063 PMAIP1Q13794 54 aa5.35□□□□□ -1.55
CLK3-225ENST00000569063 MUC5ACP98088 5654 aa5.33□□□□□ -1.56
CLK3-225ENST00000569063 MUC5BQ9HC84 5762 aaPredicted RBP5.3□□□□□ -1.56
CLK3-225ENST00000569063 AHNAKQ09666 5890 aaKnown RBP5.26□□□□□ -1.57
CLK3-225ENST00000569063 LCE1EQ5T753 118 aa5.19□□□□□ -1.58
CLK3-225ENST00000569063 PRAC1Q96KF2 57 aa5.15□□□□□ -1.59
CLK3-225ENST00000569063 KRTAP4-12Q9BQ66 201 aa5.04□□□□□ -1.6
CLK3-225ENST00000569063 SVIPQ8NHG7 77 aa4.92□□□□□ -1.62
CLK3-225ENST00000569063 PRO0628Q9UI54 55 aa4.91□□□□□ -1.62
CLK3-225ENST00000569063 KRTAP4-2Q9BYR5 136 aa4.88□□□□□ -1.63
CLK3-225ENST00000569063 LCE1BQ5T7P3 118 aa4.84□□□□□ -1.63
CLK3-225ENST00000569063 LCE1CQ5T751 118 aa4.81□□□□□ -1.64
CLK3-225ENST00000569063 KTN1-AS1Q86SY8 53 aa4.71□□□□□ -1.66
CLK3-225ENST00000569063 LCE3DQ9BYE3 92 aa4.65□□□□□ -1.67
CLK3-225ENST00000569063 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.39□□□□□ -1.71
CLK3-225ENST00000569063 LUZP6Q538Z0 58 aa4.38□□□□□ -1.71
CLK3-225ENST00000569063 LCE3EQ5T5B0 92 aa4.38□□□□□ -1.71
CLK3-225ENST00000569063 KRTAP5-11Q6L8G4 156 aa4.35□□□□□ -1.71
CLK3-225ENST00000569063 LCE1FQ5T754 118 aa4.24□□□□□ -1.73
CLK3-225ENST00000569063 KRTAP21-2Q3LI59 83 aa4.04□□□□□ -1.76
CLK3-225ENST00000569063 A0A0A0MQY5 61 aa3.85□□□□□ -1.79
CLK3-225ENST00000569063 PHGR1C9JFL3 82 aa3.76□□□□□ -1.81
CLK3-225ENST00000569063 KRTAP4-4Q9BYR3 166 aa3.66□□□□□ -1.82
CLK3-225ENST00000569063 NDUFAF8A1L188 74 aa3.42□□□□□ -1.86
CLK3-225ENST00000569063 MUC19Q7Z5P9 8384 aa3.39□□□□□ -1.87
CLK3-225ENST00000569063 PRM1P04553 51 aa3.28□□□□□ -1.88
CLK3-225ENST00000569063 KRTAP21-1Q3LI58 79 aa2.85□□□□□ -1.95
CLK3-225ENST00000569063 INE1O15225 51 aa2.76□□□□□ -1.97
CLK3-225ENST00000569063 MUC16Q8WXI7 14507 aa2.44□□□□□ -2.02
Retrieved 78 of 20,778 RNA–protein pairs in 65.9 ms