RNA–Protein interactions for RNA: ENST00000542552.1

ECHDC2-223, Transcript of enoyl-CoA hydratase domain containing 2, human

TSL 1 (best)

Gene ECHDC2, Length 981 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC2-223	ENST00000542552	MT1L	Q93083	61 aa		5.51	□□□□□ -1.53
ECHDC2-223	ENST00000542552		V9GYY9	64 aa		5.5	□□□□□ -1.53
ECHDC2-223	ENST00000542552		Q1T7F1	81 aa		5.49	□□□□□ -1.53
ECHDC2-223	ENST00000542552	PP632	Q6XCG6	107 aa		5.48	□□□□□ -1.53
ECHDC2-223	ENST00000542552	MT1M	Q8N339	61 aa		5.47	□□□□□ -1.53
ECHDC2-223	ENST00000542552	PSPHP1	O15172	72 aa		5.45	□□□□□ -1.54
ECHDC2-223	ENST00000542552		K7ERS5	55 aa		5.37	□□□□□ -1.55
ECHDC2-223	ENST00000542552	KRTAP12-3	P60328	96 aa		5.37	□□□□□ -1.55
ECHDC2-223	ENST00000542552	KRTAP25-1	Q3LHN0	102 aa		5.37	□□□□□ -1.55
ECHDC2-223	ENST00000542552	KRTAP4-3	Q9BYR4	195 aa		5.33	□□□□□ -1.56
ECHDC2-223	ENST00000542552	KRTAP4-9	Q9BYQ8	210 aa		5.3	□□□□□ -1.56
ECHDC2-223	ENST00000542552	RPS28	P62857	69 aa	Known RBP	5.28	□□□□□ -1.56
ECHDC2-223	ENST00000542552		A6NED7	52 aa		5.26	□□□□□ -1.57
ECHDC2-223	ENST00000542552	KRTAP4-7	Q9BYR0	210 aa		5.24	□□□□□ -1.57
ECHDC2-223	ENST00000542552	PCP4	P48539	62 aa		5.23	□□□□□ -1.57
ECHDC2-223	ENST00000542552	LCE4A	Q5TA78	99 aa		5.23	□□□□□ -1.57
ECHDC2-223	ENST00000542552	HMCN1	Q96RW7	5635 aa		5.22	□□□□□ -1.57
ECHDC2-223	ENST00000542552	LCE1D	Q5T752	114 aa		5.21	□□□□□ -1.58
ECHDC2-223	ENST00000542552	KRTAP23-1	A1A580	65 aa		5.2	□□□□□ -1.58
ECHDC2-223	ENST00000542552	KRTAP5-4	Q6L8H1	288 aa		5.19	□□□□□ -1.58
ECHDC2-223	ENST00000542552	MT4	P47944	62 aa		5.13	□□□□□ -1.59
ECHDC2-223	ENST00000542552	KRTAP19-4	Q3LI73	84 aa		5.11	□□□□□ -1.59
ECHDC2-223	ENST00000542552	CDC42SE1	Q9NRR8	79 aa		5.1	□□□□□ -1.59
ECHDC2-223	ENST00000542552	ROMO1	P60602	79 aa		5.05	□□□□□ -1.6
ECHDC2-223	ENST00000542552	KRTAP15-1	Q3LI76	137 aa		5.05	□□□□□ -1.6
ECHDC2-223	ENST00000542552	KRTAP5-5	Q701N2	237 aa	Predicted RBP	5.04	□□□□□ -1.6
ECHDC2-223	ENST00000542552	AHNAK2	Q8IVF2	5795 aa		5	□□□□□ -1.61
ECHDC2-223	ENST00000542552	LCE3C	Q5T5A8	94 aa		4.97	□□□□□ -1.61
ECHDC2-223	ENST00000542552	KRTAP5-10	Q6L8G5	202 aa		4.94	□□□□□ -1.62
ECHDC2-223	ENST00000542552	SPRR5	A0A1B0GTR4	108 aa		4.87	□□□□□ -1.63
ECHDC2-223	ENST00000542552	KRTAP20-2	Q3LI61	65 aa		4.86	□□□□□ -1.63
ECHDC2-223	ENST00000542552	SYNE1	Q8NF91	8797 aa	Known RBP	4.86	□□□□□ -1.63
ECHDC2-223	ENST00000542552	KRTAP12-4	P60329	112 aa		4.83	□□□□□ -1.64
ECHDC2-223	ENST00000542552	KRTAP9-9	Q9BYP9	154 aa		4.81	□□□□□ -1.64
ECHDC2-223	ENST00000542552	KRTAP9-4	Q9BYQ2	154 aa		4.81	□□□□□ -1.64
ECHDC2-223	ENST00000542552	KRTAP5-7	Q6L8G8	165 aa		4.8	□□□□□ -1.64
ECHDC2-223	ENST00000542552	KRTAP5-3	Q6L8H2	238 aa		4.75	□□□□□ -1.65
ECHDC2-223	ENST00000542552	KRTAP4-12	Q9BQ66	201 aa		4.74	□□□□□ -1.65
ECHDC2-223	ENST00000542552	KRTAP9-6	A8MVA2	160 aa		4.71	□□□□□ -1.66
ECHDC2-223	ENST00000542552	MT1A	P04731	61 aa		4.69	□□□□□ -1.66
ECHDC2-223	ENST00000542552	KRTAP6-1	Q3LI64	71 aa		4.65	□□□□□ -1.67
ECHDC2-223	ENST00000542552	BRK1	Q8WUW1	75 aa		4.58	□□□□□ -1.68
ECHDC2-223	ENST00000542552	KRTAP5-2	Q701N4	177 aa		4.57	□□□□□ -1.68
ECHDC2-223	ENST00000542552	KRTAP4-2	Q9BYR5	136 aa		4.48	□□□□□ -1.69
ECHDC2-223	ENST00000542552	KRTAP6-2	Q3LI66	62 aa		4.43	□□□□□ -1.7
ECHDC2-223	ENST00000542552	KRTAP4-11	Q9BYQ6	195 aa		4.42	□□□□□ -1.7
ECHDC2-223	ENST00000542552	OBSCN	Q5VST9	7968 aa		4.32	□□□□□ -1.72
ECHDC2-223	ENST00000542552	PMAIP1	Q13794	54 aa		4.31	□□□□□ -1.72
ECHDC2-223	ENST00000542552	KRTAP5-8	O75690	187 aa		4.28	□□□□□ -1.72
ECHDC2-223	ENST00000542552	MT3	P25713	68 aa		4.28	□□□□□ -1.72
ECHDC2-223	ENST00000542552	AHNAK	Q09666	5890 aa	Known RBP	4.23	□□□□□ -1.73
ECHDC2-223	ENST00000542552	MUC5AC	P98088	5654 aa		4.2	□□□□□ -1.74
ECHDC2-223	ENST00000542552	MUC5B	Q9HC84	5762 aa	Predicted RBP	4.15	□□□□□ -1.74
ECHDC2-223	ENST00000542552	PRAC1	Q96KF2	57 aa		4.15	□□□□□ -1.75
ECHDC2-223	ENST00000542552	KRTAP5-1	Q6L8H4	278 aa		4.07	□□□□□ -1.76
ECHDC2-223	ENST00000542552	PRO0628	Q9UI54	55 aa		4.05	□□□□□ -1.76
ECHDC2-223	ENST00000542552	LCE1E	Q5T753	118 aa		3.94	□□□□□ -1.78
ECHDC2-223	ENST00000542552	KTN1-AS1	Q86SY8	53 aa		3.86	□□□□□ -1.79
ECHDC2-223	ENST00000542552		H3BS24	57 aa		3.83	□□□□□ -1.8
ECHDC2-223	ENST00000542552	SVIP	Q8NHG7	77 aa		3.74	□□□□□ -1.81
ECHDC2-223	ENST00000542552	LCE1C	Q5T751	118 aa		3.65	□□□□□ -1.83
ECHDC2-223	ENST00000542552	LCE1B	Q5T7P3	118 aa		3.65	□□□□□ -1.83
ECHDC2-223	ENST00000542552	LCE3D	Q9BYE3	92 aa		3.59	□□□□□ -1.83
ECHDC2-223	ENST00000542552	LUZP6	Q538Z0	58 aa		3.47	□□□□□ -1.85
ECHDC2-223	ENST00000542552	LCE3E	Q5T5B0	92 aa		3.39	□□□□□ -1.87
ECHDC2-223	ENST00000542552	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.36	□□□□□ -1.87
ECHDC2-223	ENST00000542552	KRTAP5-11	Q6L8G4	156 aa		3.3	□□□□□ -1.88
ECHDC2-223	ENST00000542552	LCE1F	Q5T754	118 aa		3.19	□□□□□ -1.9
ECHDC2-223	ENST00000542552	KRTAP21-2	Q3LI59	83 aa		3.09	□□□□□ -1.91
ECHDC2-223	ENST00000542552		A0A0A0MQY5	61 aa		2.99	□□□□□ -1.93
ECHDC2-223	ENST00000542552	PHGR1	C9JFL3	82 aa		2.89	□□□□□ -1.95
ECHDC2-223	ENST00000542552	NDUFAF8	A1L188	74 aa		2.82	□□□□□ -1.96
ECHDC2-223	ENST00000542552	KRTAP4-4	Q9BYR3	166 aa		2.77	□□□□□ -1.97
ECHDC2-223	ENST00000542552	MUC19	Q7Z5P9	8384 aa		2.67	□□□□□ -1.98
ECHDC2-223	ENST00000542552	PRM1	P04553	51 aa		2.58	□□□□□ -2
ECHDC2-223	ENST00000542552	INE1	O15225	51 aa		2.3	□□□□□ -2.04
ECHDC2-223	ENST00000542552	KRTAP21-1	Q3LI58	79 aa		2.2	□□□□□ -2.06
ECHDC2-223	ENST00000542552	MUC16	Q8WXI7	14507 aa		1.84	□□□□□ -2.11

Retrieved 78 of 20,778 RNA–protein pairs in 78.4 ms