RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 SPRR5A0A1B0GTR4 108 aa1.26□□□□□ -2.21
SLIRP-208ENST00000556956 LCE3DQ9BYE3 92 aa1.26□□□□□ -2.21
SLIRP-208ENST00000556956 BIRC6Q9NR09 4857 aa1.25□□□□□ -2.21
SLIRP-208ENST00000556956 INE1O15225 51 aa1.25□□□□□ -2.21
SLIRP-208ENST00000556956 PRO2289Q9P1D8 64 aa1.25□□□□□ -2.21
SLIRP-208ENST00000556956 CRCT1Q9UGL9 99 aa1.24□□□□□ -2.21
SLIRP-208ENST00000556956 DMBT1Q9UGM3 2413 aaPredicted RBP1.23□□□□□ -2.21
SLIRP-208ENST00000556956 HERC2O95714 4834 aa1.23□□□□□ -2.21
SLIRP-208ENST00000556956 ABCA13Q86UQ4 5058 aa1.22□□□□□ -2.21
SLIRP-208ENST00000556956 KRTAP10-10P60014 251 aa1.21□□□□□ -2.22
SLIRP-208ENST00000556956 KRTAP19-2Q3LHN2 52 aa1.19□□□□□ -2.22
SLIRP-208ENST00000556956 MUC17Q685J3 4493 aa1.18□□□□□ -2.22
SLIRP-208ENST00000556956 LRP2P98164 4655 aa1.16□□□□□ -2.22
SLIRP-208ENST00000556956 LPAP08519 4548 aa1.16□□□□□ -2.22
SLIRP-208ENST00000556956 PCLOQ9Y6V0 5065 aa1.16□□□□□ -2.22
SLIRP-208ENST00000556956 SPRR2GQ9BYE4 73 aa1.16□□□□□ -2.22
SLIRP-208ENST00000556956 HERC1Q15751 4861 aa1.15□□□□□ -2.23
SLIRP-208ENST00000556956 KRTAP8-1Q8IUC2 63 aa1.15□□□□□ -2.23
SLIRP-208ENST00000556956 FCGBPQ9Y6R7 5405 aaPredicted RBP1.14□□□□□ -2.23
SLIRP-208ENST00000556956 HMCN2Q8NDA2 5059 aa1.13□□□□□ -2.23
SLIRP-208ENST00000556956 FLGP20930 4061 aaPredicted RBP1.12□□□□□ -2.23
SLIRP-208ENST00000556956 KRTAP12-3P60328 96 aa1.11□□□□□ -2.23
SLIRP-208ENST00000556956 M0R2T5 61 aa1.1□□□□□ -2.23
SLIRP-208ENST00000556956 KRTAP19-8Q3LI54 63 aa1.1□□□□□ -2.23
SLIRP-208ENST00000556956 GPR98Q8WXG9 6306 aa1.09□□□□□ -2.24
SLIRP-208ENST00000556956 MT1XP80297 61 aa1.07□□□□□ -2.24
SLIRP-208ENST00000556956 RNF213Q63HN8 5207 aa1.06□□□□□ -2.24
SLIRP-208ENST00000556956 MT2AP02795 61 aa1.06□□□□□ -2.24
SLIRP-208ENST00000556956 MT1FP04733 61 aa1.06□□□□□ -2.24
SLIRP-208ENST00000556956 MT1HP80294 61 aa1.06□□□□□ -2.24
SLIRP-208ENST00000556956 UBR4Q5T4S7 5183 aa1.05□□□□□ -2.24
SLIRP-208ENST00000556956 MT1BP07438 61 aa1.05□□□□□ -2.24
SLIRP-208ENST00000556956 MUC2Q02817 5179 aa1.04□□□□□ -2.24
SLIRP-208ENST00000556956 KRTAP19-5Q3LI72 72 aa1.03□□□□□ -2.24
SLIRP-208ENST00000556956 FAT4Q6V0I7 4981 aa1.03□□□□□ -2.24
SLIRP-208ENST00000556956 KRTAP2-3P0C7H8 128 aa1.02□□□□□ -2.25
SLIRP-208ENST00000556956 KRTAP2-4Q9BYR9 128 aa1.02□□□□□ -2.25
SLIRP-208ENST00000556956 KRTAP2-1Q9BYU5 128 aa1.02□□□□□ -2.25
SLIRP-208ENST00000556956 KRTAP12-4P60329 112 aa0.96□□□□□ -2.26
SLIRP-208ENST00000556956 MT1EP04732 61 aa0.94□□□□□ -2.26
SLIRP-208ENST00000556956 MT1LQ93083 61 aa0.94□□□□□ -2.26
SLIRP-208ENST00000556956 KRTAP19-7Q3SYF9 63 aa0.93□□□□□ -2.26
SLIRP-208ENST00000556956 SSPOA2VEC9 5147 aa0.91□□□□□ -2.26
SLIRP-208ENST00000556956 USH2AO75445 5202 aa0.9□□□□□ -2.27
SLIRP-208ENST00000556956 AHNAKQ09666 5890 aaKnown RBP0.89□□□□□ -2.27
SLIRP-208ENST00000556956 MT1GP13640 62 aa0.88□□□□□ -2.27
SLIRP-208ENST00000556956 KRTAP19-6Q3LI70 58 aa0.88□□□□□ -2.27
SLIRP-208ENST00000556956 MT1AP04731 61 aa0.87□□□□□ -2.27
SLIRP-208ENST00000556956 KRTAP19-3Q7Z4W3 81 aa0.85□□□□□ -2.27
SLIRP-208ENST00000556956 MT1MQ8N339 61 aa0.85□□□□□ -2.27
SLIRP-208ENST00000556956 AHNAK2Q8IVF2 5795 aa0.83□□□□□ -2.28
SLIRP-208ENST00000556956 KMT2DO14686 5537 aa0.83□□□□□ -2.28
SLIRP-208ENST00000556956 MACF1Q9UPN3 7388 aaKnown RBP0.82□□□□□ -2.28
SLIRP-208ENST00000556956 FSIP2Q5CZC0 6907 aa0.82□□□□□ -2.28
SLIRP-208ENST00000556956 PRM1P04553 51 aa0.82□□□□□ -2.28
SLIRP-208ENST00000556956 KRTAP6-3Q3LI67 103 aa0.82□□□□□ -2.28
SLIRP-208ENST00000556956 MUC5BQ9HC84 5762 aaPredicted RBP0.79□□□□□ -2.28
SLIRP-208ENST00000556956 KRTAP6-1Q3LI64 71 aa0.78□□□□□ -2.28
SLIRP-208ENST00000556956 SPRR2FQ96RM1 72 aa0.78□□□□□ -2.28
SLIRP-208ENST00000556956 SYNE2Q8WXH0 6885 aaKnown RBP0.77□□□□□ -2.29
SLIRP-208ENST00000556956 KRTAP6-2Q3LI66 62 aa0.76□□□□□ -2.29
SLIRP-208ENST00000556956 MUC12Q9UKN1 5478 aa0.76□□□□□ -2.29
SLIRP-208ENST00000556956 SPRR2EP22531 72 aa0.74□□□□□ -2.29
SLIRP-208ENST00000556956 SPRR2BP35325 72 aa0.74□□□□□ -2.29
SLIRP-208ENST00000556956 SPRR2AP35326 72 aa0.74□□□□□ -2.29
SLIRP-208ENST00000556956 MDN1Q9NU22 5596 aa0.72□□□□□ -2.29
SLIRP-208ENST00000556956 SYNE1Q8NF91 8797 aaKnown RBP0.72□□□□□ -2.29
SLIRP-208ENST00000556956 NEBP20929 6669 aa0.72□□□□□ -2.29
SLIRP-208ENST00000556956 SPRR2DP22532 72 aa0.71□□□□□ -2.3
SLIRP-208ENST00000556956 DSTQ03001 7570 aaKnown RBP0.71□□□□□ -2.3
SLIRP-208ENST00000556956 KRTAP20-1Q3LI63 56 aa0.63□□□□□ -2.31
SLIRP-208ENST00000556956 KRTAP5-10Q6L8G5 202 aa0.63□□□□□ -2.31
SLIRP-208ENST00000556956 KRTAP20-2Q3LI61 65 aa0.6□□□□□ -2.31
SLIRP-208ENST00000556956 MUC5ACP98088 5654 aa0.59□□□□□ -2.31
SLIRP-208ENST00000556956 MT4P47944 62 aa0.59□□□□□ -2.31
SLIRP-208ENST00000556956 MUC16Q8WXI7 14507 aa0.59□□□□□ -2.32
SLIRP-208ENST00000556956 KRTAP21-1Q3LI58 79 aa0.54□□□□□ -2.32
SLIRP-208ENST00000556956 PHGR1C9JFL3 82 aa0.38□□□□□ -2.35
Retrieved 78 of 20,778 RNA–protein pairs in 79 ms