RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 MT1LQ93083 61 aa3.68□□□□□ -1.82
VPS29-208ENST00000550267 TRAV7A0A075B6U4 112 aa3.67□□□□□ -1.82
VPS29-208ENST00000550267 KRTAP13-4Q3LI77 160 aa3.67□□□□□ -1.82
VPS29-208ENST00000550267 COL5A1-AS1Q5SY13 56 aa3.67□□□□□ -1.82
VPS29-208ENST00000550267 GTF2H5Q6ZYL4 71 aa3.65□□□□□ -1.83
VPS29-208ENST00000550267 LCE1CQ5T751 118 aa3.64□□□□□ -1.83
VPS29-208ENST00000550267 LCE1BQ5T7P3 118 aa3.64□□□□□ -1.83
VPS29-208ENST00000550267 H3BPC8 53 aa3.63□□□□□ -1.83
VPS29-208ENST00000550267 KRTAP20-2Q3LI61 65 aa3.62□□□□□ -1.83
VPS29-208ENST00000550267 SPTSSBQ8NFR3 76 aa3.62□□□□□ -1.83
VPS29-208ENST00000550267 FAM240AA0A1B0GVK7 77 aa3.61□□□□□ -1.83
VPS29-208ENST00000550267 A8MU10 97 aa3.61□□□□□ -1.83
VPS29-208ENST00000550267 ACYP2P14621 99 aa3.6□□□□□ -1.83
VPS29-208ENST00000550267 LINC00643Q86TS7 51 aa3.57□□□□□ -1.84
VPS29-208ENST00000550267 CHKB-CPT1BH3BT56 60 aa3.54□□□□□ -1.84
VPS29-208ENST00000550267 C10orf95Q9H7T3 257 aa3.51□□□□□ -1.85
VPS29-208ENST00000550267 LOC105371267A0A1B0GV96 52 aa3.5□□□□□ -1.85
VPS29-208ENST00000550267 KRTAP12-4P60329 112 aa3.47□□□□□ -1.85
VPS29-208ENST00000550267 SPINT4Q6UDR6 99 aa3.47□□□□□ -1.85
VPS29-208ENST00000550267 KRTAP5-8O75690 187 aa3.46□□□□□ -1.86
VPS29-208ENST00000550267 SCGB1A1P11684 91 aa3.46□□□□□ -1.86
VPS29-208ENST00000550267 KRTAP12-1P59990 96 aa3.41□□□□□ -1.86
VPS29-208ENST00000550267 SPATA8Q6RVD6 105 aa3.41□□□□□ -1.86
VPS29-208ENST00000550267 SYNE1Q8NF91 8797 aaKnown RBP3.35□□□□□ -1.87
VPS29-208ENST00000550267 MUC5ACP98088 5654 aa3.34□□□□□ -1.87
VPS29-208ENST00000550267 TNP1P09430 55 aa3.34□□□□□ -1.87
VPS29-208ENST00000550267 AHNAKQ09666 5890 aaKnown RBP3.33□□□□□ -1.88
VPS29-208ENST00000550267 KRTAP12-3P60328 96 aa3.32□□□□□ -1.88
VPS29-208ENST00000550267 SERP1Q9Y6X1 66 aa3.31□□□□□ -1.88
VPS29-208ENST00000550267 MUC5BQ9HC84 5762 aaPredicted RBP3.31□□□□□ -1.88
VPS29-208ENST00000550267 A0A1B0GU33 70 aa3.3□□□□□ -1.88
VPS29-208ENST00000550267 PCP4L1A6NKN8 68 aa3.3□□□□□ -1.88
VPS29-208ENST00000550267 SEC61GP60059 68 aa3.3□□□□□ -1.88
VPS29-208ENST00000550267 SNURFQ9Y675 71 aa3.3□□□□□ -1.88
VPS29-208ENST00000550267 SPANXA2-OT1Q8N9U9 137 aa3.27□□□□□ -1.89
VPS29-208ENST00000550267 SMIM20Q8N5G0 67 aa3.24□□□□□ -1.89
VPS29-208ENST00000550267 COA5Q86WW8 74 aa3.23□□□□□ -1.89
VPS29-208ENST00000550267 SMIM26A0A096LP01 95 aa3.2□□□□□ -1.9
VPS29-208ENST00000550267 J3QR89 54 aa3.16□□□□□ -1.9
VPS29-208ENST00000550267 KRTAP6-1Q3LI64 71 aa3.14□□□□□ -1.91
VPS29-208ENST00000550267 MT1AP04731 61 aa3.12□□□□□ -1.91
VPS29-208ENST00000550267 A0A1B0GV90 55 aa3.09□□□□□ -1.91
VPS29-208ENST00000550267 A0A1B0GU69 56 aa3.07□□□□□ -1.92
VPS29-208ENST00000550267 KRTAP6-2Q3LI66 62 aa3.07□□□□□ -1.92
VPS29-208ENST00000550267 SERP2Q8N6R1 65 aa3.06□□□□□ -1.92
VPS29-208ENST00000550267 LCE3DQ9BYE3 92 aa3.05□□□□□ -1.92
VPS29-208ENST00000550267 KRTAP25-1Q3LHN0 102 aa3.01□□□□□ -1.93
VPS29-208ENST00000550267 MUC19Q7Z5P9 8384 aa3□□□□□ -1.93
VPS29-208ENST00000550267 H7BZZ5 65 aa2.88□□□□□ -1.95
VPS29-208ENST00000550267 K7ERU9 68 aa2.87□□□□□ -1.95
VPS29-208ENST00000550267 PRR15LQ9BU68 103 aa2.86□□□□□ -1.95
VPS29-208ENST00000550267 COX7CP15954 63 aa2.82□□□□□ -1.96
VPS29-208ENST00000550267 UQCR11O14957 56 aa2.75□□□□□ -1.97
VPS29-208ENST00000550267 LINC01558Q9Y6Z2 57 aa2.74□□□□□ -1.97
VPS29-208ENST00000550267 K7ERS5 55 aa2.66□□□□□ -1.98
VPS29-208ENST00000550267 MIR22HGQ0VDD5 57 aa2.66□□□□□ -1.98
VPS29-208ENST00000550267 KRTAP21-2Q3LI59 83 aa2.62□□□□□ -1.99
VPS29-208ENST00000550267 RPS28P62857 69 aaKnown RBP2.59□□□□□ -1.99
VPS29-208ENST00000550267 ATP5EP56381 51 aaPredicted RBP2.55□□□□□ -2
VPS29-208ENST00000550267 ANAPC13Q9BS18 74 aa2.5□□□□□ -2.01
VPS29-208ENST00000550267 CCDC179H3BU77 68 aa2.49□□□□□ -2.01
VPS29-208ENST00000550267 CDC42SE1Q9NRR8 79 aa2.48□□□□□ -2.01
VPS29-208ENST00000550267 Q1T7F1 81 aa2.45□□□□□ -2.02
VPS29-208ENST00000550267 ROMO1P60602 79 aa2.43□□□□□ -2.02
VPS29-208ENST00000550267 V9GYY9 64 aa2.41□□□□□ -2.02
VPS29-208ENST00000550267 PSPHP1O15172 72 aa2.4□□□□□ -2.03
VPS29-208ENST00000550267 TMEM258P61165 79 aa2.34□□□□□ -2.03
VPS29-208ENST00000550267 PHGR1C9JFL3 82 aa2.33□□□□□ -2.04
VPS29-208ENST00000550267 A6NED7 52 aa2.28□□□□□ -2.04
VPS29-208ENST00000550267 PRO0628Q9UI54 55 aa2.24□□□□□ -2.05
VPS29-208ENST00000550267 LUZP6Q538Z0 58 aa2.17□□□□□ -2.06
VPS29-208ENST00000550267 PMAIP1Q13794 54 aa1.87□□□□□ -2.11
VPS29-208ENST00000550267 KRTAP21-1Q3LI58 79 aa1.75□□□□□ -2.13
VPS29-208ENST00000550267 KTN1-AS1Q86SY8 53 aa1.64□□□□□ -2.15
VPS29-208ENST00000550267 BRK1Q8WUW1 75 aa1.49□□□□□ -2.17
VPS29-208ENST00000550267 MUC16Q8WXI7 14507 aa1.31□□□□□ -2.2
VPS29-208ENST00000550267 INE1O15225 51 aa1.3□□□□□ -2.2
VPS29-208ENST00000550267 PRM1P04553 51 aa1.23□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 11.4 ms